Gcaud1977.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1977.t1
Unique NameGcaud1977.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Homology
BLAST of Gcaud1977.t1 vs. uniprot
Match: A0A2V3INN9_9FLOR (Uncharacterized protein ycf18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INN9_9FLOR)

HSP 1 Score: 168 bits (426), Expect = 2.870e-51
Identity = 91/135 (67.41%), Postives = 106/135 (78.52%), Query Frame = 0
Query:   12 MAATSVTSLCSFVLPVSVF-HGNQTKASFHSPLCKRPRSTPKHAAHLFPCAVYQPSEEDRGESLPETPNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNKDVNFGVEPPDPDDMQND 145
            MA TSV SL  F+L + +F       +  H+PL KRPR      A  FP AVY+PSEEDRGE LPE PN+LTLAQQLLMKQY EQV+RMS +ECRKLAVE+VRQMMVKDNIMKKMLN++V+FGVEPPDPDD+Q+D
Sbjct:    1 MAQTSV-SLPLFILALPLFPRAPSIPSPRHTPLAKRPRPPSPQTAPCFPRAVYKPSEEDRGEPLPEIPNQLTLAQQLLMKQYAEQVQRMSSEECRKLAVEIVRQMMVKDNIMKKMLNRNVDFGVEPPDPDDVQDD 134          
BLAST of Gcaud1977.t1 vs. uniprot
Match: A0A1X6PFB5_PORUM (Uncharacterized protein ycf18 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFB5_PORUM)

HSP 1 Score: 84.0 bits (206), Expect = 4.700e-17
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   61 AVYQPSEEDRGESLP-ETPNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNKDVN--FGVEPPDPDD 141
            A Y P  EDR E +  E P  LTL+QQLL+KQY EQV  MS  +C++L VEVVRQMMVKDNI+K MLN++ +    V+ P+P D
Sbjct:  118 AAYVPGSEDRPEGVGNELPTSLTLSQQLLLKQYVEQVRTMSEQQCKELTVEVVRQMMVKDNILKSMLNEEASKQLKVDAPNPSD 201          
BLAST of Gcaud1977.t1 vs. uniprot
Match: A0A6S6RQX4_NEOYE (Uncharacterized protein ycf18 n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=A0A6S6RQX4_NEOYE)

HSP 1 Score: 81.6 bits (200), Expect = 4.790e-16
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 0
Query:   61 AVYQPSEEDRGESL-PETPNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNKDVN--FGVEPPDPDD 141
            A Y P++ED  E +  E P +LTL+QQLL+KQY EQV+ MS  +C++L +EVVRQMMVKDNI+K MLN+       ++ PDP D
Sbjct:  136 AAYVPTQEDLPEGVGDELPTKLTLSQQLLLKQYIEQVQTMSEQQCKELTLEVVRQMMVKDNILKSMLNEKAQKQLKLDAPDPSD 219          
BLAST of Gcaud1977.t1 vs. uniprot
Match: A0A7S0ZDA3_9RHOD (Uncharacterized protein ycf18 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZDA3_9RHOD)

HSP 1 Score: 78.2 bits (191), Expect = 6.630e-15
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 0
Query:   72 ESLP---ETPNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNKDVNFGVEPPDP 139
            E LP   E P EL+LAQQLL+KQY +QV+ MS +EC ++A+ +VRQ+M+K+N++K+MLN+D++FG   P P
Sbjct:  101 EDLPIQTENPRELSLAQQLLLKQYSDQVKTMSAEECSEMAMSIVRQIMLKENMLKQMLNRDLDFGDNIPSP 171          
BLAST of Gcaud1977.t1 vs. uniprot
Match: M2WV85_GALSU (Uncharacterized protein ycf18 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WV85_GALSU)

HSP 1 Score: 62.8 bits (151), Expect = 4.010e-9
Identity = 35/84 (41.67%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   62 VYQPSEEDRGESLPET-PNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNK-DVNFGVEPPDPDDMQ 143
            ++  S ED  E+LP T P  LTL+QQLL ++Y E+V+ M+  +C+ + VE+V+Q M+KDNIM+ +L + +V+   + P P++ Q
Sbjct:   88 LHMSSIEDVPENLPSTFPTGLTLSQQLLFRRYVEEVKSMTPAQCQSMIVELVKQTMLKDNIMRSLLKQPEVSLTSQLPSPEEFQ 171          
BLAST of Gcaud1977.t1 vs. uniprot
Match: A0A7S0T3S6_9RHOD (Uncharacterized protein ycf18 n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T3S6_9RHOD)

HSP 1 Score: 60.8 bits (146), Expect = 4.660e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query:   76 ETPNELTLAQQLLMKQYEEQVERMSGDECRKLAVEVVRQMMVKDNIMKKMLNKD-VNFGVEPPDP 139
            E P EL+L QQL++KQY + V  MS +EC ++  E+ +Q+M+K N++K +L KD + FG   P P
Sbjct:   18 ENPAELSLTQQLMLKQYTDNVRNMSAEECAEMVTEIAKQIMLKQNLLKSILKKDDLEFGPAIPSP 82          
The following BLAST results are available for this feature:
BLAST of Gcaud1977.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3INN9_9FLOR2.870e-5167.41Uncharacterized protein ycf18 n=1 Tax=Gracilariops... [more]
A0A1X6PFB5_PORUM4.700e-1755.95Uncharacterized protein ycf18 n=1 Tax=Porphyra umb... [more]
A0A6S6RQX4_NEOYE4.790e-1653.57Uncharacterized protein ycf18 n=1 Tax=Neopyropia y... [more]
A0A7S0ZDA3_9RHOD6.630e-1553.52Uncharacterized protein ycf18 n=1 Tax=Timspurckia ... [more]
M2WV85_GALSU4.010e-941.67Uncharacterized protein ycf18 n=1 Tax=Galdieria su... [more]
A0A7S0T3S6_9RHOD4.660e-944.62Uncharacterized protein ycf18 n=1 Tax=Erythrolobus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007574Phycobilisome degradation protein NblAPFAMPF04485NblAcoord: 80..127
e-value: 5.8E-12
score: 45.8
IPR036904Phycobilisome degradation protein NblA superfamilyGENE3D1.10.287.670Phycobilisome degradation protein NblAcoord: 71..129
e-value: 1.8E-19
score: 71.3
IPR036904Phycobilisome degradation protein NblA superfamilySUPERFAMILY109859NblA-likecoord: 80..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..145
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:4542..4979 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1Gcaud1977.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 4542..4979 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MMRVNKRPPPGMAATSVTSLCSFVLPVSVFHGNQTKASFHSPLCKRPRST
PKHAAHLFPCAVYQPSEEDRGESLPETPNELTLAQQLLMKQYEEQVERMS
GDECRKLAVEVVRQMMVKDNIMKKMLNKDVNFGVEPPDPDDMQND*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007574NblA
IPR036904NblA_sf