|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 118161.KB235922_gene1664 |
| PFAMs | Big_5,GSDH,Malectin,TIG |
| Max annot lvl | 1117|Cyanobacteria |
| Evalue | 4.8e-54 |
| EggNOG OGs | COG2133@1|root,COG2982@1|root,COG3210@1|root,COG2133@2|Bacteria,COG2982@2|Bacteria,COG3210@2|Bacteria,1G17Y@1117|Cyanobacteria |
| Description | Glucose / Sorbosone dehydrogenase |
| COG category | G |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1992.t1.start1 | Gcaud1992.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_5_length_105932_cov_4.447794 41021..41023 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1992.t1.stop1 | Gcaud1992.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_5_length_105932_cov_4.447794 43619..43621 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1992.t1 ID=Gcaud1992.t1|Name=Gcaud1992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=867bp MRRPSRLLASVLFAALVATAFAASPSDNNGGFDHRAHAVPGGPYDIPDDD SDGFALVKLNGELSHSHFFNPKTGGTGRVVKYFWSIGKKVVCRKMVCHVK FPRGNTRVDLRVVDNTGDSATASTNVRVYEGARPKLRYWFYPSKGWIADN VNAGQPMYSMSEPGVNMHSPGMFPGFLNKKKFSMRVLGNIDMHRQGNYRF RLRCLGGACTMWVGRTMVLVGKDSVITSKPMMFSKGVKKLHIVYRRPNPS AQKPRLVLSWQAPGRKSWSVVPRKFFSHNPASLKAVVKSVHPKRAEVGGV ITIVGSSLLNIKSVHIGKSRCAGPTGKNQYAIKCVVPGITGTYEVYVRTA VGVSNSVPLTISVGSFGSKFGSEGNGVGPVGYFQPVRFRNDVLKRNGKVF NVPQLTAITYGPDNQYYIGSLGGFVHVVRTDLGNQVKGYCKSERVGKSRS VLGVAFNPAENDRVRLYASTSVLYWGTKKLLPFTRGWHNGEIIAMQKSKK CLTRVQTVISGLPVSNYDHSVNGLAFDMGGNLLISIGGGTNAGVSKKGDP LGGVPDSPLSGAVLWAPILKRNYNGKIGYNQYFDPGRANKVRGDVHVYSS GLRNSFSNVAHSNGHIYATDNGANAKFGSRSTGCHSEGGIATEPDTLKML KRGGFYGYSNRNRGRYDRRQCRHRSPHTNEGGFDKPIARMESSTTGLLEY TANTFGAQMRGDLLATKFAVSGNGKVYRIQLNGAGKVKSMFNLAFHSGLS AAMSPAGGLVMPRVYQGKIAVLLANEKNPGRMVVTSVNPFRGPKRGGGKI TITGWNLKPPLSITVGGKACKNVGEYMGGRSVSCNVPRGSGRAAVVVKRF GKQSKSFGYEYIYMKV* back to topspliced messenger RNA >Gcaud1992.t1 ID=Gcaud1992.t1|Name=Gcaud1992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2601bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:41021..43621+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTCGCCCATCCCGCTTGCTCGCGTCAGTTCTGTTCGCCGCGCTCGT GGCGACAGCTTTTGCCGCCTCGCCATCAGATAACAATGGAGGCTTCGACC ATCGAGCCCACGCCGTTCCGGGCGGTCCGTACGACATCCCCGACGACGAC TCTGACGGCTTCGCTTTGGTCAAGCTAAATGGGGAGCTTTCTCACAGTCA TTTCTTCAACCCCAAGACCGGCGGTACTGGAAGGGTGGTCAAGTACTTTT GGTCCATCGGGAAAAAGGTCGTGTGCCGCAAAATGGTTTGCCACGTCAAG TTCCCTCGCGGTAACACTCGCGTCGACCTGCGTGTCGTCGATAATACCGG CGATTCCGCTACTGCCAGCACTAATGTGCGCGTGTATGAGGGAGCCAGGC CCAAGCTCAGGTACTGGTTCTACCCGTCAAAGGGATGGATTGCCGACAAC GTCAATGCCGGACAGCCCATGTACTCCATGTCCGAACCCGGCGTCAACAT GCACTCGCCAGGAATGTTCCCGGGATTCCTCAACAAGAAGAAGTTCTCTA TGCGCGTGCTCGGAAACATCGACATGCACAGACAGGGCAACTACCGCTTT CGACTCCGCTGTTTGGGCGGAGCCTGCACCATGTGGGTTGGCCGCACAAT GGTGCTTGTCGGCAAAGACAGCGTCATCACTTCCAAGCCTATGATGTTCT CCAAGGGCGTCAAGAAACTTCATATTGTGTACAGACGCCCCAACCCTAGC GCGCAGAAGCCCAGACTCGTGCTGTCGTGGCAGGCTCCAGGAAGAAAATC GTGGTCTGTCGTTCCACGCAAGTTCTTTTCGCACAACCCGGCCTCTTTGA AGGCCGTTGTGAAATCGGTCCATCCAAAACGGGCTGAGGTCGGAGGTGTC ATCACCATTGTTGGAAGCAGTTTACTCAACATCAAGTCCGTACATATCGG TAAGTCCAGGTGTGCAGGACCTACCGGCAAGAATCAATACGCTATCAAAT GTGTCGTCCCTGGTATCACCGGCACGTACGAGGTGTATGTCAGAACTGCC GTGGGTGTATCCAACTCCGTACCGCTTACTATCTCCGTCGGTTCATTCGG AAGCAAGTTTGGTTCTGAGGGTAACGGCGTTGGGCCGGTAGGCTACTTCC AGCCAGTGCGATTCAGAAACGACGTCTTGAAGAGGAACGGTAAGGTGTTC AATGTGCCTCAGCTTACTGCCATTACTTATGGTCCAGACAACCAGTACTA CATCGGAAGTCTTGGCGGCTTTGTCCATGTGGTTAGAACCGACCTTGGAA ATCAAGTGAAGGGCTACTGCAAGTCTGAAAGAGTGGGCAAGTCTAGAAGT GTACTCGGCGTTGCGTTCAACCCCGCGGAGAACGACAGAGTCAGGCTTTA TGCTTCCACGAGTGTGCTGTACTGGGGCACCAAAAAGCTTCTTCCATTCA CTCGAGGCTGGCACAACGGCGAGATCATTGCCATGCAGAAGTCCAAGAAG TGTCTCACGCGCGTCCAGACCGTGATTAGCGGCTTGCCGGTTTCTAATTA TGACCATTCCGTGAACGGTCTTGCCTTCGATATGGGTGGAAATCTTCTCA TTTCCATTGGTGGTGGCACCAACGCTGGTGTGAGCAAGAAAGGAGACCCG TTAGGAGGTGTGCCGGACTCGCCGTTGTCGGGCGCGGTGCTTTGGGCCCC GATCTTGAAGAGGAACTACAACGGAAAAATTGGCTACAATCAGTACTTTG ACCCAGGCAGGGCAAACAAGGTTCGCGGCGACGTTCACGTGTATTCGTCG GGTCTGAGAAACTCGTTCTCCAATGTGGCGCATTCCAACGGTCACATTTA TGCCACTGACAACGGTGCCAATGCCAAGTTTGGCTCGCGTAGTACTGGAT GCCACAGCGAAGGTGGGATTGCTACTGAACCTGATACGCTCAAGATGCTG AAGAGAGGCGGATTCTATGGGTACTCTAACAGGAACCGTGGACGATATGA TCGCCGACAATGCAGACACCGTTCGCCGCATACGAACGAAGGTGGATTCG ACAAGCCTATTGCCAGGATGGAATCCAGTACCACCGGTCTACTGGAGTAC ACTGCGAACACTTTCGGTGCGCAGATGAGGGGTGACTTGCTGGCTACCAA ATTTGCTGTTTCTGGAAACGGAAAGGTTTATAGGATTCAGCTGAATGGAG CTGGTAAGGTGAAGTCGATGTTCAACCTTGCGTTCCATTCTGGGCTTTCG GCGGCCATGTCGCCGGCCGGTGGTCTGGTGATGCCCAGAGTGTACCAAGG CAAGATTGCTGTTCTGCTTGCCAACGAGAAGAACCCTGGTCGTATGGTGG TGACAAGCGTGAACCCGTTCCGCGGCCCCAAGCGCGGAGGCGGCAAGATC ACGATCACAGGATGGAACCTCAAACCTCCTCTGAGCATCACGGTGGGCGG AAAGGCTTGTAAGAACGTGGGCGAATACATGGGAGGTCGAAGCGTGAGCT GCAATGTTCCCAGGGGCTCTGGCAGGGCTGCTGTGGTGGTGAAGCGTTTC GGCAAGCAATCGAAGAGCTTTGGCTATGAGTATATATACATGAAGGTTTA G back to topprotein sequence of Gcaud1992.t1 >Gcaud1992.t1 ID=Gcaud1992.t1|Name=Gcaud1992.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=867bp
MRRPSRLLASVLFAALVATAFAASPSDNNGGFDHRAHAVPGGPYDIPDDD SDGFALVKLNGELSHSHFFNPKTGGTGRVVKYFWSIGKKVVCRKMVCHVK FPRGNTRVDLRVVDNTGDSATASTNVRVYEGARPKLRYWFYPSKGWIADN VNAGQPMYSMSEPGVNMHSPGMFPGFLNKKKFSMRVLGNIDMHRQGNYRF RLRCLGGACTMWVGRTMVLVGKDSVITSKPMMFSKGVKKLHIVYRRPNPS AQKPRLVLSWQAPGRKSWSVVPRKFFSHNPASLKAVVKSVHPKRAEVGGV ITIVGSSLLNIKSVHIGKSRCAGPTGKNQYAIKCVVPGITGTYEVYVRTA VGVSNSVPLTISVGSFGSKFGSEGNGVGPVGYFQPVRFRNDVLKRNGKVF NVPQLTAITYGPDNQYYIGSLGGFVHVVRTDLGNQVKGYCKSERVGKSRS VLGVAFNPAENDRVRLYASTSVLYWGTKKLLPFTRGWHNGEIIAMQKSKK CLTRVQTVISGLPVSNYDHSVNGLAFDMGGNLLISIGGGTNAGVSKKGDP LGGVPDSPLSGAVLWAPILKRNYNGKIGYNQYFDPGRANKVRGDVHVYSS GLRNSFSNVAHSNGHIYATDNGANAKFGSRSTGCHSEGGIATEPDTLKML KRGGFYGYSNRNRGRYDRRQCRHRSPHTNEGGFDKPIARMESSTTGLLEY TANTFGAQMRGDLLATKFAVSGNGKVYRIQLNGAGKVKSMFNLAFHSGLS AAMSPAGGLVMPRVYQGKIAVLLANEKNPGRMVVTSVNPFRGPKRGGGKI TITGWNLKPPLSITVGGKACKNVGEYMGGRSVSCNVPRGSGRAAVVVKRF GKQSKSFGYEYIYMKV* back to topmRNA from alignment at NODE_5_length_105932_cov_4.447794:41021..43621+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1992.t1 ID=Gcaud1992.t1|Name=Gcaud1992.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2601bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:41021..43621+ (Gracilaria caudata M_176_S67 male) ATGCGTCGCCCATCCCGCTTGCTCGCGTCAGTTCTGTTCGCCGCGCTCGT
GGCGACAGCTTTTGCCGCCTCGCCATCAGATAACAATGGAGGCTTCGACC
ATCGAGCCCACGCCGTTCCGGGCGGTCCGTACGACATCCCCGACGACGAC
TCTGACGGCTTCGCTTTGGTCAAGCTAAATGGGGAGCTTTCTCACAGTCA
TTTCTTCAACCCCAAGACCGGCGGTACTGGAAGGGTGGTCAAGTACTTTT
GGTCCATCGGGAAAAAGGTCGTGTGCCGCAAAATGGTTTGCCACGTCAAG
TTCCCTCGCGGTAACACTCGCGTCGACCTGCGTGTCGTCGATAATACCGG
CGATTCCGCTACTGCCAGCACTAATGTGCGCGTGTATGAGGGAGCCAGGC
CCAAGCTCAGGTACTGGTTCTACCCGTCAAAGGGATGGATTGCCGACAAC
GTCAATGCCGGACAGCCCATGTACTCCATGTCCGAACCCGGCGTCAACAT
GCACTCGCCAGGAATGTTCCCGGGATTCCTCAACAAGAAGAAGTTCTCTA
TGCGCGTGCTCGGAAACATCGACATGCACAGACAGGGCAACTACCGCTTT
CGACTCCGCTGTTTGGGCGGAGCCTGCACCATGTGGGTTGGCCGCACAAT
GGTGCTTGTCGGCAAAGACAGCGTCATCACTTCCAAGCCTATGATGTTCT
CCAAGGGCGTCAAGAAACTTCATATTGTGTACAGACGCCCCAACCCTAGC
GCGCAGAAGCCCAGACTCGTGCTGTCGTGGCAGGCTCCAGGAAGAAAATC
GTGGTCTGTCGTTCCACGCAAGTTCTTTTCGCACAACCCGGCCTCTTTGA
AGGCCGTTGTGAAATCGGTCCATCCAAAACGGGCTGAGGTCGGAGGTGTC
ATCACCATTGTTGGAAGCAGTTTACTCAACATCAAGTCCGTACATATCGG
TAAGTCCAGGTGTGCAGGACCTACCGGCAAGAATCAATACGCTATCAAAT
GTGTCGTCCCTGGTATCACCGGCACGTACGAGGTGTATGTCAGAACTGCC
GTGGGTGTATCCAACTCCGTACCGCTTACTATCTCCGTCGGTTCATTCGG
AAGCAAGTTTGGTTCTGAGGGTAACGGCGTTGGGCCGGTAGGCTACTTCC
AGCCAGTGCGATTCAGAAACGACGTCTTGAAGAGGAACGGTAAGGTGTTC
AATGTGCCTCAGCTTACTGCCATTACTTATGGTCCAGACAACCAGTACTA
CATCGGAAGTCTTGGCGGCTTTGTCCATGTGGTTAGAACCGACCTTGGAA
ATCAAGTGAAGGGCTACTGCAAGTCTGAAAGAGTGGGCAAGTCTAGAAGT
GTACTCGGCGTTGCGTTCAACCCCGCGGAGAACGACAGAGTCAGGCTTTA
TGCTTCCACGAGTGTGCTGTACTGGGGCACCAAAAAGCTTCTTCCATTCA
CTCGAGGCTGGCACAACGGCGAGATCATTGCCATGCAGAAGTCCAAGAAG
TGTCTCACGCGCGTCCAGACCGTGATTAGCGGCTTGCCGGTTTCTAATTA
TGACCATTCCGTGAACGGTCTTGCCTTCGATATGGGTGGAAATCTTCTCA
TTTCCATTGGTGGTGGCACCAACGCTGGTGTGAGCAAGAAAGGAGACCCG
TTAGGAGGTGTGCCGGACTCGCCGTTGTCGGGCGCGGTGCTTTGGGCCCC
GATCTTGAAGAGGAACTACAACGGAAAAATTGGCTACAATCAGTACTTTG
ACCCAGGCAGGGCAAACAAGGTTCGCGGCGACGTTCACGTGTATTCGTCG
GGTCTGAGAAACTCGTTCTCCAATGTGGCGCATTCCAACGGTCACATTTA
TGCCACTGACAACGGTGCCAATGCCAAGTTTGGCTCGCGTAGTACTGGAT
GCCACAGCGAAGGTGGGATTGCTACTGAACCTGATACGCTCAAGATGCTG
AAGAGAGGCGGATTCTATGGGTACTCTAACAGGAACCGTGGACGATATGA
TCGCCGACAATGCAGACACCGTTCGCCGCATACGAACGAAGGTGGATTCG
ACAAGCCTATTGCCAGGATGGAATCCAGTACCACCGGTCTACTGGAGTAC
ACTGCGAACACTTTCGGTGCGCAGATGAGGGGTGACTTGCTGGCTACCAA
ATTTGCTGTTTCTGGAAACGGAAAGGTTTATAGGATTCAGCTGAATGGAG
CTGGTAAGGTGAAGTCGATGTTCAACCTTGCGTTCCATTCTGGGCTTTCG
GCGGCCATGTCGCCGGCCGGTGGTCTGGTGATGCCCAGAGTGTACCAAGG
CAAGATTGCTGTTCTGCTTGCCAACGAGAAGAACCCTGGTCGTATGGTGG
TGACAAGCGTGAACCCGTTCCGCGGCCCCAAGCGCGGAGGCGGCAAGATC
ACGATCACAGGATGGAACCTCAAACCTCCTCTGAGCATCACGGTGGGCGG
AAAGGCTTGTAAGAACGTGGGCGAATACATGGGAGGTCGAAGCGTGAGCT
GCAATGTTCCCAGGGGCTCTGGCAGGGCTGCTGTGGTGGTGAAGCGTTTC
GGCAAGCAATCGAAGAGCTTTGGCTATGAGTATATATACATGAAGGTTTA
G back to topCoding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:41021..43621+ >Gcaud1992.t1 ID=Gcaud1992.t1|Name=Gcaud1992.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2601bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:41021..43621+ (Gracilaria caudata M_176_S67 male) ATGCGTCGCCCATCCCGCTTGCTCGCGTCAGTTCTGTTCGCCGCGCTCGT GGCGACAGCTTTTGCCGCCTCGCCATCAGATAACAATGGAGGCTTCGACC ATCGAGCCCACGCCGTTCCGGGCGGTCCGTACGACATCCCCGACGACGAC TCTGACGGCTTCGCTTTGGTCAAGCTAAATGGGGAGCTTTCTCACAGTCA TTTCTTCAACCCCAAGACCGGCGGTACTGGAAGGGTGGTCAAGTACTTTT GGTCCATCGGGAAAAAGGTCGTGTGCCGCAAAATGGTTTGCCACGTCAAG TTCCCTCGCGGTAACACTCGCGTCGACCTGCGTGTCGTCGATAATACCGG CGATTCCGCTACTGCCAGCACTAATGTGCGCGTGTATGAGGGAGCCAGGC CCAAGCTCAGGTACTGGTTCTACCCGTCAAAGGGATGGATTGCCGACAAC GTCAATGCCGGACAGCCCATGTACTCCATGTCCGAACCCGGCGTCAACAT GCACTCGCCAGGAATGTTCCCGGGATTCCTCAACAAGAAGAAGTTCTCTA TGCGCGTGCTCGGAAACATCGACATGCACAGACAGGGCAACTACCGCTTT CGACTCCGCTGTTTGGGCGGAGCCTGCACCATGTGGGTTGGCCGCACAAT GGTGCTTGTCGGCAAAGACAGCGTCATCACTTCCAAGCCTATGATGTTCT CCAAGGGCGTCAAGAAACTTCATATTGTGTACAGACGCCCCAACCCTAGC GCGCAGAAGCCCAGACTCGTGCTGTCGTGGCAGGCTCCAGGAAGAAAATC GTGGTCTGTCGTTCCACGCAAGTTCTTTTCGCACAACCCGGCCTCTTTGA AGGCCGTTGTGAAATCGGTCCATCCAAAACGGGCTGAGGTCGGAGGTGTC ATCACCATTGTTGGAAGCAGTTTACTCAACATCAAGTCCGTACATATCGG TAAGTCCAGGTGTGCAGGACCTACCGGCAAGAATCAATACGCTATCAAAT GTGTCGTCCCTGGTATCACCGGCACGTACGAGGTGTATGTCAGAACTGCC GTGGGTGTATCCAACTCCGTACCGCTTACTATCTCCGTCGGTTCATTCGG AAGCAAGTTTGGTTCTGAGGGTAACGGCGTTGGGCCGGTAGGCTACTTCC AGCCAGTGCGATTCAGAAACGACGTCTTGAAGAGGAACGGTAAGGTGTTC AATGTGCCTCAGCTTACTGCCATTACTTATGGTCCAGACAACCAGTACTA CATCGGAAGTCTTGGCGGCTTTGTCCATGTGGTTAGAACCGACCTTGGAA ATCAAGTGAAGGGCTACTGCAAGTCTGAAAGAGTGGGCAAGTCTAGAAGT GTACTCGGCGTTGCGTTCAACCCCGCGGAGAACGACAGAGTCAGGCTTTA TGCTTCCACGAGTGTGCTGTACTGGGGCACCAAAAAGCTTCTTCCATTCA CTCGAGGCTGGCACAACGGCGAGATCATTGCCATGCAGAAGTCCAAGAAG TGTCTCACGCGCGTCCAGACCGTGATTAGCGGCTTGCCGGTTTCTAATTA TGACCATTCCGTGAACGGTCTTGCCTTCGATATGGGTGGAAATCTTCTCA TTTCCATTGGTGGTGGCACCAACGCTGGTGTGAGCAAGAAAGGAGACCCG TTAGGAGGTGTGCCGGACTCGCCGTTGTCGGGCGCGGTGCTTTGGGCCCC GATCTTGAAGAGGAACTACAACGGAAAAATTGGCTACAATCAGTACTTTG ACCCAGGCAGGGCAAACAAGGTTCGCGGCGACGTTCACGTGTATTCGTCG GGTCTGAGAAACTCGTTCTCCAATGTGGCGCATTCCAACGGTCACATTTA TGCCACTGACAACGGTGCCAATGCCAAGTTTGGCTCGCGTAGTACTGGAT GCCACAGCGAAGGTGGGATTGCTACTGAACCTGATACGCTCAAGATGCTG AAGAGAGGCGGATTCTATGGGTACTCTAACAGGAACCGTGGACGATATGA TCGCCGACAATGCAGACACCGTTCGCCGCATACGAACGAAGGTGGATTCG ACAAGCCTATTGCCAGGATGGAATCCAGTACCACCGGTCTACTGGAGTAC ACTGCGAACACTTTCGGTGCGCAGATGAGGGGTGACTTGCTGGCTACCAA ATTTGCTGTTTCTGGAAACGGAAAGGTTTATAGGATTCAGCTGAATGGAG CTGGTAAGGTGAAGTCGATGTTCAACCTTGCGTTCCATTCTGGGCTTTCG GCGGCCATGTCGCCGGCCGGTGGTCTGGTGATGCCCAGAGTGTACCAAGG CAAGATTGCTGTTCTGCTTGCCAACGAGAAGAACCCTGGTCGTATGGTGG TGACAAGCGTGAACCCGTTCCGCGGCCCCAAGCGCGGAGGCGGCAAGATC ACGATCACAGGATGGAACCTCAAACCTCCTCTGAGCATCACGGTGGGCGG AAAGGCTTGTAAGAACGTGGGCGAATACATGGGAGGTCGAAGCGTGAGCT GCAATGTTCCCAGGGGCTCTGGCAGGGCTGCTGTGGTGGTGAAGCGTTTC GGCAAGCAATCGAAGAGCTTTGGCTATGAGTATATATACATGAAGGTTTA G back to top
|