Gcaud1994.t4 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1994.t4
Unique Name	Gcaud1994.t4
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:48952..50895 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_67172
PFAMs	Amino_oxidase,zf-CW
Max annot lvl	2759\|Eukaryota
Evalue	1.13e-45
EggNOG OGs	COG1231@1\|root,KOG0029@2759\|Eukaryota
Description	oxidoreductase activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1994	Gcaud1994	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 47794..50895 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t4.start1	Gcaud1994.t4.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 48952..48954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t4.CDS1	Gcaud1994.t4.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 48952..50895 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t4.exon1	Gcaud1994.t4.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 48952..50895 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t4.stop1	Gcaud1994.t4.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 50893..50895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t4	Gcaud1994.t4	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 48952..50895 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+

mRNA sequence

>Gcaud1994.t4 ID=Gcaud1994.t4|Name=Gcaud1994.t4|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp
MIASKKGGAGDRIVLDGYTPFLIDRLKQGLHIRLKQSVCSVSKAVKPRID
HALAMEEPHSSAHANRPAKRARTHTLSNWDADPEVAQRTILVTTRSGEVY
QGDFVVIAIPLGVLRSEHEESSVSFSPPLSIEKQEAIRGMGMGIHNKVVL
RFREEDIFWPPKVPQLNCLDPRFQFFNMHCYGKTATILVHVFCESGFANG
FWDLTDEGVLAEVLAVLGGMFCSPSENGTIKPQTNTTEQGSRIASNAIAK
RRIARLLHICENCRRPLEPTSSDADAPKINPVSCQNCGFVVQEDDALTAS
TRPERMTRSRANEMQQDIQLESNAPTANEDEITPPPKRFTWQTFPAPVEY
LVTRWEVDPFALGSYSYMPCGSDWNMIDHVGAPEPSGFMKPYIFFAGEHC
SDMGWQCVHGAYETGIRAAKQILACLRGESLNESLHDANKQGNSVADSEL
AQVGGASDSFWTPEREKALTRALIGYSDVYGNFGDVIDEISYALQSFKKE
PTQLTREEIRKLILERINERVEEHEPEAVAFMRFHRDEERHHIEIFPKPF
HEVYKRPRLVGLNGMKLKERYAEDIIRELRSYARPVFENQISYRETLRKI
ALVIYKKDGGLMTKRCLSEYLRTQEFGTGPQKELFLAKYLPDMQNKE*

spliced messenger RNA

>Gcaud1994.t4 ID=Gcaud1994.t4|Name=Gcaud1994.t4|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTCTTAGATGG
CTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCATATTCGTT
TGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTCGAATAGAC
CATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCCAACAGGCC
TGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGCCGATCCAG
AGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTGAGGTGTAT
CAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTGCGGAGCGA
ACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCATAGAGAAGC
AAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAGTAGTGTTG
CGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCTCAGCTAAA
TTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTATGGAAAGA
CAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCGCAAATGGT
TTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTTGCAGTCCT
GGGGGGTATGTTTTGTTCCCCGTCTGAAAACGGTACCATCAAGCCGCAGA
CGAACACAACAGAGCAGGGATCACGAATTGCATCAAATGCGATTGCTAAG
CGTCGTATTGCGCGGTTGCTTCATATATGTGAGAACTGTAGGCGACCTTT
GGAGCCTACCAGTTCAGATGCAGATGCTCCAAAGATAAATCCCGTATCAT
GTCAAAACTGCGGATTTGTCGTACAGGAAGACGATGCTCTAACTGCTAGT
ACGCGACCAGAGCGTATGACAAGATCAAGAGCAAACGAGATGCAACAGGA
CATCCAGCTTGAATCCAATGCGCCAACTGCAAACGAAGACGAGATCACTC
CACCTCCAAAGCGATTCACATGGCAAACATTTCCGGCACCAGTGGAATAC
CTTGTCACAAGATGGGAAGTCGATCCGTTTGCTCTAGGATCATATTCGTA
CATGCCATGCGGTAGTGACTGGAACATGATAGATCATGTGGGTGCCCCTG
AGCCCAGTGGGTTCATGAAACCATACATATTCTTTGCAGGAGAGCACTGT
AGCGACATGGGCTGGCAATGTGTGCACGGTGCTTATGAGACTGGGATTCG
GGCTGCGAAGCAGATTTTGGCTTGTCTCCGTGGCGAGTCATTAAATGAAT
CTCTGCATGATGCCAACAAACAAGGCAATTCAGTTGCAGATTCAGAGCTT
GCCCAAGTCGGAGGAGCATCTGATTCCTTCTGGACCCCAGAGAGAGAAAA
GGCCCTCACAAGGGCGTTGATAGGTTACTCTGATGTTTATGGTAACTTCG
GTGATGTCATTGATGAAATCTCATATGCGTTGCAATCTTTTAAGAAGGAG
CCCACTCAGCTGACAAGAGAAGAAATCCGAAAACTAATTCTCGAGCGGAT
AAACGAGAGGGTTGAAGAGCACGAACCGGAGGCCGTGGCGTTCATGAGAT
TCCACCGAGATGAGGAACGTCATCACATAGAGATTTTCCCAAAGCCCTTC
CACGAAGTTTACAAGCGACCGAGACTCGTTGGGCTCAATGGAATGAAGTT
GAAAGAACGGTATGCTGAAGATATTATTCGTGAACTGCGTAGTTACGCAA
GGCCTGTGTTCGAAAACCAAATATCATACCGAGAAACGTTACGCAAGATT
GCGTTGGTCATATACAAGAAGGACGGTGGTCTCATGACAAAGAGGTGCTT
GTCCGAGTACTTACGGACCCAGGAGTTTGGTACAGGACCTCAGAAAGAGC
TTTTCCTAGCAAAATACTTGCCTGACATGCAGAATAAAGAATAG

protein sequence of Gcaud1994.t4

>Gcaud1994.t4 ID=Gcaud1994.t4|Name=Gcaud1994.t4|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=648bp
MIASKKGGAGDRIVLDGYTPFLIDRLKQGLHIRLKQSVCSVSKAVKPRID
HALAMEEPHSSAHANRPAKRARTHTLSNWDADPEVAQRTILVTTRSGEVY
QGDFVVIAIPLGVLRSEHEESSVSFSPPLSIEKQEAIRGMGMGIHNKVVL
RFREEDIFWPPKVPQLNCLDPRFQFFNMHCYGKTATILVHVFCESGFANG
FWDLTDEGVLAEVLAVLGGMFCSPSENGTIKPQTNTTEQGSRIASNAIAK
RRIARLLHICENCRRPLEPTSSDADAPKINPVSCQNCGFVVQEDDALTAS
TRPERMTRSRANEMQQDIQLESNAPTANEDEITPPPKRFTWQTFPAPVEY
LVTRWEVDPFALGSYSYMPCGSDWNMIDHVGAPEPSGFMKPYIFFAGEHC
SDMGWQCVHGAYETGIRAAKQILACLRGESLNESLHDANKQGNSVADSEL
AQVGGASDSFWTPEREKALTRALIGYSDVYGNFGDVIDEISYALQSFKKE
PTQLTREEIRKLILERINERVEEHEPEAVAFMRFHRDEERHHIEIFPKPF
HEVYKRPRLVGLNGMKLKERYAEDIIRELRSYARPVFENQISYRETLRKI
ALVIYKKDGGLMTKRCLSEYLRTQEFGTGPQKELFLAKYLPDMQNKE*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1994.t4 ID=Gcaud1994.t4|Name=Gcaud1994.t4|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+ (Gracilaria caudata M_176_S67 male)
ATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTCTTAGATGG
CTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCATATTCGTT
TGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTCGAATAGAC
CATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCCAACAGGCC
TGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGCCGATCCAG
AGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTGAGGTGTAT
CAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTGCGGAGCGA
ACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCATAGAGAAGC
AAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAGTAGTGTTG
CGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCTCAGCTAAA
TTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTATGGAAAGA
CAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCGCAAATGGT
TTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTTGCAGTCCT
GGGGGGTATGTTTTGTTCCCCGTCTGAAAACGGTACCATCAAGCCGCAGA
CGAACACAACAGAGCAGGGATCACGAATTGCATCAAATGCGATTGCTAAG
CGTCGTATTGCGCGGTTGCTTCATATATGTGAGAACTGTAGGCGACCTTT
GGAGCCTACCAGTTCAGATGCAGATGCTCCAAAGATAAATCCCGTATCAT
GTCAAAACTGCGGATTTGTCGTACAGGAAGACGATGCTCTAACTGCTAGT
ACGCGACCAGAGCGTATGACAAGATCAAGAGCAAACGAGATGCAACAGGA
CATCCAGCTTGAATCCAATGCGCCAACTGCAAACGAAGACGAGATCACTC
CACCTCCAAAGCGATTCACATGGCAAACATTTCCGGCACCAGTGGAATAC
CTTGTCACAAGATGGGAAGTCGATCCGTTTGCTCTAGGATCATATTCGTA
CATGCCATGCGGTAGTGACTGGAACATGATAGATCATGTGGGTGCCCCTG
AGCCCAGTGGGTTCATGAAACCATACATATTCTTTGCAGGAGAGCACTGT
AGCGACATGGGCTGGCAATGTGTGCACGGTGCTTATGAGACTGGGATTCG
GGCTGCGAAGCAGATTTTGGCTTGTCTCCGTGGCGAGTCATTAAATGAAT
CTCTGCATGATGCCAACAAACAAGGCAATTCAGTTGCAGATTCAGAGCTT
GCCCAAGTCGGAGGAGCATCTGATTCCTTCTGGACCCCAGAGAGAGAAAA
GGCCCTCACAAGGGCGTTGATAGGTTACTCTGATGTTTATGGTAACTTCG
GTGATGTCATTGATGAAATCTCATATGCGTTGCAATCTTTTAAGAAGGAG
CCCACTCAGCTGACAAGAGAAGAAATCCGAAAACTAATTCTCGAGCGGAT
AAACGAGAGGGTTGAAGAGCACGAACCGGAGGCCGTGGCGTTCATGAGAT
TCCACCGAGATGAGGAACGTCATCACATAGAGATTTTCCCAAAGCCCTTC
CACGAAGTTTACAAGCGACCGAGACTCGTTGGGCTCAATGGAATGAAGTT
GAAAGAACGGTATGCTGAAGATATTATTCGTGAACTGCGTAGTTACGCAA
GGCCTGTGTTCGAAAACCAAATATCATACCGAGAAACGTTACGCAAGATT
GCGTTGGTCATATACAAGAAGGACGGTGGTCTCATGACAAAGAGGTGCTT
GTCCGAGTACTTACGGACCCAGGAGTTTGGTACAGGACCTCAGAAAGAGC
TTTTCCTAGCAAAATACTTGCCTGACATGCAGAATAAAGAATAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+

>Gcaud1994.t4 ID=Gcaud1994.t4|Name=Gcaud1994.t4|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1944bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:48952..50895+ (Gracilaria caudata M_176_S67 male)
ATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTCTTAGATGG
CTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCATATTCGTT
TGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTCGAATAGAC
CATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCCAACAGGCC
TGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGCCGATCCAG
AGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTGAGGTGTAT
CAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTGCGGAGCGA
ACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCATAGAGAAGC
AAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAGTAGTGTTG
CGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCTCAGCTAAA
TTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTATGGAAAGA
CAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCGCAAATGGT
TTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTTGCAGTCCT
GGGGGGTATGTTTTGTTCCCCGTCTGAAAACGGTACCATCAAGCCGCAGA
CGAACACAACAGAGCAGGGATCACGAATTGCATCAAATGCGATTGCTAAG
CGTCGTATTGCGCGGTTGCTTCATATATGTGAGAACTGTAGGCGACCTTT
GGAGCCTACCAGTTCAGATGCAGATGCTCCAAAGATAAATCCCGTATCAT
GTCAAAACTGCGGATTTGTCGTACAGGAAGACGATGCTCTAACTGCTAGT
ACGCGACCAGAGCGTATGACAAGATCAAGAGCAAACGAGATGCAACAGGA
CATCCAGCTTGAATCCAATGCGCCAACTGCAAACGAAGACGAGATCACTC
CACCTCCAAAGCGATTCACATGGCAAACATTTCCGGCACCAGTGGAATAC
CTTGTCACAAGATGGGAAGTCGATCCGTTTGCTCTAGGATCATATTCGTA
CATGCCATGCGGTAGTGACTGGAACATGATAGATCATGTGGGTGCCCCTG
AGCCCAGTGGGTTCATGAAACCATACATATTCTTTGCAGGAGAGCACTGT
AGCGACATGGGCTGGCAATGTGTGCACGGTGCTTATGAGACTGGGATTCG
GGCTGCGAAGCAGATTTTGGCTTGTCTCCGTGGCGAGTCATTAAATGAAT
CTCTGCATGATGCCAACAAACAAGGCAATTCAGTTGCAGATTCAGAGCTT
GCCCAAGTCGGAGGAGCATCTGATTCCTTCTGGACCCCAGAGAGAGAAAA
GGCCCTCACAAGGGCGTTGATAGGTTACTCTGATGTTTATGGTAACTTCG
GTGATGTCATTGATGAAATCTCATATGCGTTGCAATCTTTTAAGAAGGAG
CCCACTCAGCTGACAAGAGAAGAAATCCGAAAACTAATTCTCGAGCGGAT
AAACGAGAGGGTTGAAGAGCACGAACCGGAGGCCGTGGCGTTCATGAGAT
TCCACCGAGATGAGGAACGTCATCACATAGAGATTTTCCCAAAGCCCTTC
CACGAAGTTTACAAGCGACCGAGACTCGTTGGGCTCAATGGAATGAAGTT
GAAAGAACGGTATGCTGAAGATATTATTCGTGAACTGCGTAGTTACGCAA
GGCCTGTGTTCGAAAACCAAATATCATACCGAGAAACGTTACGCAAGATT
GCGTTGGTCATATACAAGAAGGACGGTGGTCTCATGACAAAGAGGTGCTT
GTCCGAGTACTTACGGACCCAGGAGTTTGGTACAGGACCTCAGAAAGAGC
TTTTCCTAGCAAAATACTTGCCTGACATGCAGAATAAAGAATAG