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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 8081.XP_008427698.1 |
| Preferred name | ppif |
| PFAMs | Pro_isomerase |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K09565 |
| KEGG Pathway | ko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145 |
| Evalue | 2.33e-48 |
| EggNOG OGs | COG0652@1|root,KOG0865@2759|Eukaryota,39W58@33154|Opisthokonta,3BIWC@33208|Metazoa,3D4YT@33213|Bilateria,48DF0@7711|Chordata,49A1I@7742|Vertebrata,49TBG@7898|Actinopterygii |
| EC | 5.2.1.8 |
| Description | PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko03110 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3167.t1.start1 | Gcaud3167.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_115_length_48887_cov_4.567628 19135..19137 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3167.t1.stop1 | Gcaud3167.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_115_length_48887_cov_4.567628 19993..19995 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3167.t1 ID=Gcaud3167.t1|Name=Gcaud3167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MGQAVSKSKSKSNPRPHITATFPGDPDHGQVVVRTTAVPTKVARPRLIHK
RIKCYLDVSIDGTPAGRIIVNLRPDVQPRTCENFRALCTGEHELSYQFCK
FHRIVPGFILQTGDVELKTKSKEGRGGRSIYGRSFADENLHKLSHNQYGV
LSMANAGPHTNNSQFMIVVDPKGTDWLDGKHTVFGHVAKESFPILTAIEE
CAQVFNRDDKQRARIIKTCQITDCGQL* back to topspliced messenger RNA >Gcaud3167.t1 ID=Gcaud3167.t1|Name=Gcaud3167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:19135..19995+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGCCAGGCCGTCTCGAAGAGCAAGTCAAAGTCAAACCCTAGGCCTCA
CATCACTGCTACCTTCCCAGGTGATCCAGACCATGGTCAGGTGGTTGTAC
GAACCACAGCCGTCCCCACCAAAGTCGCTCGGCCGCGTCTAATTCACAAG
CGCATAAAATGTTATCTGGATGTGTCCATAGATGGCACTCCAGCGGGTCG
AATTATCGTCAATTTGCGCCCAGACGTCCAACCTCGCACCTGCGAGAATT
TCCGTGCGTTATGCACAGGCGAACATGAACTCTCCTACCAATTTTGCAAG
TTCCATCGAATCGTTCCCGGCTTCATACTGCAAACGGGAGACGTCGAACT
GAAGACCAAGTCCAAGGAAGGACGTGGCGGTCGTTCCATATATGGTCGAT
CTTTCGCCGACGAAAATTTGCACAAGCTATCGCATAACCAATACGGCGTG
TTGAGTATGGCTAATGCCGGACCGCACACGAACAATTCGCAGTTCATGAT
CGTCGTTGATCCGAAAGGCACTGACTGGCTGGATGGTAAGCATACCGTCT
TCGGTCATGTAGCCAAGGAGTCGTTCCCAATCCTTACCGCCATCGAGGAA
TGCGCTCAAGTATTTAATAGGGATGACAAGCAAAGAGCTCGCATCATCAA
GACATGTCAAATAACCGATTGCGGACAACTATAG back to topprotein sequence of Gcaud3167.t1 >Gcaud3167.t1 ID=Gcaud3167.t1|Name=Gcaud3167.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MGQAVSKSKSKSNPRPHITATFPGDPDHGQVVVRTTAVPTKVARPRLIHK
RIKCYLDVSIDGTPAGRIIVNLRPDVQPRTCENFRALCTGEHELSYQFCK
FHRIVPGFILQTGDVELKTKSKEGRGGRSIYGRSFADENLHKLSHNQYGV
LSMANAGPHTNNSQFMIVVDPKGTDWLDGKHTVFGHVAKESFPILTAIEE
CAQVFNRDDKQRARIIKTCQITDCGQL* back to topmRNA from alignment at NODE_115_length_48887_cov_4.567628:19135..19995+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3167.t1 ID=Gcaud3167.t1|Name=Gcaud3167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:19135..19995+ (Gracilaria caudata M_176_S67 male)
ATGGGCCAGGCCGTCTCGAAGAGCAAGTCAAAGTCAAACCCTAGGCCTCA
CATCACTGCTACCTTCCCAGGTGATCCAGACCATGGTCGTAAGTTCGTCG
CCCTGTTCGAGCGTGATCGTCTTCACCGTGCGCTAACCTCCAATCCCCGT
TCGTTTTTTCGCAGAGGTGGTTGTACGAACCACAGCCGTCCCCACCAAAG
TCGCTCGGCCGCGTCTAATTCACAAGCGCATAAAATGTTATCTGGATGTG
TCCATAGATGGCACTCCAGCGGGTCGAATTATCGTCAATTTGCGCCCAGA
CGTCCAACCTCGCACCTGCGAGAATTTCCGTGCGTTATGCACAGGCGAAC
ATGAACTCTCCTACCAATTTTGCAAGTTCCATCGAATCGTTCCCGGCTTC
ATACTGCAAACGGGAGACGTCGAACTGAAGACCAAGTCCAAGGAAGGACG
TGGCGGTCGTTCCATATATGGTCGATCTTTCGCCGACGAAAATTTGCACA
AGCTATCGCATAACCAATACGGCGTGTTGAGTATGGCTAATGCCGGACCG
CACACGAACAATTCGCAGTTCATGATCGTCGTTGATCCGAAAGGCACTGA
CTGGCGTACGTTGCGCACTCCCACACAGACTGGCTCAACTCCCCAAACTC
GGCCTCTTTGCTTACTAACATCTTTTTTCTCTTTCTCGAACGGCCTGCGT
TGATAGTGGATGGTAAGCATACCGTCTTCGGTCATGTAGCCAAGGAGTCG
TTCCCAATCCTTACCGCCATCGAGGAATGCGCTCAAGTATTTAATAGGGA
TGACAAGCAAAGAGCTCGCATCATCAAGACATGTCAAATAACCGATTGCG
GACAACTATAG back to topCoding sequence (CDS) from alignment at NODE_115_length_48887_cov_4.567628:19135..19995+ >Gcaud3167.t1 ID=Gcaud3167.t1|Name=Gcaud3167.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_115_length_48887_cov_4.567628:19135..19995+ (Gracilaria caudata M_176_S67 male)
ATGGGCCAGGCCGTCTCGAAGAGCAAGTCAAAGTCAAACCCTAGGCCTCA
CATCACTGCTACCTTCCCAGGTGATCCAGACCATGGTCAGGTGGTTGTAC
GAACCACAGCCGTCCCCACCAAAGTCGCTCGGCCGCGTCTAATTCACAAG
CGCATAAAATGTTATCTGGATGTGTCCATAGATGGCACTCCAGCGGGTCG
AATTATCGTCAATTTGCGCCCAGACGTCCAACCTCGCACCTGCGAGAATT
TCCGTGCGTTATGCACAGGCGAACATGAACTCTCCTACCAATTTTGCAAG
TTCCATCGAATCGTTCCCGGCTTCATACTGCAAACGGGAGACGTCGAACT
GAAGACCAAGTCCAAGGAAGGACGTGGCGGTCGTTCCATATATGGTCGAT
CTTTCGCCGACGAAAATTTGCACAAGCTATCGCATAACCAATACGGCGTG
TTGAGTATGGCTAATGCCGGACCGCACACGAACAATTCGCAGTTCATGAT
CGTCGTTGATCCGAAAGGCACTGACTGGCTGGATGGTAAGCATACCGTCT
TCGGTCATGTAGCCAAGGAGTCGTTCCCAATCCTTACCGCCATCGAGGAA
TGCGCTCAAGTATTTAATAGGGATGACAAGCAAAGAGCTCGCATCATCAA
GACATGTCAAATAACCGATTGCGGACAACTATAG back to top
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