Gcaud347.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud347.t1
Unique Name	Gcaud347.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_574_length_21672_cov_4.615958	contig	NODE_574_length_21672_cov_4.615958:11486..12684 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173027.Mic7113_1317
PFAMs	DUF2235
Max annot lvl	1117\|Cyanobacteria
Evalue	2.46e-82
EggNOG OGs	COG3673@1\|root,COG3673@2\|Bacteria,1G1VC@1117\|Cyanobacteria,1H9I8@1150\|Oscillatoriales
Description	'Conserved protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud347	Gcaud347	Gracilaria caudata M_176_S67 male	gene	NODE_574_length_21672_cov_4.615958 11486..12684 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1	Gcaud347.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_574_length_21672_cov_4.615958 11486..12684 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1.stop1	Gcaud347.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_574_length_21672_cov_4.615958 11486..11488 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1.CDS1	Gcaud347.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_574_length_21672_cov_4.615958 11486..12497 -
Gcaud347.t1.CDS2	Gcaud347.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_574_length_21672_cov_4.615958 12578..12684 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1.exon1	Gcaud347.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_574_length_21672_cov_4.615958 11486..12497 -
Gcaud347.t1.exon2	Gcaud347.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_574_length_21672_cov_4.615958 12578..12684 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1.intron1	Gcaud347.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_574_length_21672_cov_4.615958 12498..12577 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud347.t1.start1	Gcaud347.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_574_length_21672_cov_4.615958 12682..12684 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_574_length_21672_cov_4.615958:11486..12684-
coding sequence from alignment at NODE_574_length_21672_cov_4.615958:11486..12684-

mRNA sequence

>Gcaud347.t1 ID=Gcaud347.t1|Name=Gcaud347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MAEEVSRGIATDAAPTNSPILPSKRICVFSDGSWNSPDLDCLSNVSYLAQ
AVQYAGPSGVPQVVFYDEGVGTEGDLVDKMKGGAMGVGIDMNIKQLYTFI
MLNYVEGDEIYLFGFSRGAYTVRSVAGMMYEAGLLYRNKLDFVTEAYELY
RDNKDVESETAVKFRADHGRRVPITALVCFDTVGALGIPAYAPFPFSLFS
DGWRYAFHDTTLSELIENAIHVVSIDEEMVPFEPTLMTANPKRGDSQLTQ
VYMPGRHGGVGGGSKSNEPLARNALKFVVDEMKRRGLGLDVDTRMVPDEY
RLDCVPSRRASRFSLFGLVGFTMGMRSRKIESFECLHEVVPKMYRALQWR
PGALEPFKDKLLEGAEDTKGGK*

spliced messenger RNA

>Gcaud347.t1 ID=Gcaud347.t1|Name=Gcaud347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_574_length_21672_cov_4.615958:11486..12684- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGAAGTGTCGAGGGGCATAGCAACCGACGCCGCGCCCACAAA
CAGTCCCATTCTTCCCTCGAAGCGTATCTGCGTGTTTTCCGATGGAAGCT
GGAACTCACCCGACTTGGACTGTCTCAGCAACGTTTCGTACCTCGCACAA
GCCGTTCAATATGCCGGTCCAAGCGGCGTACCGCAGGTCGTATTCTACGA
CGAGGGCGTTGGAACGGAAGGAGACCTCGTGGACAAAATGAAAGGCGGAG
CTATGGGCGTTGGCATTGACATGAACATCAAACAGCTGTACACCTTCATC
ATGCTCAACTACGTGGAGGGTGATGAAATCTATCTGTTCGGCTTCTCCCG
CGGTGCATACACGGTGCGTTCCGTGGCAGGAATGATGTACGAAGCCGGTC
TGCTGTACCGAAACAAACTGGATTTCGTCACCGAAGCGTACGAACTTTAC
CGTGATAACAAGGACGTGGAGTCTGAGACCGCTGTGAAGTTCCGTGCCGA
CCATGGCCGTCGAGTTCCCATCACGGCTCTTGTTTGTTTCGACACTGTGG
GCGCGTTGGGTATTCCGGCGTACGCTCCGTTTCCGTTCTCATTGTTTTCG
GATGGGTGGCGGTACGCGTTTCATGACACCACTCTGTCTGAACTGATTGA
GAACGCCATTCATGTGGTGAGCATCGATGAGGAAATGGTGCCGTTTGAGC
CAACGCTAATGACAGCAAACCCGAAGCGAGGCGACTCGCAACTGACGCAG
GTGTACATGCCCGGTCGTCACGGCGGCGTAGGCGGCGGCAGTAAGAGCAA
CGAACCGCTCGCCAGGAACGCACTCAAGTTTGTGGTGGACGAGATGAAGC
GCAGAGGACTCGGCTTGGATGTGGATACGCGCATGGTGCCAGACGAATAC
CGCCTGGATTGCGTTCCTTCCAGGAGGGCCTCCAGGTTCTCGTTGTTTGG
ACTGGTGGGCTTCACGATGGGCATGAGAAGCCGGAAGATCGAGTCGTTTG
AGTGTTTGCACGAGGTGGTTCCAAAGATGTACCGCGCCTTGCAGTGGCGT
CCCGGCGCATTGGAGCCGTTTAAGGACAAGCTGCTCGAAGGCGCGGAGGA
TACGAAGGGTGGAAAGTGA

protein sequence of Gcaud347.t1

>Gcaud347.t1 ID=Gcaud347.t1|Name=Gcaud347.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MAEEVSRGIATDAAPTNSPILPSKRICVFSDGSWNSPDLDCLSNVSYLAQ
AVQYAGPSGVPQVVFYDEGVGTEGDLVDKMKGGAMGVGIDMNIKQLYTFI
MLNYVEGDEIYLFGFSRGAYTVRSVAGMMYEAGLLYRNKLDFVTEAYELY
RDNKDVESETAVKFRADHGRRVPITALVCFDTVGALGIPAYAPFPFSLFS
DGWRYAFHDTTLSELIENAIHVVSIDEEMVPFEPTLMTANPKRGDSQLTQ
VYMPGRHGGVGGGSKSNEPLARNALKFVVDEMKRRGLGLDVDTRMVPDEY
RLDCVPSRRASRFSLFGLVGFTMGMRSRKIESFECLHEVVPKMYRALQWR
PGALEPFKDKLLEGAEDTKGGK*

mRNA from alignment at NODE_574_length_21672_cov_4.615958:11486..12684-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud347.t1 ID=Gcaud347.t1|Name=Gcaud347.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1199bp|location=Sequence derived from alignment at NODE_574_length_21672_cov_4.615958:11486..12684- (Gracilaria caudata M_176_S67 male)
ATGGCCGAGGAAGTGTCGAGGGGCATAGCAACCGACGCCGCGCCCACAAA
CAGTCCCATTCTTCCCTCGAAGCGTATCTGCGTGTTTTCCGATGGAAGCT
GGAACTCGTACGTACTCATGTCCTTCGAAAGCTTCAAGGATCTGCTGCAA
AACTAACTCATCTGCCGTTTACCTCGCATCCTCAAAGACCCGACTTGGAC
TGTCTCAGCAACGTTTCGTACCTCGCACAAGCCGTTCAATATGCCGGTCC
AAGCGGCGTACCGCAGGTCGTATTCTACGACGAGGGCGTTGGAACGGAAG
GAGACCTCGTGGACAAAATGAAAGGCGGAGCTATGGGCGTTGGCATTGAC
ATGAACATCAAACAGCTGTACACCTTCATCATGCTCAACTACGTGGAGGG
TGATGAAATCTATCTGTTCGGCTTCTCCCGCGGTGCATACACGGTGCGTT
CCGTGGCAGGAATGATGTACGAAGCCGGTCTGCTGTACCGAAACAAACTG
GATTTCGTCACCGAAGCGTACGAACTTTACCGTGATAACAAGGACGTGGA
GTCTGAGACCGCTGTGAAGTTCCGTGCCGACCATGGCCGTCGAGTTCCCA
TCACGGCTCTTGTTTGTTTCGACACTGTGGGCGCGTTGGGTATTCCGGCG
TACGCTCCGTTTCCGTTCTCATTGTTTTCGGATGGGTGGCGGTACGCGTT
TCATGACACCACTCTGTCTGAACTGATTGAGAACGCCATTCATGTGGTGA
GCATCGATGAGGAAATGGTGCCGTTTGAGCCAACGCTAATGACAGCAAAC
CCGAAGCGAGGCGACTCGCAACTGACGCAGGTGTACATGCCCGGTCGTCA
CGGCGGCGTAGGCGGCGGCAGTAAGAGCAACGAACCGCTCGCCAGGAACG
CACTCAAGTTTGTGGTGGACGAGATGAAGCGCAGAGGACTCGGCTTGGAT
GTGGATACGCGCATGGTGCCAGACGAATACCGCCTGGATTGCGTTCCTTC
CAGGAGGGCCTCCAGGTTCTCGTTGTTTGGACTGGTGGGCTTCACGATGG
GCATGAGAAGCCGGAAGATCGAGTCGTTTGAGTGTTTGCACGAGGTGGTT
CCAAAGATGTACCGCGCCTTGCAGTGGCGTCCCGGCGCATTGGAGCCGTT
TAAGGACAAGCTGCTCGAAGGCGCGGAGGATACGAAGGGTGGAAAGTGA

Coding sequence (CDS) from alignment at NODE_574_length_21672_cov_4.615958:11486..12684-

>Gcaud347.t1 ID=Gcaud347.t1|Name=Gcaud347.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_574_length_21672_cov_4.615958:11486..12684- (Gracilaria caudata M_176_S67 male)
ATGGCCGAGGAAGTGTCGAGGGGCATAGCAACCGACGCCGCGCCCACAAA
CAGTCCCATTCTTCCCTCGAAGCGTATCTGCGTGTTTTCCGATGGAAGCT
GGAACTCACCCGACTTGGACTGTCTCAGCAACGTTTCGTACCTCGCACAA
GCCGTTCAATATGCCGGTCCAAGCGGCGTACCGCAGGTCGTATTCTACGA
CGAGGGCGTTGGAACGGAAGGAGACCTCGTGGACAAAATGAAAGGCGGAG
CTATGGGCGTTGGCATTGACATGAACATCAAACAGCTGTACACCTTCATC
ATGCTCAACTACGTGGAGGGTGATGAAATCTATCTGTTCGGCTTCTCCCG
CGGTGCATACACGGTGCGTTCCGTGGCAGGAATGATGTACGAAGCCGGTC
TGCTGTACCGAAACAAACTGGATTTCGTCACCGAAGCGTACGAACTTTAC
CGTGATAACAAGGACGTGGAGTCTGAGACCGCTGTGAAGTTCCGTGCCGA
CCATGGCCGTCGAGTTCCCATCACGGCTCTTGTTTGTTTCGACACTGTGG
GCGCGTTGGGTATTCCGGCGTACGCTCCGTTTCCGTTCTCATTGTTTTCG
GATGGGTGGCGGTACGCGTTTCATGACACCACTCTGTCTGAACTGATTGA
GAACGCCATTCATGTGGTGAGCATCGATGAGGAAATGGTGCCGTTTGAGC
CAACGCTAATGACAGCAAACCCGAAGCGAGGCGACTCGCAACTGACGCAG
GTGTACATGCCCGGTCGTCACGGCGGCGTAGGCGGCGGCAGTAAGAGCAA
CGAACCGCTCGCCAGGAACGCACTCAAGTTTGTGGTGGACGAGATGAAGC
GCAGAGGACTCGGCTTGGATGTGGATACGCGCATGGTGCCAGACGAATAC
CGCCTGGATTGCGTTCCTTCCAGGAGGGCCTCCAGGTTCTCGTTGTTTGG
ACTGGTGGGCTTCACGATGGGCATGAGAAGCCGGAAGATCGAGTCGTTTG
AGTGTTTGCACGAGGTGGTTCCAAAGATGTACCGCGCCTTGCAGTGGCGT
CCCGGCGCATTGGAGCCGTTTAAGGACAAGCTGCTCGAAGGCGCGGAGGA
TACGAAGGGTGGAAAGTGA