Gcaud8288.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8288.t1
Unique NameGcaud8288.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length283
Homology
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BLAST of Gcaud8288.t1 vs. uniprot
Match: A0A2V3IXF7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXF7_9FLOR)

HSP 1 Score: 371 bits (953), Expect = 5.250e-127
Identity = 192/282 (68.09%), Postives = 222/282 (78.72%), Query Frame = 0 
Query:    1 MLRPSSLIDLPDDVLLRILSNSGSLREQVGTAFRLASVCNRLRRLIFTNYLAKLSHISSDAIYTLSLADANAARTAIDSMFVATVSLKTLNLSGCAPGLISHRAISSLVRVARHSLVEVNFAHCNLMSDDVLQPLMTCPNLKRLILPSCRITGSMFRHSGTVAPVEELDLSWVHSLTQGGVQAVATIVTLKRLCFKGCDSVDDDAFQAFSKSDVSKSLEVVSLAFCPISNNCLLNFLGCAPRLKELVLAENRGNIWPQGLYTQAGIDAIRARHPAVKIAFIS 282
            +LR ++LIDLPDDVLLRILS  G LR QVGTAFRL  VC RLRRL+  +YL  L H++SDAIYTLSLADANAAR A+D+MF AT SLKTLNLSGC+P LIS   ISSLV VA+HSL EVNFAHC L +D+VL P MTCPNL+ LILPS RITGSMF H+  VAP+E+LDLSWVHSLT  GV AVA IVTLK LC KGCD+V+ ++  AF  SD+ KSL  VS AFCP+ N CL++FL   P LKEL+LAENRGNIWPQGLYT  GI AIR + P V + F++
Sbjct:    2 LLRAANLIDLPDDVLLRILSLCGPLRAQVGTAFRLGCVCVRLRRLLLRHYLPALCHVTSDAIYTLSLADANAARAALDAMFAATSSLKTLNLSGCSPRLISQTTISSLVAVAKHSLTEVNFAHCAL-TDNVLAPFMTCPNLRTLILPSSRITGSMFLHAKRVAPLEKLDLSWVHSLTPEGVVAVANIVTLKTLCLKGCDAVNRESLNAFLNSDIRKSLRTVSFAFCPLRNQCLIDFLRRTPYLKELILAENRGNIWPQGLYTATGIHAIRLQFPHVNVTFVT 282
The following BLAST results are available for this feature:
BLAST of Gcaud8288.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IXF7_9FLOR5.250e-12768.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 187..212
e-value: 29.0
score: 10.9
coord: 84..111
e-value: 48.0
score: 9.2
coord: 138..162
e-value: 74.0
score: 7.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 5..280
e-value: 2.6E-27
score: 97.7
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 36..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_572_length_21721_cov_4.382386contigNODE_572_length_21721_cov_4.382386:7571..8419 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8288.t1Gcaud8288.t1Gracilaria caudata M_176_S67 malemRNANODE_572_length_21721_cov_4.382386 7571..8419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MLRPSSLIDLPDDVLLRILSNSGSLREQVGTAFRLASVCNRLRRLIFTNY
LAKLSHISSDAIYTLSLADANAARTAIDSMFVATVSLKTLNLSGCAPGLI
SHRAISSLVRVARHSLVEVNFAHCNLMSDDVLQPLMTCPNLKRLILPSCR
ITGSMFRHSGTVAPVEELDLSWVHSLTQGGVQAVATIVTLKRLCFKGCDS
VDDDAFQAFSKSDVSKSLEVVSLAFCPISNNCLLNFLGCAPRLKELVLAE
NRGNIWPQGLYTQAGIDAIRARHPAVKIAFIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf