Gcaud8285.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8285.t1
Unique NameGcaud8285.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_572_length_21721_cov_4.382386contigNODE_572_length_21721_cov_4.382386:2401..3327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708895.1
Preferred nameTDH3
PFAMsGp_dh_C,Gp_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00149,RC00523
KEGG koko:K00134,ko:K01869
KEGG ReactionR01061,R03657
KEGG Pathwayko00010,ko00710,ko00970,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00710,map00970,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00359,M00360,M00552
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003824,GO:0004365,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005811,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006915,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009277,GO:0009435,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0012501,GO:0015886,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016491,GO:0016620,GO:0016903,GO:0017144,GO:0018130,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0023051,GO:0023056,GO:0030312,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032787,GO:0032872,GO:0032874,GO:0032991,GO:0033554,GO:0034404,GO:0034599,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042325,GO:0042327,GO:0042866,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043408,GO:0043410,GO:0043436,GO:0043891,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051247,GO:0051716,GO:0055086,GO:0055114,GO:0060255,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0065007,GO:0070302,GO:0070304,GO:0070887,GO:0070994,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0072593,GO:0080090,GO:0080134,GO:0080135,GO:0090407,GO:0097159,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901678,GO:1902531,GO:1902533,GO:1990315,GO:1990841
Evalue3.1e-167
EggNOG OGsCOG0057@1|root,KOG0657@2759|Eukaryota
EC1.2.1.12,6.1.1.4
Descriptionglyceraldehyde-3-phosphate dehydrogenase (NAD(P) ) (phosphorylating) activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8285Gcaud8285Gracilaria caudata M_176_S67 malegeneNODE_572_length_21721_cov_4.382386 2401..3327 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8285.t1.start1Gcaud8285.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_572_length_21721_cov_4.382386 2401..2403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8285.t1.CDS1Gcaud8285.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 2401..3327 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8285.t1.exon1Gcaud8285.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 2401..3327 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8285.t1.stop1Gcaud8285.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_572_length_21721_cov_4.382386 3325..3327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8285.t1Gcaud8285.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_572_length_21721_cov_4.382386 2401..3327 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8285.t1 ID=Gcaud8285.t1|Name=Gcaud8285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MNVVAINDPFIALEYMAYMFKYDSTHGRYKGTVDIKDGKLIVNGKPIAVY
GHRDPAEIPWAEAGAEYVVESTGVFTLKEKAEKHFKGGAKKVIISAPSKD
APMFVCGVNADKYTPDLDIISNASCTTNCLAPLVKVIHEKYGIEEGLMTT
VHATTASQKTVDGPSQKDWRGGRGAGANIIPSSTGAAKAVGKVLPELNGK
LTGMAFRVPTPDVSVVDLTVRLVNETTYDDIKATMKAAAEDSLKGILKYT
EDSVVSTDFIHEDASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDL
ISHIAKVQ*
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spliced messenger RNA

>Gcaud8285.t1 ID=Gcaud8285.t1|Name=Gcaud8285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:2401..3327+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTTGTGGCTATCAATGACCCGTTCATTGCGCTCGAATACATGGC
GTACATGTTCAAGTATGATTCCACACATGGTCGTTACAAAGGCACTGTGG
ACATAAAGGACGGCAAACTGATTGTGAACGGAAAGCCCATTGCTGTGTAC
GGACATCGTGACCCCGCAGAGATTCCCTGGGCAGAAGCTGGAGCCGAGTA
CGTGGTGGAATCCACCGGTGTGTTCACGCTCAAGGAAAAGGCTGAGAAGC
ATTTCAAGGGCGGCGCTAAGAAGGTGATCATCTCTGCGCCGTCCAAGGAT
GCGCCCATGTTTGTGTGCGGTGTGAATGCAGACAAGTACACGCCCGATCT
GGACATCATCTCCAATGCGTCTTGCACCACCAACTGCCTCGCGCCGCTTG
TGAAGGTGATTCACGAGAAGTACGGTATTGAGGAGGGTTTGATGACTACT
GTGCATGCTACTACCGCCTCGCAGAAGACCGTGGACGGTCCCTCGCAGAA
GGACTGGCGCGGCGGACGTGGAGCTGGTGCAAACATCATCCCGTCCAGCA
CAGGAGCCGCCAAGGCTGTCGGTAAGGTACTGCCCGAGCTGAACGGAAAG
TTGACAGGAATGGCGTTCCGTGTGCCCACTCCCGATGTGTCGGTGGTGGA
CCTGACTGTTCGTCTGGTGAACGAAACTACGTACGACGATATCAAGGCCA
CCATGAAGGCTGCGGCTGAAGACTCTCTCAAGGGTATCCTCAAGTACACT
GAGGATTCCGTGGTGAGCACCGACTTCATCCACGAGGACGCGTCGTGCGT
GTTTGATGCCGGCGCCGGCATCATGTTGAACAGCAGGTTTTGCAAGCTGG
TTGCCTGGTACGACAACGAGTGGGGATACTCCAACCGCGTGGTGGACCTG
ATTTCGCACATCGCCAAGGTGCAGTGA
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protein sequence of Gcaud8285.t1

>Gcaud8285.t1 ID=Gcaud8285.t1|Name=Gcaud8285.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MNVVAINDPFIALEYMAYMFKYDSTHGRYKGTVDIKDGKLIVNGKPIAVY
GHRDPAEIPWAEAGAEYVVESTGVFTLKEKAEKHFKGGAKKVIISAPSKD
APMFVCGVNADKYTPDLDIISNASCTTNCLAPLVKVIHEKYGIEEGLMTT
VHATTASQKTVDGPSQKDWRGGRGAGANIIPSSTGAAKAVGKVLPELNGK
LTGMAFRVPTPDVSVVDLTVRLVNETTYDDIKATMKAAAEDSLKGILKYT
EDSVVSTDFIHEDASCVFDAGAGIMLNSRFCKLVAWYDNEWGYSNRVVDL
ISHIAKVQ*
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mRNA from alignment at NODE_572_length_21721_cov_4.382386:2401..3327+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8285.t1 ID=Gcaud8285.t1|Name=Gcaud8285.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:2401..3327+ (Gracilaria caudata M_176_S67 male)
ATGAACGTTGTGGCTATCAATGACCCGTTCATTGCGCTCGAATACATGGC
GTACATGTTCAAGTATGATTCCACACATGGTCGTTACAAAGGCACTGTGG
ACATAAAGGACGGCAAACTGATTGTGAACGGAAAGCCCATTGCTGTGTAC
GGACATCGTGACCCCGCAGAGATTCCCTGGGCAGAAGCTGGAGCCGAGTA
CGTGGTGGAATCCACCGGTGTGTTCACGCTCAAGGAAAAGGCTGAGAAGC
ATTTCAAGGGCGGCGCTAAGAAGGTGATCATCTCTGCGCCGTCCAAGGAT
GCGCCCATGTTTGTGTGCGGTGTGAATGCAGACAAGTACACGCCCGATCT
GGACATCATCTCCAATGCGTCTTGCACCACCAACTGCCTCGCGCCGCTTG
TGAAGGTGATTCACGAGAAGTACGGTATTGAGGAGGGTTTGATGACTACT
GTGCATGCTACTACCGCCTCGCAGAAGACCGTGGACGGTCCCTCGCAGAA
GGACTGGCGCGGCGGACGTGGAGCTGGTGCAAACATCATCCCGTCCAGCA
CAGGAGCCGCCAAGGCTGTCGGTAAGGTACTGCCCGAGCTGAACGGAAAG
TTGACAGGAATGGCGTTCCGTGTGCCCACTCCCGATGTGTCGGTGGTGGA
CCTGACTGTTCGTCTGGTGAACGAAACTACGTACGACGATATCAAGGCCA
CCATGAAGGCTGCGGCTGAAGACTCTCTCAAGGGTATCCTCAAGTACACT
GAGGATTCCGTGGTGAGCACCGACTTCATCCACGAGGACGCGTCGTGCGT
GTTTGATGCCGGCGCCGGCATCATGTTGAACAGCAGGTTTTGCAAGCTGG
TTGCCTGGTACGACAACGAGTGGGGATACTCCAACCGCGTGGTGGACCTG
ATTTCGCACATCGCCAAGGTGCAGTGA
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Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:2401..3327+

>Gcaud8285.t1 ID=Gcaud8285.t1|Name=Gcaud8285.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:2401..3327+ (Gracilaria caudata M_176_S67 male)
ATGAACGTTGTGGCTATCAATGACCCGTTCATTGCGCTCGAATACATGGC
GTACATGTTCAAGTATGATTCCACACATGGTCGTTACAAAGGCACTGTGG
ACATAAAGGACGGCAAACTGATTGTGAACGGAAAGCCCATTGCTGTGTAC
GGACATCGTGACCCCGCAGAGATTCCCTGGGCAGAAGCTGGAGCCGAGTA
CGTGGTGGAATCCACCGGTGTGTTCACGCTCAAGGAAAAGGCTGAGAAGC
ATTTCAAGGGCGGCGCTAAGAAGGTGATCATCTCTGCGCCGTCCAAGGAT
GCGCCCATGTTTGTGTGCGGTGTGAATGCAGACAAGTACACGCCCGATCT
GGACATCATCTCCAATGCGTCTTGCACCACCAACTGCCTCGCGCCGCTTG
TGAAGGTGATTCACGAGAAGTACGGTATTGAGGAGGGTTTGATGACTACT
GTGCATGCTACTACCGCCTCGCAGAAGACCGTGGACGGTCCCTCGCAGAA
GGACTGGCGCGGCGGACGTGGAGCTGGTGCAAACATCATCCCGTCCAGCA
CAGGAGCCGCCAAGGCTGTCGGTAAGGTACTGCCCGAGCTGAACGGAAAG
TTGACAGGAATGGCGTTCCGTGTGCCCACTCCCGATGTGTCGGTGGTGGA
CCTGACTGTTCGTCTGGTGAACGAAACTACGTACGACGATATCAAGGCCA
CCATGAAGGCTGCGGCTGAAGACTCTCTCAAGGGTATCCTCAAGTACACT
GAGGATTCCGTGGTGAGCACCGACTTCATCCACGAGGACGCGTCGTGCGT
GTTTGATGCCGGCGCCGGCATCATGTTGAACAGCAGGTTTTGCAAGCTGG
TTGCCTGGTACGACAACGAGTGGGGATACTCCAACCGCGTGGTGGACCTG
ATTTCGCACATCGCCAAGGTGCAGTGA
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