Gcaud7289.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7289.t1
Unique Name	Gcaud7289.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	208

Homology

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BLAST of Gcaud7289.t1 vs. uniprot
Match: A0A2V3J6B7_9FLOR (Transmembrane emp24 domain-containing protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B7_9FLOR)

HSP 1 Score: 270 bits (691), Expect = 1.440e-89
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0

Query:   16 SNVPTAESFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMRRKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTHLYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            +N P   +FGI IPPGGMEHCFFREVH N H+Y+HYVARETINI + D  + +LY K+SV++GSFDF A  DGSYRICLSVELMRRKPTI KFRFLVVDP+V  D VAT  Q H A  L + VK LSD+VLFRTHLYSDTA ETDETLKSS++L  R+VA+ECVAALLAA+SQVSY+RK+L++SRSR QRMV
Sbjct:   14 TNAPVVRAFGIQIPPGGMEHCFFREVHVNDHVYVHYVARETINISVKDGNERILYQKKSVVQGSFDFAAQEDGSYRICLSVELMRRKPTIAKFRFLVVDPSVLGDKVATSGQAHKANHLSNKVKSLSDQVLFRTHLYSDTAYETDETLKSSVTLAARMVALECVAALLAAISQVSYIRKVLFASRSRRQRMV 205

[Close]

BLAST of Gcaud7289.t1 vs. uniprot
Match: R7Q4A8_CHOCR (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4A8_CHOCR)

HSP 1 Score: 172 bits (437), Expect = 4.760e-51
Identity = 92/187 (49.20%), Postives = 126/187 (67.38%), Query Frame = 0

Query:   21 AESFGIHIPPGGMEHCFFREVHANYHIYIHYVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMRRKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTHLYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSRSRLQRMV 207
            A SFGI +P  G + CF+RE+ +N H+ +HYVARET++I +       +Y K SVL+G   F A  DG Y+ C+S +  RR PTI KFRFL   P V +  +A   Q   A  L  ++ ++SD+VL+  HLY+DT   TDETLKSSI+LTGRL A+ECVA L+ A++QV YVR +L ++RS++QRMV
Sbjct:   18 ALSFGIQVP-AGEKSCFYRELRSNMHVSLHYVARETVSIAVQAPSKEGIYSKTSVLQGEHSFNAKEDGPYQFCVSTDSTRRAPTIAKFRFLAFPPDVFNSDIAKSTQAFDARMLTLELSKISDKVLYSAHLYADTTSATDETLKSSIALTGRLAALECVAVLVVALAQVKYVRNILSATRSKVQRMV 203

The following BLAST results are available for this feature:

BLAST of Gcaud7289.t1 vs. uniprot

BLAST of Gcaud7289.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J6B7_9FLOR	1.440e-89	71.35	Transmembrane emp24 domain-containing protein 6 n=...	[more]
R7Q4A8_CHOCR	4.760e-51	49.20	GOLD domain-containing protein n=1 Tax=Chondrus cr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009038	GOLD domain	SMART	SM01190	EMP24_GP25L_2	coord: 23..197 e-value: 4.7E-4 score: 27.4
IPR009038	GOLD domain	PFAM	PF01105	EMP24_GP25L	coord: 24..196 e-value: 4.9E-10 score: 39.7
IPR009038	GOLD domain	PROSITE	PS50866	GOLD	coord: 34..151 score: 9.575807
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 173..192
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 193..207
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_568_length_21789_cov_4.884183	contig	NODE_568_length_21789_cov_4.884183:3457..4080 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7289.t1	Gcaud7289.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_568_length_21789_cov_4.884183 3457..4080 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7289.t1 ID=Gcaud7289.t1|Name=Gcaud7289.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MRTFTLILLTVAIAFSNVPTAESFGIHIPPGGMEHCFFREVHANYHIYIH
YVARETINIKLLDTKDAVLYGKRSVLRGSFDFQAINDGSYRICLSVELMR
RKPTITKFRFLVVDPTVSSDTVATLEQVHSATKLCDDVKRLSDRVLFRTH
LYSDTALETDETLKSSISLTGRLVAVECVAALLAAVSQVSYVRKMLWSSR
SRLQRMV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009038	GOLD_dom