Gcaud1456.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1456.t1
Unique NameGcaud1456.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:5735..7099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS096CT
PFAMsATP-sulfurylase,PUA_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K00958,ko:K13811
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176,M00596
GOsGO:0000103,GO:0001887,GO:0003674,GO:0003824,GO:0004020,GO:0004779,GO:0004781,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006790,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009719,GO:0009725,GO:0009735,GO:0009970,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0022607,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0042221,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:0051259,GO:0051716,GO:0065003,GO:0070206,GO:0070566,GO:0071496,GO:0071840,GO:0071944
Evalue5.07e-200
EggNOG OGsCOG2046@1|root,KOG0636@2759|Eukaryota
EC2.7.1.25,2.7.7.4
Descriptionsulfate adenylyltransferase (ATP) activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1456Gcaud1456Gracilaria caudata M_176_S67 malegeneNODE_566_length_21798_cov_4.589994 5735..7099 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1456.t1.start1Gcaud1456.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_566_length_21798_cov_4.589994 5735..5737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1456.t1.CDS1Gcaud1456.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 5735..7099 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1456.t1.exon1Gcaud1456.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 5735..7099 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1456.t1.stop1Gcaud1456.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_566_length_21798_cov_4.589994 7097..7099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1456.t1Gcaud1456.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_566_length_21798_cov_4.589994 5735..7099 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1456.t1 ID=Gcaud1456.t1|Name=Gcaud1456.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=455bp
MTLAFVFSSPIVRPSVASAAVSSSSSSSFVSTPGVSHRVRGLRNRAPVVA
TVAPPTTVADDVVELLVPEALRPAKLAEAQSLPSITVTDVDMQWIHVLAE
GWATPLKGFMRESEYLQSQHFNALRMPDGSLTNMSIPIVLALNDEQKAQL
ENRAAFAIKSPEGEVVAIMRNFEIYVHNKEERCARTFGITDERHPYTKFI
YESGDYLVGGDLEVVKDITYNDGLDEYRLTPRQLREEYKKRNADAVFVFQ
LRNPIHNGHALLMTSCREELIARGFKNPVLLVHQIGGKVKGDDIPLSVRI
QQNKRVLAEGVLDPNSTLLGIFPSPMLYAGPTEVQWHAKARMNAGCQYYI
VGRDPAGMKHPNGERDMFDAWHGKSVLGMAPGLENLEILPFRVAAYDKTI
GRMSFFDPSRADDFVFISGTKMRKFASSGETPPDGFMAPTAWKVLVDYYA
TKKQ*
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spliced messenger RNA

>Gcaud1456.t1 ID=Gcaud1456.t1|Name=Gcaud1456.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:5735..7099+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCGCATTCGTTTTCTCGTCACCAATCGTTCGGCCGTCAGTAGC
TTCGGCTGCAGTCTCCTCTTCGTCAAGCTCGTCCTTCGTCTCCACACCCG
GAGTCTCGCACCGTGTCCGAGGCCTCCGGAACAGGGCGCCGGTTGTGGCG
ACAGTCGCTCCGCCGACTACTGTCGCGGATGATGTCGTTGAGCTTCTCGT
CCCAGAGGCGCTGCGCCCGGCAAAGTTGGCTGAAGCCCAATCGTTGCCGT
CCATAACCGTAACTGACGTCGATATGCAATGGATTCATGTTCTTGCTGAA
GGATGGGCTACTCCTCTTAAGGGCTTCATGCGTGAGAGCGAGTATTTGCA
GAGTCAGCATTTCAACGCTCTTCGCATGCCAGATGGCTCTTTGACTAACA
TGAGCATCCCAATCGTGCTCGCTCTGAATGATGAACAGAAGGCACAGTTG
GAAAACCGTGCAGCCTTTGCGATTAAATCTCCAGAGGGTGAGGTTGTGGC
TATAATGAGGAACTTCGAAATTTACGTTCACAACAAGGAGGAGCGCTGCG
CACGTACCTTTGGTATCACTGATGAACGTCACCCGTACACCAAGTTTATT
TATGAGAGCGGGGATTACCTTGTCGGCGGCGACCTGGAGGTTGTCAAAGA
CATCACGTACAACGATGGCCTTGACGAATACAGACTTACACCCCGTCAGC
TGAGAGAAGAGTACAAGAAGAGAAACGCTGATGCCGTGTTTGTCTTCCAG
CTGCGCAATCCTATTCATAATGGCCATGCACTGCTTATGACATCTTGCCG
CGAGGAGCTCATCGCCCGCGGCTTTAAGAATCCAGTGTTGTTGGTGCATC
AAATTGGTGGCAAAGTGAAAGGTGATGATATTCCACTTTCTGTCCGTATA
CAACAGAACAAGCGTGTCCTTGCCGAAGGAGTTTTGGATCCGAACTCTAC
CCTGTTGGGAATTTTCCCAAGCCCCATGTTATACGCTGGTCCGACAGAGG
TTCAATGGCACGCCAAGGCGCGAATGAACGCCGGCTGCCAATATTATATC
GTCGGCCGTGATCCTGCGGGCATGAAACATCCGAATGGGGAAAGGGATAT
GTTTGATGCATGGCATGGAAAGAGTGTTCTTGGCATGGCCCCAGGACTTG
AAAACTTGGAAATCCTTCCCTTCCGTGTTGCAGCATATGATAAGACTATT
GGCAGAATGTCCTTCTTTGATCCCTCCAGAGCTGATGACTTCGTGTTTAT
ATCCGGGACGAAGATGCGCAAGTTTGCTTCCTCTGGTGAAACTCCGCCCG
ATGGTTTCATGGCTCCAACTGCATGGAAAGTTTTGGTTGACTACTATGCT
ACAAAGAAGCAATAG
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protein sequence of Gcaud1456.t1

>Gcaud1456.t1 ID=Gcaud1456.t1|Name=Gcaud1456.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=455bp
MTLAFVFSSPIVRPSVASAAVSSSSSSSFVSTPGVSHRVRGLRNRAPVVA
TVAPPTTVADDVVELLVPEALRPAKLAEAQSLPSITVTDVDMQWIHVLAE
GWATPLKGFMRESEYLQSQHFNALRMPDGSLTNMSIPIVLALNDEQKAQL
ENRAAFAIKSPEGEVVAIMRNFEIYVHNKEERCARTFGITDERHPYTKFI
YESGDYLVGGDLEVVKDITYNDGLDEYRLTPRQLREEYKKRNADAVFVFQ
LRNPIHNGHALLMTSCREELIARGFKNPVLLVHQIGGKVKGDDIPLSVRI
QQNKRVLAEGVLDPNSTLLGIFPSPMLYAGPTEVQWHAKARMNAGCQYYI
VGRDPAGMKHPNGERDMFDAWHGKSVLGMAPGLENLEILPFRVAAYDKTI
GRMSFFDPSRADDFVFISGTKMRKFASSGETPPDGFMAPTAWKVLVDYYA
TKKQ*
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mRNA from alignment at NODE_566_length_21798_cov_4.589994:5735..7099+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1456.t1 ID=Gcaud1456.t1|Name=Gcaud1456.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:5735..7099+ (Gracilaria caudata M_176_S67 male)
ATGACTCTCGCATTCGTTTTCTCGTCACCAATCGTTCGGCCGTCAGTAGC
TTCGGCTGCAGTCTCCTCTTCGTCAAGCTCGTCCTTCGTCTCCACACCCG
GAGTCTCGCACCGTGTCCGAGGCCTCCGGAACAGGGCGCCGGTTGTGGCG
ACAGTCGCTCCGCCGACTACTGTCGCGGATGATGTCGTTGAGCTTCTCGT
CCCAGAGGCGCTGCGCCCGGCAAAGTTGGCTGAAGCCCAATCGTTGCCGT
CCATAACCGTAACTGACGTCGATATGCAATGGATTCATGTTCTTGCTGAA
GGATGGGCTACTCCTCTTAAGGGCTTCATGCGTGAGAGCGAGTATTTGCA
GAGTCAGCATTTCAACGCTCTTCGCATGCCAGATGGCTCTTTGACTAACA
TGAGCATCCCAATCGTGCTCGCTCTGAATGATGAACAGAAGGCACAGTTG
GAAAACCGTGCAGCCTTTGCGATTAAATCTCCAGAGGGTGAGGTTGTGGC
TATAATGAGGAACTTCGAAATTTACGTTCACAACAAGGAGGAGCGCTGCG
CACGTACCTTTGGTATCACTGATGAACGTCACCCGTACACCAAGTTTATT
TATGAGAGCGGGGATTACCTTGTCGGCGGCGACCTGGAGGTTGTCAAAGA
CATCACGTACAACGATGGCCTTGACGAATACAGACTTACACCCCGTCAGC
TGAGAGAAGAGTACAAGAAGAGAAACGCTGATGCCGTGTTTGTCTTCCAG
CTGCGCAATCCTATTCATAATGGCCATGCACTGCTTATGACATCTTGCCG
CGAGGAGCTCATCGCCCGCGGCTTTAAGAATCCAGTGTTGTTGGTGCATC
AAATTGGTGGCAAAGTGAAAGGTGATGATATTCCACTTTCTGTCCGTATA
CAACAGAACAAGCGTGTCCTTGCCGAAGGAGTTTTGGATCCGAACTCTAC
CCTGTTGGGAATTTTCCCAAGCCCCATGTTATACGCTGGTCCGACAGAGG
TTCAATGGCACGCCAAGGCGCGAATGAACGCCGGCTGCCAATATTATATC
GTCGGCCGTGATCCTGCGGGCATGAAACATCCGAATGGGGAAAGGGATAT
GTTTGATGCATGGCATGGAAAGAGTGTTCTTGGCATGGCCCCAGGACTTG
AAAACTTGGAAATCCTTCCCTTCCGTGTTGCAGCATATGATAAGACTATT
GGCAGAATGTCCTTCTTTGATCCCTCCAGAGCTGATGACTTCGTGTTTAT
ATCCGGGACGAAGATGCGCAAGTTTGCTTCCTCTGGTGAAACTCCGCCCG
ATGGTTTCATGGCTCCAACTGCATGGAAAGTTTTGGTTGACTACTATGCT
ACAAAGAAGCAATAG
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Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:5735..7099+

>Gcaud1456.t1 ID=Gcaud1456.t1|Name=Gcaud1456.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1365bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:5735..7099+ (Gracilaria caudata M_176_S67 male)
ATGACTCTCGCATTCGTTTTCTCGTCACCAATCGTTCGGCCGTCAGTAGC
TTCGGCTGCAGTCTCCTCTTCGTCAAGCTCGTCCTTCGTCTCCACACCCG
GAGTCTCGCACCGTGTCCGAGGCCTCCGGAACAGGGCGCCGGTTGTGGCG
ACAGTCGCTCCGCCGACTACTGTCGCGGATGATGTCGTTGAGCTTCTCGT
CCCAGAGGCGCTGCGCCCGGCAAAGTTGGCTGAAGCCCAATCGTTGCCGT
CCATAACCGTAACTGACGTCGATATGCAATGGATTCATGTTCTTGCTGAA
GGATGGGCTACTCCTCTTAAGGGCTTCATGCGTGAGAGCGAGTATTTGCA
GAGTCAGCATTTCAACGCTCTTCGCATGCCAGATGGCTCTTTGACTAACA
TGAGCATCCCAATCGTGCTCGCTCTGAATGATGAACAGAAGGCACAGTTG
GAAAACCGTGCAGCCTTTGCGATTAAATCTCCAGAGGGTGAGGTTGTGGC
TATAATGAGGAACTTCGAAATTTACGTTCACAACAAGGAGGAGCGCTGCG
CACGTACCTTTGGTATCACTGATGAACGTCACCCGTACACCAAGTTTATT
TATGAGAGCGGGGATTACCTTGTCGGCGGCGACCTGGAGGTTGTCAAAGA
CATCACGTACAACGATGGCCTTGACGAATACAGACTTACACCCCGTCAGC
TGAGAGAAGAGTACAAGAAGAGAAACGCTGATGCCGTGTTTGTCTTCCAG
CTGCGCAATCCTATTCATAATGGCCATGCACTGCTTATGACATCTTGCCG
CGAGGAGCTCATCGCCCGCGGCTTTAAGAATCCAGTGTTGTTGGTGCATC
AAATTGGTGGCAAAGTGAAAGGTGATGATATTCCACTTTCTGTCCGTATA
CAACAGAACAAGCGTGTCCTTGCCGAAGGAGTTTTGGATCCGAACTCTAC
CCTGTTGGGAATTTTCCCAAGCCCCATGTTATACGCTGGTCCGACAGAGG
TTCAATGGCACGCCAAGGCGCGAATGAACGCCGGCTGCCAATATTATATC
GTCGGCCGTGATCCTGCGGGCATGAAACATCCGAATGGGGAAAGGGATAT
GTTTGATGCATGGCATGGAAAGAGTGTTCTTGGCATGGCCCCAGGACTTG
AAAACTTGGAAATCCTTCCCTTCCGTGTTGCAGCATATGATAAGACTATT
GGCAGAATGTCCTTCTTTGATCCCTCCAGAGCTGATGACTTCGTGTTTAT
ATCCGGGACGAAGATGCGCAAGTTTGCTTCCTCTGGTGAAACTCCGCCCG
ATGGTTTCATGGCTCCAACTGCATGGAAAGTTTTGGTTGACTACTATGCT
ACAAAGAAGCAATAG
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