Gcaud801.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud801.t1
Unique Name	Gcaud801.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_563_length_21865_cov_4.553550	contig	NODE_563_length_21865_cov_4.553550:118..1156 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	167542.P9515_04091
PFAMs	ELFV_dehydrog,ELFV_dehydrog_N
Max annot lvl	2\|Bacteria
KEGG rclass	RC00006,RC00036
KEGG ko	ko:K00263
KEGG Reaction	R01088,R01434,R02196
KEGG Pathway	ko00280,ko00290,ko01100,ko01110,ko01130,map00280,map00290,map01100,map01110,map01130
Evalue	2.01e-47
EggNOG OGs	COG0334@1\|root,COG0334@2\|Bacteria
EC	1.4.1.9
Description	glutamate dehydrogenase [NAD(P) ] activity
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud801	Gcaud801	Gracilaria caudata M_176_S67 male	gene	NODE_563_length_21865_cov_4.553550 118..1156 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud801.t1.CDS1	Gcaud801.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_563_length_21865_cov_4.553550 118..1156 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud801.t1.exon1	Gcaud801.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_563_length_21865_cov_4.553550 118..1156 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud801.t1.start1	Gcaud801.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_563_length_21865_cov_4.553550 1154..1156 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud801.t1	Gcaud801.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_563_length_21865_cov_4.553550 118..1156 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_563_length_21865_cov_4.553550:118..1156-
coding sequence from alignment at NODE_563_length_21865_cov_4.553550:118..1156-

mRNA sequence

>Gcaud801.t1 ID=Gcaud801.t1|Name=Gcaud801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MSNIFIRRFESVKLNVTIFVAYESLLHDVDPKLQTFYPANGGCRIKAYES
EEDASTECRHLAETMSLKHSTFSTGFTGGKIVVCCPNLQQIDRRILMVEI
SEALDQLEGRVLTGCDINTTMDDMKVLAQITSRKGRQNGYVLAGIDSRCD
PNEATAYGVAAAVQELVAFIEPREGVLTVLVLGAGKVGSHVAAILLRLPN
FVVMVADKIPGQAARAVPNAVDVSDEDWSAIDYDILVPCAGSRIIDTHVA
RRLKCRAICGSSNIPIVDEDAMGTLQQKRTLFVPENISSAGAVLQDSIEH
YASREFQQTHPSYIYAFISSLIAVKTRQFLQRKKDQPALDPYSVILX

spliced messenger RNA

>Gcaud801.t1 ID=Gcaud801.t1|Name=Gcaud801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:118..1156- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATATTTTCATCCGTCGATTTGAAAGCGTTAAGCTTAACGTCAC
CATTTTCGTGGCATATGAAAGTTTACTACATGATGTTGATCCTAAGCTAC
AAACTTTCTACCCAGCCAATGGCGGATGTCGAATCAAGGCATACGAATCT
GAAGAGGATGCTAGTACTGAATGCCGCCATCTTGCAGAGACGATGTCCCT
GAAGCACAGCACCTTCTCCACTGGGTTCACTGGAGGGAAGATTGTTGTTT
GCTGCCCTAATCTTCAACAAATCGACAGGAGAATTCTCATGGTTGAAATT
TCCGAAGCGCTTGATCAACTCGAAGGCCGTGTTCTGACCGGTTGTGATAT
CAATACTACAATGGACGATATGAAAGTCCTCGCCCAGATAACTTCGAGGA
AAGGTCGCCAGAACGGTTACGTTCTTGCAGGTATCGACTCCAGATGTGAT
CCAAACGAAGCCACTGCCTACGGAGTAGCTGCCGCCGTTCAAGAGCTCGT
CGCGTTTATTGAACCTCGTGAAGGGGTCCTTACCGTTCTCGTGCTAGGTG
CCGGAAAGGTAGGATCTCATGTCGCAGCTATTCTTCTTCGATTGCCAAAC
TTCGTTGTGATGGTTGCAGACAAGATACCAGGCCAAGCTGCTCGTGCAGT
ACCGAATGCCGTTGACGTTTCTGATGAGGACTGGAGTGCCATTGATTATG
ATATCCTTGTGCCCTGTGCTGGCTCCCGCATCATAGACACACATGTTGCC
CGCCGTTTGAAATGTCGCGCTATTTGTGGCTCTTCCAACATTCCCATCGT
TGATGAGGACGCAATGGGAACACTGCAGCAGAAGAGAACTCTATTTGTTC
CGGAGAATATTTCCTCAGCTGGTGCAGTTTTGCAGGATTCAATAGAGCAT
TATGCAAGTCGAGAGTTTCAGCAAACCCACCCCTCGTATATCTATGCGTT
CATATCCTCGCTAATTGCGGTCAAGACGCGCCAGTTTCTGCAGAGAAAGA
AGGATCAACCAGCCTTGGATCCATATTCTGTCATTCTTG

protein sequence of Gcaud801.t1

>Gcaud801.t1 ID=Gcaud801.t1|Name=Gcaud801.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MSNIFIRRFESVKLNVTIFVAYESLLHDVDPKLQTFYPANGGCRIKAYES
EEDASTECRHLAETMSLKHSTFSTGFTGGKIVVCCPNLQQIDRRILMVEI
SEALDQLEGRVLTGCDINTTMDDMKVLAQITSRKGRQNGYVLAGIDSRCD
PNEATAYGVAAAVQELVAFIEPREGVLTVLVLGAGKVGSHVAAILLRLPN
FVVMVADKIPGQAARAVPNAVDVSDEDWSAIDYDILVPCAGSRIIDTHVA
RRLKCRAICGSSNIPIVDEDAMGTLQQKRTLFVPENISSAGAVLQDSIEH
YASREFQQTHPSYIYAFISSLIAVKTRQFLQRKKDQPALDPYSVILX

mRNA from alignment at NODE_563_length_21865_cov_4.553550:118..1156-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud801.t1 ID=Gcaud801.t1|Name=Gcaud801.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:118..1156- (Gracilaria caudata M_176_S67 male)
ATGAGCAATATTTTCATCCGTCGATTTGAAAGCGTTAAGCTTAACGTCAC
CATTTTCGTGGCATATGAAAGTTTACTACATGATGTTGATCCTAAGCTAC
AAACTTTCTACCCAGCCAATGGCGGATGTCGAATCAAGGCATACGAATCT
GAAGAGGATGCTAGTACTGAATGCCGCCATCTTGCAGAGACGATGTCCCT
GAAGCACAGCACCTTCTCCACTGGGTTCACTGGAGGGAAGATTGTTGTTT
GCTGCCCTAATCTTCAACAAATCGACAGGAGAATTCTCATGGTTGAAATT
TCCGAAGCGCTTGATCAACTCGAAGGCCGTGTTCTGACCGGTTGTGATAT
CAATACTACAATGGACGATATGAAAGTCCTCGCCCAGATAACTTCGAGGA
AAGGTCGCCAGAACGGTTACGTTCTTGCAGGTATCGACTCCAGATGTGAT
CCAAACGAAGCCACTGCCTACGGAGTAGCTGCCGCCGTTCAAGAGCTCGT
CGCGTTTATTGAACCTCGTGAAGGGGTCCTTACCGTTCTCGTGCTAGGTG
CCGGAAAGGTAGGATCTCATGTCGCAGCTATTCTTCTTCGATTGCCAAAC
TTCGTTGTGATGGTTGCAGACAAGATACCAGGCCAAGCTGCTCGTGCAGT
ACCGAATGCCGTTGACGTTTCTGATGAGGACTGGAGTGCCATTGATTATG
ATATCCTTGTGCCCTGTGCTGGCTCCCGCATCATAGACACACATGTTGCC
CGCCGTTTGAAATGTCGCGCTATTTGTGGCTCTTCCAACATTCCCATCGT
TGATGAGGACGCAATGGGAACACTGCAGCAGAAGAGAACTCTATTTGTTC
CGGAGAATATTTCCTCAGCTGGTGCAGTTTTGCAGGATTCAATAGAGCAT
TATGCAAGTCGAGAGTTTCAGCAAACCCACCCCTCGTATATCTATGCGTT
CATATCCTCGCTAATTGCGGTCAAGACGCGCCAGTTTCTGCAGAGAAAGA
AGGATCAACCAGCCTTGGATCCATATTCTGTCATTCTTG

Coding sequence (CDS) from alignment at NODE_563_length_21865_cov_4.553550:118..1156-

>Gcaud801.t1 ID=Gcaud801.t1|Name=Gcaud801.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1039bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:118..1156- (Gracilaria caudata M_176_S67 male)
ATGAGCAATATTTTCATCCGTCGATTTGAAAGCGTTAAGCTTAACGTCAC
CATTTTCGTGGCATATGAAAGTTTACTACATGATGTTGATCCTAAGCTAC
AAACTTTCTACCCAGCCAATGGCGGATGTCGAATCAAGGCATACGAATCT
GAAGAGGATGCTAGTACTGAATGCCGCCATCTTGCAGAGACGATGTCCCT
GAAGCACAGCACCTTCTCCACTGGGTTCACTGGAGGGAAGATTGTTGTTT
GCTGCCCTAATCTTCAACAAATCGACAGGAGAATTCTCATGGTTGAAATT
TCCGAAGCGCTTGATCAACTCGAAGGCCGTGTTCTGACCGGTTGTGATAT
CAATACTACAATGGACGATATGAAAGTCCTCGCCCAGATAACTTCGAGGA
AAGGTCGCCAGAACGGTTACGTTCTTGCAGGTATCGACTCCAGATGTGAT
CCAAACGAAGCCACTGCCTACGGAGTAGCTGCCGCCGTTCAAGAGCTCGT
CGCGTTTATTGAACCTCGTGAAGGGGTCCTTACCGTTCTCGTGCTAGGTG
CCGGAAAGGTAGGATCTCATGTCGCAGCTATTCTTCTTCGATTGCCAAAC
TTCGTTGTGATGGTTGCAGACAAGATACCAGGCCAAGCTGCTCGTGCAGT
ACCGAATGCCGTTGACGTTTCTGATGAGGACTGGAGTGCCATTGATTATG
ATATCCTTGTGCCCTGTGCTGGCTCCCGCATCATAGACACACATGTTGCC
CGCCGTTTGAAATGTCGCGCTATTTGTGGCTCTTCCAACATTCCCATCGT
TGATGAGGACGCAATGGGAACACTGCAGCAGAAGAGAACTCTATTTGTTC
CGGAGAATATTTCCTCAGCTGGTGCAGTTTTGCAGGATTCAATAGAGCAT
TATGCAAGTCGAGAGTTTCAGCAAACCCACCCCTCGTATATCTATGCGTT
CATATCCTCGCTAATTGCGGTCAAGACGCGCCAGTTTCTGCAGAGAAAGA
AGGATCAACCAGCCTTGGATCCATATTCTGTCATTCTTG