Gcaud808.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud808.t1
Unique Name	Gcaud808.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_563_length_21865_cov_4.553550	contig	NODE_563_length_21865_cov_4.553550:16616..17770 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000014680
Max annot lvl	121069\|Pythiales
Evalue	3.37e-06
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,1ME2R@121069\|Pythiales
Description	function. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud808	Gcaud808	Gracilaria caudata M_176_S67 male	gene	NODE_563_length_21865_cov_4.553550 16616..17770 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud808.t1.stop1	Gcaud808.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_563_length_21865_cov_4.553550 16616..16618 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud808.t1.CDS1	Gcaud808.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_563_length_21865_cov_4.553550 16616..17770 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud808.t1.exon1	Gcaud808.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_563_length_21865_cov_4.553550 16616..17770 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud808.t1.start1	Gcaud808.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_563_length_21865_cov_4.553550 17768..17770 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud808.t1	Gcaud808.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_563_length_21865_cov_4.553550 16616..17770 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_563_length_21865_cov_4.553550:16616..17770-
coding sequence from alignment at NODE_563_length_21865_cov_4.553550:16616..17770-

mRNA sequence

>Gcaud808.t1 ID=Gcaud808.t1|Name=Gcaud808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp
MPTMSLAVVFVLAVFLAVLPAPASAHQSIAYPWAMSRMNACRVGKFKNCP
GPCPNDEIRADMSPNMPSITVSRNAFVTLNTKRNNHAGGFSRWSIVNVAD
MNDKAAHDNNAFLWTCADLNKQKCDSLNYKRDCSFDGRGQFYQHDIQIPP
VYPDGVYVLGWAWYGGTQGHGRGGNFGDYHDCMYINVQGGDLEQSHRPKF
ETGPSGTARDGKCAARTNRLGDCVREPCNGRRSGMKIPREFEGNKQPPLL
QQRRFVPYQIERPPATAPMVYGISIRKANDPNTVYASSSTGGFAQLRLTG
QAITITCDVEGDIEKVEFYKHGETLLGTDKSAPYSVEGEYRSGNGYRYKP
YRYKRENDIYMLSCATYGKDGSVQWARLEVWQTK*

spliced messenger RNA

>Gcaud808.t1 ID=Gcaud808.t1|Name=Gcaud808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:16616..17770- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCATGTCGCTCGCCGTCGTTTTCGTCCTGGCCGTCTTTCTCGC
CGTGCTGCCGGCGCCCGCGTCCGCGCATCAGTCCATCGCGTACCCGTGGG
CCATGTCGCGTATGAACGCCTGTCGCGTAGGAAAGTTCAAGAACTGTCCC
GGTCCGTGTCCCAACGACGAGATCCGAGCAGATATGTCTCCCAACATGCC
GTCCATCACCGTATCTCGCAACGCGTTTGTCACGCTCAACACCAAGCGCA
ACAACCACGCGGGCGGCTTTTCACGCTGGAGTATTGTGAACGTGGCCGAC
ATGAACGACAAGGCTGCACACGATAACAACGCGTTCTTGTGGACGTGTGC
CGATCTCAACAAGCAGAAGTGTGATAGTCTCAACTACAAACGCGATTGCA
GTTTTGATGGTCGTGGTCAGTTTTATCAGCATGACATTCAAATCCCACCG
GTGTATCCGGACGGTGTGTACGTGCTTGGCTGGGCTTGGTACGGCGGGAC
GCAGGGACACGGTCGTGGAGGAAATTTTGGCGACTATCATGATTGTATGT
ACATCAATGTGCAGGGCGGTGACCTAGAGCAATCTCATCGCCCCAAGTTC
GAGACAGGACCATCCGGCACAGCTCGTGATGGAAAGTGTGCAGCGCGCAC
CAACCGATTGGGCGATTGTGTGAGAGAGCCTTGTAATGGACGTCGTTCTG
GCATGAAGATTCCACGGGAGTTTGAGGGGAACAAACAGCCACCGCTTCTG
CAACAGCGACGGTTTGTGCCCTATCAGATCGAACGACCGCCGGCTACCGC
GCCTATGGTGTACGGTATCTCCATCCGCAAGGCCAATGATCCGAATACTG
TTTATGCTTCGTCTTCGACGGGTGGGTTTGCTCAGCTGCGGTTGACTGGA
CAGGCGATTACGATCACATGCGATGTGGAGGGGGATATTGAGAAGGTGGA
ATTCTACAAACATGGCGAGACGTTGTTGGGAACGGATAAAAGCGCGCCGT
ATAGCGTGGAGGGGGAGTATCGCTCGGGCAATGGATACCGGTACAAGCCG
TATCGCTACAAGCGGGAGAACGATATCTACATGCTCTCGTGCGCCACTTA
TGGTAAGGATGGTAGTGTGCAGTGGGCTCGGTTGGAGGTGTGGCAGACTA
AGTAG

protein sequence of Gcaud808.t1

>Gcaud808.t1 ID=Gcaud808.t1|Name=Gcaud808.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=385bp
MPTMSLAVVFVLAVFLAVLPAPASAHQSIAYPWAMSRMNACRVGKFKNCP
GPCPNDEIRADMSPNMPSITVSRNAFVTLNTKRNNHAGGFSRWSIVNVAD
MNDKAAHDNNAFLWTCADLNKQKCDSLNYKRDCSFDGRGQFYQHDIQIPP
VYPDGVYVLGWAWYGGTQGHGRGGNFGDYHDCMYINVQGGDLEQSHRPKF
ETGPSGTARDGKCAARTNRLGDCVREPCNGRRSGMKIPREFEGNKQPPLL
QQRRFVPYQIERPPATAPMVYGISIRKANDPNTVYASSSTGGFAQLRLTG
QAITITCDVEGDIEKVEFYKHGETLLGTDKSAPYSVEGEYRSGNGYRYKP
YRYKRENDIYMLSCATYGKDGSVQWARLEVWQTK*

mRNA from alignment at NODE_563_length_21865_cov_4.553550:16616..17770-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud808.t1 ID=Gcaud808.t1|Name=Gcaud808.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:16616..17770- (Gracilaria caudata M_176_S67 male)
ATGCCCACCATGTCGCTCGCCGTCGTTTTCGTCCTGGCCGTCTTTCTCGC
CGTGCTGCCGGCGCCCGCGTCCGCGCATCAGTCCATCGCGTACCCGTGGG
CCATGTCGCGTATGAACGCCTGTCGCGTAGGAAAGTTCAAGAACTGTCCC
GGTCCGTGTCCCAACGACGAGATCCGAGCAGATATGTCTCCCAACATGCC
GTCCATCACCGTATCTCGCAACGCGTTTGTCACGCTCAACACCAAGCGCA
ACAACCACGCGGGCGGCTTTTCACGCTGGAGTATTGTGAACGTGGCCGAC
ATGAACGACAAGGCTGCACACGATAACAACGCGTTCTTGTGGACGTGTGC
CGATCTCAACAAGCAGAAGTGTGATAGTCTCAACTACAAACGCGATTGCA
GTTTTGATGGTCGTGGTCAGTTTTATCAGCATGACATTCAAATCCCACCG
GTGTATCCGGACGGTGTGTACGTGCTTGGCTGGGCTTGGTACGGCGGGAC
GCAGGGACACGGTCGTGGAGGAAATTTTGGCGACTATCATGATTGTATGT
ACATCAATGTGCAGGGCGGTGACCTAGAGCAATCTCATCGCCCCAAGTTC
GAGACAGGACCATCCGGCACAGCTCGTGATGGAAAGTGTGCAGCGCGCAC
CAACCGATTGGGCGATTGTGTGAGAGAGCCTTGTAATGGACGTCGTTCTG
GCATGAAGATTCCACGGGAGTTTGAGGGGAACAAACAGCCACCGCTTCTG
CAACAGCGACGGTTTGTGCCCTATCAGATCGAACGACCGCCGGCTACCGC
GCCTATGGTGTACGGTATCTCCATCCGCAAGGCCAATGATCCGAATACTG
TTTATGCTTCGTCTTCGACGGGTGGGTTTGCTCAGCTGCGGTTGACTGGA
CAGGCGATTACGATCACATGCGATGTGGAGGGGGATATTGAGAAGGTGGA
ATTCTACAAACATGGCGAGACGTTGTTGGGAACGGATAAAAGCGCGCCGT
ATAGCGTGGAGGGGGAGTATCGCTCGGGCAATGGATACCGGTACAAGCCG
TATCGCTACAAGCGGGAGAACGATATCTACATGCTCTCGTGCGCCACTTA
TGGTAAGGATGGTAGTGTGCAGTGGGCTCGGTTGGAGGTGTGGCAGACTA
AGTAG

Coding sequence (CDS) from alignment at NODE_563_length_21865_cov_4.553550:16616..17770-

>Gcaud808.t1 ID=Gcaud808.t1|Name=Gcaud808.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1155bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:16616..17770- (Gracilaria caudata M_176_S67 male)
ATGCCCACCATGTCGCTCGCCGTCGTTTTCGTCCTGGCCGTCTTTCTCGC
CGTGCTGCCGGCGCCCGCGTCCGCGCATCAGTCCATCGCGTACCCGTGGG
CCATGTCGCGTATGAACGCCTGTCGCGTAGGAAAGTTCAAGAACTGTCCC
GGTCCGTGTCCCAACGACGAGATCCGAGCAGATATGTCTCCCAACATGCC
GTCCATCACCGTATCTCGCAACGCGTTTGTCACGCTCAACACCAAGCGCA
ACAACCACGCGGGCGGCTTTTCACGCTGGAGTATTGTGAACGTGGCCGAC
ATGAACGACAAGGCTGCACACGATAACAACGCGTTCTTGTGGACGTGTGC
CGATCTCAACAAGCAGAAGTGTGATAGTCTCAACTACAAACGCGATTGCA
GTTTTGATGGTCGTGGTCAGTTTTATCAGCATGACATTCAAATCCCACCG
GTGTATCCGGACGGTGTGTACGTGCTTGGCTGGGCTTGGTACGGCGGGAC
GCAGGGACACGGTCGTGGAGGAAATTTTGGCGACTATCATGATTGTATGT
ACATCAATGTGCAGGGCGGTGACCTAGAGCAATCTCATCGCCCCAAGTTC
GAGACAGGACCATCCGGCACAGCTCGTGATGGAAAGTGTGCAGCGCGCAC
CAACCGATTGGGCGATTGTGTGAGAGAGCCTTGTAATGGACGTCGTTCTG
GCATGAAGATTCCACGGGAGTTTGAGGGGAACAAACAGCCACCGCTTCTG
CAACAGCGACGGTTTGTGCCCTATCAGATCGAACGACCGCCGGCTACCGC
GCCTATGGTGTACGGTATCTCCATCCGCAAGGCCAATGATCCGAATACTG
TTTATGCTTCGTCTTCGACGGGTGGGTTTGCTCAGCTGCGGTTGACTGGA
CAGGCGATTACGATCACATGCGATGTGGAGGGGGATATTGAGAAGGTGGA
ATTCTACAAACATGGCGAGACGTTGTTGGGAACGGATAAAAGCGCGCCGT
ATAGCGTGGAGGGGGAGTATCGCTCGGGCAATGGATACCGGTACAAGCCG
TATCGCTACAAGCGGGAGAACGATATCTACATGCTCTCGTGCGCCACTTA
TGGTAAGGATGGTAGTGTGCAGTGGGCTCGGTTGGAGGTGTGGCAGACTA
AGTAG