Gcaud7614.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7614.t1
Unique Name	Gcaud7614.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1157_length_13190_cov_4.178105	contig	NODE_1157_length_13190_cov_4.178105:11212..12321 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ09978
PFAMs	NAD_binding_10
Max annot lvl	35493\|Streptophyta
GOs	GO:0001101,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0016020,GO:0031090,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0071944,GO:0097305,GO:0098588,GO:0098805,GO:1901700
Evalue	4.05e-72
EggNOG OGs	COG0702@1\|root,KOG1203@2759\|Eukaryota,37HNJ@33090\|Viridiplantae,3GFYD@35493\|Streptophyta
Description	NAD(P)-binding Rossmann-fold superfamily protein
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7614	Gcaud7614	Gracilaria caudata M_176_S67 male	gene	NODE_1157_length_13190_cov_4.178105 11212..12321 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1	Gcaud7614.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1157_length_13190_cov_4.178105 11212..12321 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1.start1	Gcaud7614.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1157_length_13190_cov_4.178105 11212..11214 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1.CDS1	Gcaud7614.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1157_length_13190_cov_4.178105 11212..11242 +
Gcaud7614.t1.CDS2	Gcaud7614.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1157_length_13190_cov_4.178105 11558..12321 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1.exon1	Gcaud7614.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1157_length_13190_cov_4.178105 11212..11242 +
Gcaud7614.t1.exon2	Gcaud7614.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1157_length_13190_cov_4.178105 11558..12321 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1.intron1	Gcaud7614.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1157_length_13190_cov_4.178105 11243..11557 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7614.t1.stop1	Gcaud7614.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1157_length_13190_cov_4.178105 12319..12321 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+
coding sequence from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+

mRNA sequence

>Gcaud7614.t1 ID=Gcaud7614.t1|Name=Gcaud7614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=265bp
LRIAPLEIRGSTMTLNVILTGAAGRTGRIVFEKLQSDPSNYSVTGLVRNL
EAARKLFPTTENLVEGDITKPETLEKPFAGKEALVILTSASPKLIPAPEG
APRQFKFDEDGMPEFVDWHGAKNQIDTAIRLGLKHVVFVGSMGSTDESHP
LNRVGNGNILRFKRKAELYLMESGIPYTIINPSGLSNEPEQQRELVVGRN
DELFTIFEQTQMSIPRADVARVVVSALLAPAAKNKAMDVAARPKGDGSIT
EDPVHLFNLVGSQI*

spliced messenger RNA

>Gcaud7614.t1 ID=Gcaud7614.t1|Name=Gcaud7614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=795bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCATCGCTCCACTCGAGATCCGCGGCTCAACAATGACTCTCAACGT
CATTCTCACCGGTGCAGCCGGTCGCACCGGCCGTATAGTTTTTGAAAAAC
TACAATCCGATCCTTCAAACTATTCTGTCACAGGATTAGTACGCAACCTT
GAAGCCGCCAGAAAACTATTTCCCACCACAGAAAACTTAGTTGAGGGAGA
CATAACAAAGCCGGAAACATTAGAAAAGCCCTTTGCTGGAAAGGAAGCGC
TCGTAATTCTCACCAGCGCTTCGCCAAAGCTCATTCCCGCGCCAGAAGGA
GCTCCAAGACAGTTCAAATTCGATGAGGACGGTATGCCAGAGTTTGTCGA
TTGGCACGGTGCAAAGAATCAAATAGACACCGCCATCCGACTAGGCTTGA
AACACGTCGTATTCGTCGGGTCTATGGGCAGCACTGATGAGAGCCATCCT
CTCAATCGCGTAGGAAACGGAAACATTCTCAGGTTTAAGAGAAAGGCAGA
GCTCTATCTTATGGAATCTGGTATTCCTTATACAATAATCAATCCCTCAG
GATTGTCCAATGAACCCGAGCAACAACGAGAACTTGTCGTCGGTAGAAAT
GATGAATTATTCACCATCTTCGAGCAAACTCAAATGTCAATTCCACGGGC
TGACGTTGCACGCGTCGTCGTCTCTGCTCTTCTTGCCCCGGCTGCAAAGA
ACAAAGCCATGGATGTTGCAGCGAGACCAAAGGGTGATGGCTCAATCACT
GAAGACCCAGTCCATCTATTCAACCTGGTCGGCTCGCAGATCTAA

protein sequence of Gcaud7614.t1

>Gcaud7614.t1 ID=Gcaud7614.t1|Name=Gcaud7614.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=265bp
LRIAPLEIRGSTMTLNVILTGAAGRTGRIVFEKLQSDPSNYSVTGLVRNL
EAARKLFPTTENLVEGDITKPETLEKPFAGKEALVILTSASPKLIPAPEG
APRQFKFDEDGMPEFVDWHGAKNQIDTAIRLGLKHVVFVGSMGSTDESHP
LNRVGNGNILRFKRKAELYLMESGIPYTIINPSGLSNEPEQQRELVVGRN
DELFTIFEQTQMSIPRADVARVVVSALLAPAAKNKAMDVAARPKGDGSIT
EDPVHLFNLVGSQI*

mRNA from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7614.t1 ID=Gcaud7614.t1|Name=Gcaud7614.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+ (Gracilaria caudata M_176_S67 male)
CTGCGCATCGCTCCACTCGAGATCCGCGGCTGTAAGTTAAGATCTGAGCA
CTTCTTCCACAACTCAATGTTTCTCTTTTGCGCACATGCGCCAACCCGGT
GAGTCAGCAGCCCTCCGCTGTGCATTCGAGATCAACCACTCCATTTGGCA
GACGCCACTTATTCCTACCCTTGTACCTTCGTGCTCACCTTCGATTCTTT
GCAATCGCGCCTCAAACACTCACCATCGTCGTGCGCTCTTGAGGGCATGA
AAATGGCCTTCATAACATCCATTCCGCTTCCAAAGACGACACTAACATCG
ACATCAAACTCAAATCGCTGCATCAATCTCCGTCGCTGTCGCCCAGCAAC
AATGACTCTCAACGTCATTCTCACCGGTGCAGCCGGTCGCACCGGCCGTA
TAGTTTTTGAAAAACTACAATCCGATCCTTCAAACTATTCTGTCACAGGA
TTAGTACGCAACCTTGAAGCCGCCAGAAAACTATTTCCCACCACAGAAAA
CTTAGTTGAGGGAGACATAACAAAGCCGGAAACATTAGAAAAGCCCTTTG
CTGGAAAGGAAGCGCTCGTAATTCTCACCAGCGCTTCGCCAAAGCTCATT
CCCGCGCCAGAAGGAGCTCCAAGACAGTTCAAATTCGATGAGGACGGTAT
GCCAGAGTTTGTCGATTGGCACGGTGCAAAGAATCAAATAGACACCGCCA
TCCGACTAGGCTTGAAACACGTCGTATTCGTCGGGTCTATGGGCAGCACT
GATGAGAGCCATCCTCTCAATCGCGTAGGAAACGGAAACATTCTCAGGTT
TAAGAGAAAGGCAGAGCTCTATCTTATGGAATCTGGTATTCCTTATACAA
TAATCAATCCCTCAGGATTGTCCAATGAACCCGAGCAACAACGAGAACTT
GTCGTCGGTAGAAATGATGAATTATTCACCATCTTCGAGCAAACTCAAAT
GTCAATTCCACGGGCTGACGTTGCACGCGTCGTCGTCTCTGCTCTTCTTG
CCCCGGCTGCAAAGAACAAAGCCATGGATGTTGCAGCGAGACCAAAGGGT
GATGGCTCAATCACTGAAGACCCAGTCCATCTATTCAACCTGGTCGGCTC
GCAGATCTAA

Coding sequence (CDS) from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+

>Gcaud7614.t1 ID=Gcaud7614.t1|Name=Gcaud7614.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=795bp|location=Sequence derived from alignment at NODE_1157_length_13190_cov_4.178105:11212..12321+ (Gracilaria caudata M_176_S67 male)
CTGCGCATCGCTCCACTCGAGATCCGCGGCTCAACAATGACTCTCAACGT
CATTCTCACCGGTGCAGCCGGTCGCACCGGCCGTATAGTTTTTGAAAAAC
TACAATCCGATCCTTCAAACTATTCTGTCACAGGATTAGTACGCAACCTT
GAAGCCGCCAGAAAACTATTTCCCACCACAGAAAACTTAGTTGAGGGAGA
CATAACAAAGCCGGAAACATTAGAAAAGCCCTTTGCTGGAAAGGAAGCGC
TCGTAATTCTCACCAGCGCTTCGCCAAAGCTCATTCCCGCGCCAGAAGGA
GCTCCAAGACAGTTCAAATTCGATGAGGACGGTATGCCAGAGTTTGTCGA
TTGGCACGGTGCAAAGAATCAAATAGACACCGCCATCCGACTAGGCTTGA
AACACGTCGTATTCGTCGGGTCTATGGGCAGCACTGATGAGAGCCATCCT
CTCAATCGCGTAGGAAACGGAAACATTCTCAGGTTTAAGAGAAAGGCAGA
GCTCTATCTTATGGAATCTGGTATTCCTTATACAATAATCAATCCCTCAG
GATTGTCCAATGAACCCGAGCAACAACGAGAACTTGTCGTCGGTAGAAAT
GATGAATTATTCACCATCTTCGAGCAAACTCAAATGTCAATTCCACGGGC
TGACGTTGCACGCGTCGTCGTCTCTGCTCTTCTTGCCCCGGCTGCAAAGA
ACAAAGCCATGGATGTTGCAGCGAGACCAAAGGGTGATGGCTCAATCACT
GAAGACCCAGTCCATCTATTCAACCTGGTCGGCTCGCAGATCTAA