Gcaud2663.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2663.t1
Unique NameGcaud2663.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_558_length_22134_cov_4.093136contigNODE_558_length_22134_cov_4.093136:9655..10152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ib00827.1.p
PFAMsFlavokinase,HAD_2
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K20884
KEGG ReactionR00548,R00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
GOsGO:0000287,GO:0003674,GO:0003824,GO:0003919,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0006915,GO:0006950,GO:0008150,GO:0008152,GO:0008219,GO:0008531,GO:0009611,GO:0009893,GO:0009987,GO:0012501,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0033860,GO:0033864,GO:0042060,GO:0042578,GO:0043085,GO:0043167,GO:0043169,GO:0044093,GO:0044237,GO:0044424,GO:0044464,GO:0046872,GO:0048518,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0065007,GO:0065009,GO:0070566,GO:0072593
Evalue3.39e-29
EggNOG OGsCOG0196@1|root,COG0637@1|root,KOG2914@2759|Eukaryota,KOG3110@2759|Eukaryota,37K0I@33090|Viridiplantae,3G8YV@35493|Streptophyta,3KS8B@4447|Liliopsida,3I31X@38820|Poales
EC2.7.1.26,3.1.3.102
DescriptionRiboflavin kinase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2663Gcaud2663Gracilaria caudata M_176_S67 malegeneNODE_558_length_22134_cov_4.093136 9655..10152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2663.t1.start1Gcaud2663.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_558_length_22134_cov_4.093136 9655..9657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2663.t1.CDS1Gcaud2663.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 9655..10152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2663.t1.exon1Gcaud2663.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 9655..10152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2663.t1.stop1Gcaud2663.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_558_length_22134_cov_4.093136 10150..10152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2663.t1Gcaud2663.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_558_length_22134_cov_4.093136 9655..10152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2663.t1 ID=Gcaud2663.t1|Name=Gcaud2663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=166bp
MCHSEPKFSSVQAVEWLPKPIAVSGLVQKGFGRGSRSLGTPTANLPGTLL
DTVTDASRNGVYLGFGRVPKFGDAVVKMVASIGYNITFGDVKQRVLEAHL
MSDIFETDFYGEEMRLCIVAFMRPELKFNSMQQLIDHIRNDISVANRALD
LPQAQPYRTHPLLLK*
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spliced messenger RNA

>Gcaud2663.t1 ID=Gcaud2663.t1|Name=Gcaud2663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:9655..10152+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCACTCCGAACCAAAATTCTCATCCGTTCAAGCCGTTGAATGGCT
CCCCAAGCCGATAGCCGTCAGCGGTCTAGTGCAAAAGGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCCACAGCAAATTTACCAGGCACTTTGTTG
GACACGGTTACCGACGCTTCCCGAAACGGGGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTCGGCGATGCTGTCGTCAAGATGGTTGCTAGTATCGGAT
ATAATATTACCTTTGGCGACGTCAAACAGCGTGTGTTGGAGGCACATCTC
ATGTCTGATATCTTTGAAACCGACTTCTATGGTGAGGAGATGCGACTATG
CATCGTTGCGTTCATGAGACCAGAGCTCAAGTTCAATTCGATGCAACAAC
TAATCGACCACATTCGCAACGATATAAGCGTTGCTAATCGTGCACTAGAC
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTGCTCAAATGA
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protein sequence of Gcaud2663.t1

>Gcaud2663.t1 ID=Gcaud2663.t1|Name=Gcaud2663.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=166bp
MCHSEPKFSSVQAVEWLPKPIAVSGLVQKGFGRGSRSLGTPTANLPGTLL
DTVTDASRNGVYLGFGRVPKFGDAVVKMVASIGYNITFGDVKQRVLEAHL
MSDIFETDFYGEEMRLCIVAFMRPELKFNSMQQLIDHIRNDISVANRALD
LPQAQPYRTHPLLLK*
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mRNA from alignment at NODE_558_length_22134_cov_4.093136:9655..10152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2663.t1 ID=Gcaud2663.t1|Name=Gcaud2663.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:9655..10152+ (Gracilaria caudata M_176_S67 male)
ATGTGCCACTCCGAACCAAAATTCTCATCCGTTCAAGCCGTTGAATGGCT
CCCCAAGCCGATAGCCGTCAGCGGTCTAGTGCAAAAGGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCCACAGCAAATTTACCAGGCACTTTGTTG
GACACGGTTACCGACGCTTCCCGAAACGGGGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTCGGCGATGCTGTCGTCAAGATGGTTGCTAGTATCGGAT
ATAATATTACCTTTGGCGACGTCAAACAGCGTGTGTTGGAGGCACATCTC
ATGTCTGATATCTTTGAAACCGACTTCTATGGTGAGGAGATGCGACTATG
CATCGTTGCGTTCATGAGACCAGAGCTCAAGTTCAATTCGATGCAACAAC
TAATCGACCACATTCGCAACGATATAAGCGTTGCTAATCGTGCACTAGAC
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTGCTCAAATGA
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Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:9655..10152+

>Gcaud2663.t1 ID=Gcaud2663.t1|Name=Gcaud2663.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=498bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:9655..10152+ (Gracilaria caudata M_176_S67 male)
ATGTGCCACTCCGAACCAAAATTCTCATCCGTTCAAGCCGTTGAATGGCT
CCCCAAGCCGATAGCCGTCAGCGGTCTAGTGCAAAAGGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCCACAGCAAATTTACCAGGCACTTTGTTG
GACACGGTTACCGACGCTTCCCGAAACGGGGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTCGGCGATGCTGTCGTCAAGATGGTTGCTAGTATCGGAT
ATAATATTACCTTTGGCGACGTCAAACAGCGTGTGTTGGAGGCACATCTC
ATGTCTGATATCTTTGAAACCGACTTCTATGGTGAGGAGATGCGACTATG
CATCGTTGCGTTCATGAGACCAGAGCTCAAGTTCAATTCGATGCAACAAC
TAATCGACCACATTCGCAACGATATAAGCGTTGCTAATCGTGCACTAGAC
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTGCTCAAATGA
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