Gcaud9211.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9211.t1
Unique NameGcaud9211.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length308
Homology
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A2V3J532_9FLOR (Cytoplasmic 60S subunit biogenesis factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J532_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 2.110e-96
Identity = 165/301 (54.82%), Postives = 202/301 (67.11%), Query Frame = 0
Query:    9 TDWMSSVNSVDVDGERDDAHDEDVVDVLHDDDDEAVEEALKQRLQEWREHDGFGGVFDDKWFADAHEALLHLQRGGLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAED--AELALPVGRLADGEGDGADEVALVVRDRVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLLQLSRRDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAVLNSGYRA 307
            ++WMSS++S        +  DE+VVDV+ D +DE VE  L++R+ EW  HDGFGGVFD+ WF  A EAL HLQ  G+FV F ERLRD EGL+ YLSQKVGVGFAC+ C+R F S+ AARKHMRDVGH GMT D++ WM E+GEFYDWS  A                             E   +E A+P+  L  GE DG DEV LVV D+V+GHRSL ++Y+QR RG +E AAVVA R ER++++LSRR + G LPLRV + A  R  R  LAVGR NYY+RKARF+QRM VLNSGYRA
Sbjct:  107 SEWMSSIHSAS------EIADEEVVDVM-DGEDEQVEHTLQERMAEWGTHDGFGGVFDNVWFESAEEALEHLQGCGVFVAFHERLRDVEGLMRYLSQKVGVGFACIECDRVFRSSQAARKHMRDVGHCGMTDDDEAWMVEFGEFYDWSGGAKREEDEEEGWEEVENEEELGDMAGVVVVREQKASESAMPILALEKGEEDGRDEVGLVVGDKVVGHRSLARYYRQRARGVEESAAVVAVRQERRMMELSRRAKDGTLPLRVRRLAALRESRFALAVGRGNYYSRKARFKQRMVVLNSGYRA 400          
BLAST of Gcaud9211.t1 vs. uniprot
Match: R7QSX5_CHOCR (C2H2-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSX5_CHOCR)

HSP 1 Score: 189 bits (480), Expect = 5.530e-54
Identity = 121/272 (44.49%), Postives = 160/272 (58.82%), Query Frame = 0
Query:   40 DDEAVEEALKQRLQEWREHDGFGGVFDDKWFADAHEALLHL-QRGGLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVG-RLADGEGDGADEVALVVRDRVLGHRSLRQFYKQRVRGG-DERAAVVAARGERQLLQLSRRDE-RGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAVLNSGYRA 307
            DD AV+  L++RL E R  +G   +FD+       E + ++ +R G FVP+ ERL+D +GL+ YL QKVGVG+ACV C+R FG+   ARKHMRD  H  MT DE+DWM EYGEFY++  +  DG                          E+    + VG  + + E   A+EV L V  +VLGHRSLR++Y+Q   G  DERAAVVA R  R+   L    + R  + ++  +   RR QR QL+VG +NYYTRKARF+Q MAV NSGYRA
Sbjct:  125 DDTAVQMELERRLAESRGLEGRECLFDESVHESVEENIKYMAKRYGFFVPYVERLKDVDGLMRYLGQKVGVGYACVECDRAFGAVADARKHMRDKAHCKMTADEEDWMAEYGEFYEFEGD--DG---------------------WEEVGEEEGAVVDVGGEVVEREEVNAEEVGLAVNGKVLGHRSLRRYYEQSAGGHVDERAAVVANRVMREYRLLGWEGKGRDAVAVKKMRRETRRDQRFQLSVGGQNYYTRKARFKQSMAVFNSGYRA 373          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A1X6PBD0_PORUM (C2H2-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBD0_PORUM)

HSP 1 Score: 119 bits (299), Expect = 6.520e-27
Identity = 96/289 (33.22%), Postives = 131/289 (45.33%), Query Frame = 0
Query:   64 VFDDKWFADAHEALLHLQRG-GLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFY----------DWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADGEGD-----------------GADEVALVV----------RDRVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLLQLSRRDERGQLPLRVSQAAERRAQRMQLA--------VGRRNYYTRKARFRQRMAVLNSGYR 306
            VFD K  A     L H+    G F+P+ E L D  GL+ YL +KVG+G+ACV C+R F S +A ++HM D  H+ M  D++ W++EY  F+          D +A+  DG                        T      A  V +LA G G                  G D+V  V+            RVLGHR L ++YKQR    + R A +A R  R  + L+  +  G     +S+ A  + QRMQL         VG+ NYYTRKA  R ++ VLNSGYR
Sbjct:  204 VFDGKACASVEANLAHMASAHGFFMPYIEHLVDAPGLLAYLGEKVGLGYACVACDRPFTSVEAVQRHMVDKAHKRMVDDDERWVDEYAPFFTADDDEEGEADAAADGEDGEWEEVEDDGEAAELLEAAGLSAKATTTSGVAA--VVQLAGGGGPADRQVVATADAADPPLRGGDDVGEVMDKITSSLVLPNGRVLGHRDLARYYKQRPAPAEARDAAIARRTMRSSV-LNNYNRIGWAGPAMSKVAA-KDQRMQLLRFKRDHLRVGQSNYYTRKAAIRPQLGVLNSGYR 488          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A5J4YQS6_PORPP (Cytoplasmic 60S subunit biogenesis factor REI1-like 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQS6_PORPP)

HSP 1 Score: 110 bits (276), Expect = 4.130e-24
Identity = 86/275 (31.27%), Postives = 132/275 (48.00%), Query Frame = 0
Query:   42 EAVEEALKQRLQEWREHDGFGGVFDDKWFADAHEALLHLQRG-GLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADGEGDGADE-----VALVVRD-RVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLLQ---LSRRDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAVLNSGYR 306
            EA EE L+ RL+E R       VFD          L ++ +    F+P+ E + D EG++ YL +KVGVG+AC+ C R FGS  AA+ HM    H     ++++WMEE+G++Y +     DG                         A  A +AL   +  D  G GA +     V LV+ + + +G+ + +++Y Q+ + G  R+ V  AR  + L +   L   ++     L V    ER  ++    +G + YYTRK+  R  M VLNSGYR
Sbjct:  147 EAAEEELETRLEEARPFSACECVFDGHTSDSTEHNLAYMAKAFSFFLPYAEFVLDLEGILSYLGEKVGVGYACICCSREFGSVYAAQAHMVAKSHCKFPPEDEEWMEEFGDWYAFEEEEQDG-----------------WEELSGDEAARAMIALEKQQAHDARGTGASDGYEEAVELVLPNGKRVGNMAFKRYYDQKPKPG--RSLVHQARLNKVLAEYRALGWHEKPRNEVLEVRAKFERIQKKKSQQLGVKTYYTRKSSLRPDMGVLNSGYR 402          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A7S0ZC57_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZC57_9RHOD)

HSP 1 Score: 97.4 bits (241), Expect = 3.890e-20
Identity = 78/237 (32.91%), Postives = 113/237 (47.68%), Query Frame = 0
Query:   64 VFDDKWFADAHEALLHLQRG-GLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADGEG---DGADEVALVVRD-RVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLLQ---LSRRDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKA 292
            VFD     DA +   ++ R  G FVP+ E + D  GL+ YL +KVGVG+ACV C+R F S  A + HM    H  MT ++D WMEE+ E+YD+     DG                           D  + +  G   D EG   +G + V LV+ + + +GHRSL+++Y Q  + G  R+   AAR +R + Q   L       Q+     +      +R  L +G + YYTRKA
Sbjct:   34 VFDMHLSTDAEQNAEYMARKFGFFVPYVEHVADLTGLLTYLGEKVGVGYACVCCDRGFSSVSAVQSHMIAKSHCKMTPEDDLWMEEFAEWYDFGEE--DGEEWEEVVGNEAEEYLQKL-------GADGTMMVLNGNHEDDEGIDVEGEEAVELVLANGKHVGHRSLKKYYDQSSKPG--RSPQEAARLQRIMAQYKSLGWYSGGEQISHETQRKMREIRKRKDLKLGVKTYYTRKA 259          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A7S2ZAQ4_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAQ4_9RHOD)

HSP 1 Score: 90.5 bits (223), Expect = 9.340e-17
Identity = 82/283 (28.98%), Postives = 112/283 (39.58%), Query Frame = 0
Query:   64 VFDDKWFADAHEALLHLQRGGLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSAN--ATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADG-----------------------------------EGDGADEVALVVRDRVLGHRSLRQFYKQRVRGGDERAAVVAAR--GERQLL-QLSRRDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAVLNSGYR 306
            + DD      H A LH    G F+P+ E L   E L+ YL +KVGVG+ACV C R F +  + +KHM D  H  M   E +W +EYGEFY W       DG                            A                                               E D A E+ L    RV GHRS+ ++YKQ  R  + R +V   R  GE +++ Q S   ++  LP R    ++RR   +   V +R YY  K +    +A++NSGYR
Sbjct:  158 ISDDVEANAKHMAKLH----GCFIPYVESLLSIESLLTYLGEKVGVGYACVFCSRSFSAVFSVQKHMIDKNHSRMIDSEQEWYDEYGEFYAWEDEDGMADGEEWEEVVGEEREMILSKHEAGVDREGNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITEDDTAVELVLNSGTRV-GHRSMLRYYKQAPRPRETRDSVQLTRIMGEYRMIGQGSVSSKQVALPSRKQLESKRR---LDNQVSKRQYYIGKLKANTNIAIMNSGYR 432          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A7S0BGD5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGD5_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 9.380e-17
Identity = 61/213 (28.64%), Postives = 95/213 (44.60%), Query Frame = 0
Query:   97 EGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADGEGDGADEVALVVRDRVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLLQLSR---RDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAVLNSGYR 306
            E L+ YL QKVGVG+ACV C R F +  + +KHM D  H  M   E +W +EYGEFY W                                 E    ++P    +    DG     ++    ++GHRS+ ++YKQ  R  + R +V+     ++   + +     ++  LP R    ++RR   +   V +R YY  K +    +A++NSGYR
Sbjct:    1 ESLLTYLGQKVGVGYACVFCSRSFSAVFSVQKHMSDKNHSRMIDSEQEWYDEYGEFYAWEDENVLNDGEEWEEVVGEERELILSRHEAGIDREAISASVPEDTTS---ADGTAVELVLNSGAMVGHRSMLRYYKQAPRPRETRDSVLLTSIMQEYRMIGQGYVSKKQAALPGRKQLESKRR---LDNHVSKRQYYIGKLKANTNIAIMNSGYR 207          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A7S2Z9I7_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9I7_9RHOD)

HSP 1 Score: 86.7 bits (213), Expect = 6.530e-16
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 0
Query:   64 VFDDKWFADAHEALLHLQRGGLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDW 155
            + DD      H A LH    G F+P+ E L   E L+ YL +KVGVG+ACV C R F +  + +KHM D  H  M   E +W +EYGEFY W
Sbjct:  158 ISDDVEANAKHMAKLH----GCFIPYVESLLSIESLLTYLGEKVGVGYACVFCSRSFSAVFSVQKHMIDKNHSRMIDSEQEWYDEYGEFYAW 245          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A1E4TYW2_PACTA (C2H2-type domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TYW2_PACTA)

HSP 1 Score: 79.0 bits (193), Expect = 8.150e-13
Identity = 60/213 (28.17%), Postives = 100/213 (46.95%), Query Frame = 0
Query:   48 LKQRLQEWREHDGFGGVFDDKWFADAHEALLHLQRG-GLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSANATDGAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELALPVGRLADGEGD------GADEVALVVRDRVLGHRSLRQFYKQRVRG----GDERAAVVAARGER 249
            LK R++  + H     +F +K + +  E++ H+ +  GL++P ++ L D+EGL+ YLS+K+G+G  C++C     S +A R HM    H  +  + +D   E  EFYD+S+   D                            D+E     G L+DGE           E+ L     V+GHRSL+++Y+Q +R      + +  V+AA   R
Sbjct:  170 LKNRVEIPKNH----CLFCNKKYPNLDESVNHMFKNHGLYIPEQKYLVDKEGLIQYLSEKIGLGNICIVCSYQGRSIEAVRAHMLSKSHCKIPYETEDEKLEISEFYDFSSTYQDSNSPSKSKIVIQDAKESTGEEDDEWEDVDSEDEESTGDLSDGEVPQELSYYNGYELHLP-SGAVVGHRSLQRYYRQNLRPDLVLSEGQGTVIAAETRR 377          
BLAST of Gcaud9211.t1 vs. uniprot
Match: A0A2R5G4J6_9STRA (Cytoplasmic 60S subunit biosis factor REI1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4J6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.670e-12
Identity = 83/232 (35.78%), Postives = 118/232 (50.86%), Query Frame = 0
Query:   42 EAVEEALKQRLQEWREHDGFGGVFDDKWFADAHEALLHLQRG-GLFVPFRERLRDEEGLVHYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYGEFYDWSA-NATD--------GAXXXXXXXXXXXXXXXXXXXXXXXTAEDAELAL-----PVGRLADGEGDGAD--EVALVVRD----RVLGHRSLRQFYKQRVRGGDERAAVVAARGERQLL 252
            E  EE L++++      D      D     D    L ++ +  G ++P  E + D +GL  Y SQKV  G  C+ C+R F S  AA +H+ D GH  +  + D+ +EEY +FYD++A N TD          XXXXX     XXXXXXXXXX     EDA+ +      P  R    + +  D  E+A++  D    RV+GHR  +  YKQR +  + R A++AA  ER LL
Sbjct:  122 EVDEEQLRRKV------DPCECFIDGHMSEDLEGTLAYMHKKYGFYIPDAEYVCDWQGLYKYCSQKVRAGKLCLYCDRPFKSGQAAIQHIVDKGHCKLPWESDEDLEEYEDFYDFTALNDTDEEGDEXXXXXXXXXXEMADAXXXXXXXXXXADTPREDAKKSASSSSKPKSRRTRIKHELLDNGEIAIINEDTGERRVMGHRDYKWIYKQRFQPEETRPALLAASKERLLL 347          
The following BLAST results are available for this feature:
BLAST of Gcaud9211.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J532_9FLOR2.110e-9654.82Cytoplasmic 60S subunit biogenesis factor n=1 Tax=... [more]
R7QSX5_CHOCR5.530e-5444.49C2H2-type domain-containing protein n=1 Tax=Chondr... [more]
A0A1X6PBD0_PORUM6.520e-2733.22C2H2-type domain-containing protein n=1 Tax=Porphy... [more]
A0A5J4YQS6_PORPP4.130e-2431.27Cytoplasmic 60S subunit biogenesis factor REI1-lik... [more]
A0A7S0ZC57_9RHOD3.890e-2032.91Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S2ZAQ4_9RHOD9.340e-1728.98Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BGD5_9RHOD9.380e-1728.64Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2Z9I7_9RHOD6.530e-1644.57Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A1E4TYW2_PACTA8.150e-1328.17C2H2-type domain-containing protein n=1 Tax=Pachys... [more]
A0A2R5G4J6_9STRA2.670e-1235.78Cytoplasmic 60S subunit biosis factor REI1 n=1 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR13182:SF8ZINC FINGER PROTEIN 622coord: 21..287
IPR041661ZN622/Rei1/Reh1, zinc finger C2H2-typePFAMPF12756zf-C2H2_2coord: 65..157
e-value: 1.2E-15
score: 57.6
IPR040025Zinc finger protein 622/Rei1/Reh1PANTHERPTHR13182ZINC FINGER PROTEIN 622coord: 21..287
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 113..135
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 111..140
score: 9.223856

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_551_length_22383_cov_4.305805contigNODE_551_length_22383_cov_4.305805:11676..12599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9211.t1Gcaud9211.t1Gracilaria caudata M_176_S67 malemRNANODE_551_length_22383_cov_4.305805 11676..12599 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9211.t1 ID=Gcaud9211.t1|Name=Gcaud9211.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=308bp
MNGAQLQDTDWMSSVNSVDVDGERDDAHDEDVVDVLHDDDDEAVEEALKQ
RLQEWREHDGFGGVFDDKWFADAHEALLHLQRGGLFVPFRERLRDEEGLV
HYLSQKVGVGFACVLCERCFGSADAARKHMRDVGHRGMTGDEDDWMEEYG
EFYDWSANATDGADGWEEVDAEEAEQLEQLQETEVETAEDAELALPVGRL
ADGEGDGADEVALVVRDRVLGHRSLRQFYKQRVRGGDERAAVVAARGERQ
LLQLSRRDERGQLPLRVSQAAERRAQRMQLAVGRRNYYTRKARFRQRMAV
LNSGYRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041661ZN622/Rei1/Reh1_Znf-C2H2
IPR040025Znf622/Rei1/Reh1
IPR013087Znf_C2H2_type