Gcaud334.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud334.t1
Unique NameGcaud334.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_543_length_22557_cov_4.226832contigNODE_543_length_22557_cov_4.226832:18055..18429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud334Gcaud334Gracilaria caudata M_176_S67 malegeneNODE_543_length_22557_cov_4.226832 18055..18429 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud334.t1.stop1Gcaud334.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_543_length_22557_cov_4.226832 18055..18057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud334.t1.CDS1Gcaud334.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_543_length_22557_cov_4.226832 18055..18429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud334.t1.exon1Gcaud334.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_543_length_22557_cov_4.226832 18055..18429 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud334.t1.start1Gcaud334.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_543_length_22557_cov_4.226832 18427..18429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud334.t1Gcaud334.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_543_length_22557_cov_4.226832 18055..18429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud334.t1 ID=Gcaud334.t1|Name=Gcaud334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=125bp
MKFTLSVLAAVLAVSLAAPVPKTAERPIFLPPFIDASTSIGGAGGDGGDA
SVVGAIVTGGVGGDGVSDSAFVANGGIIAGGDGVLSAVVGNGAVGTVVGS
GSITGSVTNTAVAGNGGAGGAAFS*
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spliced messenger RNA

>Gcaud334.t1 ID=Gcaud334.t1|Name=Gcaud334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_543_length_22557_cov_4.226832:18055..18429- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTACACTTTCCGTCCTCGCCGCCGTGCTTGCCGTGAGCCTCGC
CGCGCCCGTGCCGAAAACGGCGGAACGACCCATCTTCCTCCCGCCGTTTA
TCGACGCCAGCACCTCTATCGGTGGAGCCGGTGGCGACGGCGGTGACGCG
TCTGTTGTGGGCGCCATTGTAACGGGCGGAGTGGGCGGTGACGGCGTGTC
GGACTCGGCGTTTGTGGCAAACGGTGGAATTATCGCTGGCGGCGATGGTG
TGTTGTCGGCGGTCGTGGGCAATGGGGCGGTTGGCACCGTCGTGGGAAGC
GGCTCCATCACCGGCTCGGTGACCAACACGGCTGTGGCCGGAAACGGTGG
CGCCGGTGGAGCTGCGTTCTCCTAG
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protein sequence of Gcaud334.t1

>Gcaud334.t1 ID=Gcaud334.t1|Name=Gcaud334.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=125bp
MKFTLSVLAAVLAVSLAAPVPKTAERPIFLPPFIDASTSIGGAGGDGGDA
SVVGAIVTGGVGGDGVSDSAFVANGGIIAGGDGVLSAVVGNGAVGTVVGS
GSITGSVTNTAVAGNGGAGGAAFS*
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mRNA from alignment at NODE_543_length_22557_cov_4.226832:18055..18429-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud334.t1 ID=Gcaud334.t1|Name=Gcaud334.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp|location=Sequence derived from alignment at NODE_543_length_22557_cov_4.226832:18055..18429- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTACACTTTCCGTCCTCGCCGCCGTGCTTGCCGTGAGCCTCGC
CGCGCCCGTGCCGAAAACGGCGGAACGACCCATCTTCCTCCCGCCGTTTA
TCGACGCCAGCACCTCTATCGGTGGAGCCGGTGGCGACGGCGGTGACGCG
TCTGTTGTGGGCGCCATTGTAACGGGCGGAGTGGGCGGTGACGGCGTGTC
GGACTCGGCGTTTGTGGCAAACGGTGGAATTATCGCTGGCGGCGATGGTG
TGTTGTCGGCGGTCGTGGGCAATGGGGCGGTTGGCACCGTCGTGGGAAGC
GGCTCCATCACCGGCTCGGTGACCAACACGGCTGTGGCCGGAAACGGTGG
CGCCGGTGGAGCTGCGTTCTCCTAG
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Coding sequence (CDS) from alignment at NODE_543_length_22557_cov_4.226832:18055..18429-

>Gcaud334.t1 ID=Gcaud334.t1|Name=Gcaud334.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=375bp|location=Sequence derived from alignment at NODE_543_length_22557_cov_4.226832:18055..18429- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTACACTTTCCGTCCTCGCCGCCGTGCTTGCCGTGAGCCTCGC
CGCGCCCGTGCCGAAAACGGCGGAACGACCCATCTTCCTCCCGCCGTTTA
TCGACGCCAGCACCTCTATCGGTGGAGCCGGTGGCGACGGCGGTGACGCG
TCTGTTGTGGGCGCCATTGTAACGGGCGGAGTGGGCGGTGACGGCGTGTC
GGACTCGGCGTTTGTGGCAAACGGTGGAATTATCGCTGGCGGCGATGGTG
TGTTGTCGGCGGTCGTGGGCAATGGGGCGGTTGGCACCGTCGTGGGAAGC
GGCTCCATCACCGGCTCGGTGACCAACACGGCTGTGGCCGGAAACGGTGG
CGCCGGTGGAGCTGCGTTCTCCTAG
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