Gcaud9172.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9172.t1
Unique NameGcaud9172.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_526_length_22991_cov_4.374716contigNODE_526_length_22991_cov_4.374716:11964..12479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog945713.IALB_3056
Preferred nameyjdJ
PFAMsAcetyltransf_CG
Max annot lvl2|Bacteria
KEGG koko:K06975
Evalue1.1e-19
EggNOG OGsCOG2388@1|root,COG2388@2|Bacteria
DescriptionGCN5-related N-acetyl-transferase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9172Gcaud9172Gracilaria caudata M_176_S67 malegeneNODE_526_length_22991_cov_4.374716 11964..12479 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9172.t1.start1Gcaud9172.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_526_length_22991_cov_4.374716 11964..11966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9172.t1.CDS1Gcaud9172.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 11964..12479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9172.t1.exon1Gcaud9172.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 11964..12479 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9172.t1.stop1Gcaud9172.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_526_length_22991_cov_4.374716 12477..12479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9172.t1Gcaud9172.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_526_length_22991_cov_4.374716 11964..12479 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9172.t1 ID=Gcaud9172.t1|Name=Gcaud9172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=172bp
MLFFARVPIFQRASRGFAIGLPALRKPTKKIQNAGTVARVSPLRLFRSTT
KGLPLRISTQPESDHENPKSCTPTMSDEVLHEPEQNRFVIKYADVDEPAF
ISYVLSDGGTVYDINHTYTPPSLRGKGVAGKLVRHVIAFARGNGYKMIPT
CSYVAAYMERHPDDKDVLKVD*
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spliced messenger RNA

>Gcaud9172.t1 ID=Gcaud9172.t1|Name=Gcaud9172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:11964..12479+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTCTTCGCCAGAGTTCCGATCTTTCAACGGGCCTCTCGTGGATT
TGCCATCGGGTTGCCGGCGTTGAGAAAGCCGACCAAAAAAATTCAGAACG
CTGGCACGGTTGCGAGAGTAAGCCCACTGAGGTTATTTCGCTCGACTACG
AAGGGCCTTCCATTGCGAATATCTACTCAACCTGAGTCAGATCACGAGAA
CCCGAAAAGTTGTACCCCAACAATGAGCGATGAAGTCCTCCATGAACCGG
AGCAGAATCGCTTCGTAATCAAGTATGCCGATGTGGATGAACCAGCTTTC
ATATCGTACGTGCTGTCCGACGGAGGCACTGTGTACGACATTAACCATAC
ATACACGCCACCATCTCTACGTGGAAAGGGAGTTGCGGGAAAACTTGTAA
GACACGTTATCGCTTTTGCCAGAGGGAATGGGTATAAGATGATTCCGACT
TGTTCGTACGTTGCGGCGTACATGGAACGTCACCCAGACGACAAGGATGT
GCTCAAGGTGGATTGA
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protein sequence of Gcaud9172.t1

>Gcaud9172.t1 ID=Gcaud9172.t1|Name=Gcaud9172.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=172bp
MLFFARVPIFQRASRGFAIGLPALRKPTKKIQNAGTVARVSPLRLFRSTT
KGLPLRISTQPESDHENPKSCTPTMSDEVLHEPEQNRFVIKYADVDEPAF
ISYVLSDGGTVYDINHTYTPPSLRGKGVAGKLVRHVIAFARGNGYKMIPT
CSYVAAYMERHPDDKDVLKVD*
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mRNA from alignment at NODE_526_length_22991_cov_4.374716:11964..12479+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9172.t1 ID=Gcaud9172.t1|Name=Gcaud9172.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:11964..12479+ (Gracilaria caudata M_176_S67 male)
ATGTTGTTCTTCGCCAGAGTTCCGATCTTTCAACGGGCCTCTCGTGGATT
TGCCATCGGGTTGCCGGCGTTGAGAAAGCCGACCAAAAAAATTCAGAACG
CTGGCACGGTTGCGAGAGTAAGCCCACTGAGGTTATTTCGCTCGACTACG
AAGGGCCTTCCATTGCGAATATCTACTCAACCTGAGTCAGATCACGAGAA
CCCGAAAAGTTGTACCCCAACAATGAGCGATGAAGTCCTCCATGAACCGG
AGCAGAATCGCTTCGTAATCAAGTATGCCGATGTGGATGAACCAGCTTTC
ATATCGTACGTGCTGTCCGACGGAGGCACTGTGTACGACATTAACCATAC
ATACACGCCACCATCTCTACGTGGAAAGGGAGTTGCGGGAAAACTTGTAA
GACACGTTATCGCTTTTGCCAGAGGGAATGGGTATAAGATGATTCCGACT
TGTTCGTACGTTGCGGCGTACATGGAACGTCACCCAGACGACAAGGATGT
GCTCAAGGTGGATTGA
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Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:11964..12479+

>Gcaud9172.t1 ID=Gcaud9172.t1|Name=Gcaud9172.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=516bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:11964..12479+ (Gracilaria caudata M_176_S67 male)
ATGTTGTTCTTCGCCAGAGTTCCGATCTTTCAACGGGCCTCTCGTGGATT
TGCCATCGGGTTGCCGGCGTTGAGAAAGCCGACCAAAAAAATTCAGAACG
CTGGCACGGTTGCGAGAGTAAGCCCACTGAGGTTATTTCGCTCGACTACG
AAGGGCCTTCCATTGCGAATATCTACTCAACCTGAGTCAGATCACGAGAA
CCCGAAAAGTTGTACCCCAACAATGAGCGATGAAGTCCTCCATGAACCGG
AGCAGAATCGCTTCGTAATCAAGTATGCCGATGTGGATGAACCAGCTTTC
ATATCGTACGTGCTGTCCGACGGAGGCACTGTGTACGACATTAACCATAC
ATACACGCCACCATCTCTACGTGGAAAGGGAGTTGCGGGAAAACTTGTAA
GACACGTTATCGCTTTTGCCAGAGGGAATGGGTATAAGATGATTCCGACT
TGTTCGTACGTTGCGGCGTACATGGAACGTCACCCAGACGACAAGGATGT
GCTCAAGGTGGATTGA
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