Gcaud7576.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7576.t1
Unique Name	Gcaud7576.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	314

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1149_length_13302_cov_3.963742	contig	NODE_1149_length_13302_cov_3.963742:10068..11009 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMJ105CT
PFAMs	Tic22
Max annot lvl	2759\|Eukaryota
Evalue	1.43e-69
EggNOG OGs	2DZXZ@1\|root,2S7E9@2759\|Eukaryota
Description	Tic22-like family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7576	Gcaud7576	Gracilaria caudata M_176_S67 male	gene	NODE_1149_length_13302_cov_3.963742 10068..11009 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7576.t1.stop1	Gcaud7576.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1149_length_13302_cov_3.963742 10068..10070 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7576.t1.CDS1	Gcaud7576.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1149_length_13302_cov_3.963742 10068..11009 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7576.t1.exon1	Gcaud7576.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1149_length_13302_cov_3.963742 10068..11009 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7576.t1.start1	Gcaud7576.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1149_length_13302_cov_3.963742 11007..11009 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7576.t1	Gcaud7576.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1149_length_13302_cov_3.963742 10068..11009 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009-
coding sequence from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009-

mRNA sequence

>Gcaud7576.t1 ID=Gcaud7576.t1|Name=Gcaud7576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=314bp
MSAAPQPARQTADSSSSSSSSTTTTASTTSPFPWRSFAVSTTAAALATII
TPIVHNSLHSSSSSQPSATPTLVQPVFAAAKFSKKTVSEKLSQVPVFAVT
NASGQPYLAKMDGSGSQIGLIFFSHLDALNMLKDMKKNPGASDARVYIMG
LDKAYEMVKAKPTPSGIRGSGGEEMTMVFRFYPDSKQVKAAEGLQRKMRL
SSAVQGVPVFVAKGLTLRKGNENIVPLFLTKEDLDASWAKLRESNKDLPN
SAPVAVGNLLYIIQQMETDEQPELRKLGFFAPRASVEYVSKEQAGPTGQA
RLHQNPVNAQQNK*

spliced messenger RNA

>Gcaud7576.t1 ID=Gcaud7576.t1|Name=Gcaud7576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=942bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTGCGCCGCAACCTGCTCGTCAAACGGCTGATTCGTCATCGTC
GTCGTCGTCGTCGACGACGACGACCGCAAGCACGACGTCGCCGTTTCCAT
GGCGTTCGTTTGCTGTGTCCACCACCGCCGCCGCCTTAGCCACCATCATC
ACTCCCATCGTTCACAACTCGCTTCATTCATCGTCGTCGTCACAACCGTC
TGCAACACCCACTCTCGTTCAACCCGTGTTCGCCGCCGCAAAGTTCTCCA
AGAAAACCGTGTCAGAAAAGCTGTCGCAGGTGCCGGTGTTTGCAGTCACC
AACGCGTCGGGACAGCCGTATCTGGCCAAGATGGACGGCTCGGGCAGTCA
AATCGGGCTCATCTTCTTCTCGCATCTGGACGCGCTCAACATGTTGAAGG
ACATGAAGAAGAACCCGGGCGCCTCCGATGCGCGCGTGTACATCATGGGT
TTGGACAAGGCGTATGAGATGGTGAAGGCAAAACCCACACCGTCGGGTAT
TCGCGGCTCGGGCGGAGAGGAAATGACCATGGTGTTCCGCTTTTACCCGG
ACTCGAAGCAGGTGAAGGCTGCAGAGGGTCTGCAACGGAAGATGAGACTG
TCGTCGGCTGTACAAGGTGTGCCTGTGTTTGTGGCAAAGGGACTCACGCT
GAGAAAGGGCAATGAAAACATCGTTCCGTTGTTTTTAACAAAGGAGGATT
TGGATGCTTCTTGGGCAAAGCTCAGGGAGAGTAACAAGGATTTACCAAAT
AGTGCTCCGGTTGCTGTGGGCAATTTACTGTACATCATTCAACAGATGGA
GACTGATGAGCAACCGGAGTTGAGAAAGTTGGGTTTCTTTGCGCCGCGTG
CTTCTGTTGAGTACGTGTCAAAGGAACAGGCAGGGCCAACTGGTCAGGCA
AGGTTGCATCAGAATCCTGTTAATGCTCAACAAAACAAGTGA

protein sequence of Gcaud7576.t1

>Gcaud7576.t1 ID=Gcaud7576.t1|Name=Gcaud7576.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
MSAAPQPARQTADSSSSSSSSTTTTASTTSPFPWRSFAVSTTAAALATII
TPIVHNSLHSSSSSQPSATPTLVQPVFAAAKFSKKTVSEKLSQVPVFAVT
NASGQPYLAKMDGSGSQIGLIFFSHLDALNMLKDMKKNPGASDARVYIMG
LDKAYEMVKAKPTPSGIRGSGGEEMTMVFRFYPDSKQVKAAEGLQRKMRL
SSAVQGVPVFVAKGLTLRKGNENIVPLFLTKEDLDASWAKLRESNKDLPN
SAPVAVGNLLYIIQQMETDEQPELRKLGFFAPRASVEYVSKEQAGPTGQA
RLHQNPVNAQQNK*

mRNA from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7576.t1 ID=Gcaud7576.t1|Name=Gcaud7576.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=942bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009- (Gracilaria caudata M_176_S67 male)
ATGAGCGCTGCGCCGCAACCTGCTCGTCAAACGGCTGATTCGTCATCGTC
GTCGTCGTCGTCGACGACGACGACCGCAAGCACGACGTCGCCGTTTCCAT
GGCGTTCGTTTGCTGTGTCCACCACCGCCGCCGCCTTAGCCACCATCATC
ACTCCCATCGTTCACAACTCGCTTCATTCATCGTCGTCGTCACAACCGTC
TGCAACACCCACTCTCGTTCAACCCGTGTTCGCCGCCGCAAAGTTCTCCA
AGAAAACCGTGTCAGAAAAGCTGTCGCAGGTGCCGGTGTTTGCAGTCACC
AACGCGTCGGGACAGCCGTATCTGGCCAAGATGGACGGCTCGGGCAGTCA
AATCGGGCTCATCTTCTTCTCGCATCTGGACGCGCTCAACATGTTGAAGG
ACATGAAGAAGAACCCGGGCGCCTCCGATGCGCGCGTGTACATCATGGGT
TTGGACAAGGCGTATGAGATGGTGAAGGCAAAACCCACACCGTCGGGTAT
TCGCGGCTCGGGCGGAGAGGAAATGACCATGGTGTTCCGCTTTTACCCGG
ACTCGAAGCAGGTGAAGGCTGCAGAGGGTCTGCAACGGAAGATGAGACTG
TCGTCGGCTGTACAAGGTGTGCCTGTGTTTGTGGCAAAGGGACTCACGCT
GAGAAAGGGCAATGAAAACATCGTTCCGTTGTTTTTAACAAAGGAGGATT
TGGATGCTTCTTGGGCAAAGCTCAGGGAGAGTAACAAGGATTTACCAAAT
AGTGCTCCGGTTGCTGTGGGCAATTTACTGTACATCATTCAACAGATGGA
GACTGATGAGCAACCGGAGTTGAGAAAGTTGGGTTTCTTTGCGCCGCGTG
CTTCTGTTGAGTACGTGTCAAAGGAACAGGCAGGGCCAACTGGTCAGGCA
AGGTTGCATCAGAATCCTGTTAATGCTCAACAAAACAAGTGA

Coding sequence (CDS) from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009-

>Gcaud7576.t1 ID=Gcaud7576.t1|Name=Gcaud7576.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=942bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:10068..11009- (Gracilaria caudata M_176_S67 male)
ATGAGCGCTGCGCCGCAACCTGCTCGTCAAACGGCTGATTCGTCATCGTC
GTCGTCGTCGTCGACGACGACGACCGCAAGCACGACGTCGCCGTTTCCAT
GGCGTTCGTTTGCTGTGTCCACCACCGCCGCCGCCTTAGCCACCATCATC
ACTCCCATCGTTCACAACTCGCTTCATTCATCGTCGTCGTCACAACCGTC
TGCAACACCCACTCTCGTTCAACCCGTGTTCGCCGCCGCAAAGTTCTCCA
AGAAAACCGTGTCAGAAAAGCTGTCGCAGGTGCCGGTGTTTGCAGTCACC
AACGCGTCGGGACAGCCGTATCTGGCCAAGATGGACGGCTCGGGCAGTCA
AATCGGGCTCATCTTCTTCTCGCATCTGGACGCGCTCAACATGTTGAAGG
ACATGAAGAAGAACCCGGGCGCCTCCGATGCGCGCGTGTACATCATGGGT
TTGGACAAGGCGTATGAGATGGTGAAGGCAAAACCCACACCGTCGGGTAT
TCGCGGCTCGGGCGGAGAGGAAATGACCATGGTGTTCCGCTTTTACCCGG
ACTCGAAGCAGGTGAAGGCTGCAGAGGGTCTGCAACGGAAGATGAGACTG
TCGTCGGCTGTACAAGGTGTGCCTGTGTTTGTGGCAAAGGGACTCACGCT
GAGAAAGGGCAATGAAAACATCGTTCCGTTGTTTTTAACAAAGGAGGATT
TGGATGCTTCTTGGGCAAAGCTCAGGGAGAGTAACAAGGATTTACCAAAT
AGTGCTCCGGTTGCTGTGGGCAATTTACTGTACATCATTCAACAGATGGA
GACTGATGAGCAACCGGAGTTGAGAAAGTTGGGTTTCTTTGCGCCGCGTG
CTTCTGTTGAGTACGTGTCAAAGGAACAGGCAGGGCCAACTGGTCAGGCA
AGGTTGCATCAGAATCCTGTTAATGCTCAACAAAACAAGTGA