Gcaud7537.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7537.t1
Unique Name	Gcaud7537.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:46283..48421 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	588596.U9T1F4
PFAMs	WD40
Max annot lvl	4751\|Fungi
KEGG ko	ko:K03062
KEGG Pathway	ko03050,ko05165,ko05169,ko05203,map03050,map05165,map05169,map05203
KEGG Module	M00341
GOs	GO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006282,GO:0008150,GO:0019219,GO:0019222,GO:0031056,GO:0031323,GO:0031396,GO:0031399,GO:0031461,GO:0032268,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0035861,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051052,GO:0051128,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090734,GO:1902275,GO:1902494,GO:1903320,GO:1903775,GO:1990234,GO:2000779,GO:2001020,GO:2001166,GO:2001173
Evalue	8.49e-60
EggNOG OGs	KOG0772@1\|root,KOG0772@2759\|Eukaryota,38FE9@33154\|Opisthokonta,3NV0U@4751\|Fungi
Description	Wd repeat protein
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7537	Gcaud7537	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 46283..48421 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7537.t1.stop1	Gcaud7537.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 46283..46285 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7537.t1.CDS1	Gcaud7537.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 46283..48421 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7537.t1.exon1	Gcaud7537.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 46283..48421 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7537.t1.start1	Gcaud7537.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 48419..48421 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7537.t1	Gcaud7537.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 46283..48421 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:46283..48421-
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:46283..48421-

mRNA sequence

>Gcaud7537.t1 ID=Gcaud7537.t1|Name=Gcaud7537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=713bp
MSFFQTEDGSEDEDIKTKRFALFRSNRDTNHTLESFSEREKEELVSEPQL
LSEEQELEQLRKHSRYQSYAASKKIKRQSPQLRKRVVRHCASEVEEDKST
VQKVLLNAPFSMEAEKDMLHDTGRAYFGVEKTLKHGLQNQRKRRKTNPRI
DPKIIDDSSSGDSSESDEETPLGPALPHLPLLLHSQRYPDIISQEGIPLQ
NKVKLGSPHSSYVTGITIDNAGNRLVSVSLDSDAKMWDFNSMKSNMIPFR
TVNPLGDSPLRTIECSRSGSLLLCSGRANSAVVMDREGFSLTQTSQGDMY
IVDAARTKGHTASIAAAKWHPHQASNVSQIITTSLDGTIRVWDINRTSRK
PMTRIPVMTQLSVRRLRSRHGGRIIATALDWMHDSYSAALGCSDGTIKVL
DVRSSSNQPATQSAPATKQGEEMTSICCTPPSTQPYVLARCSDDCLRVYD
SRLFKEPVITFTNLPNTISETNVCFLGPSGDIFATGTSTTGKSGGSPGSI
RMFSMKELKEVMHIDSDRDTGSVIHVMWKESLNQLIVGTGSGDILVYYDS
VYSHRGVLNCQTKTANRKLHGIAAVGVGIAVPGSSFIPKGRKPANALRID
TETSSKQTGVSVMKPDSSSIPVRNVGKSSTLAQHLSKQEVSKEWSRDPRE
ALLQYADIASKDPRFTKIYEKTQPMPLLAEKTAEEEEEESKKAVYDRDRL
RKFRKHPNSDPH*

spliced messenger RNA

>Gcaud7537.t1 ID=Gcaud7537.t1|Name=Gcaud7537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:46283..48421- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTTTTTCAAACCGAAGATGGGTCAGAGGATGAGGATATCAAGAC
GAAACGTTTCGCCTTGTTCCGCTCCAACCGGGATACAAATCATACTTTGG
AATCGTTCTCTGAAAGAGAAAAGGAAGAATTGGTTAGCGAACCGCAACTG
CTCTCAGAAGAGCAGGAATTAGAGCAATTGAGAAAGCACAGCCGGTATCA
ATCATATGCCGCCTCAAAGAAGATTAAACGACAGTCGCCGCAATTGCGTA
AGCGGGTTGTACGACATTGTGCATCGGAAGTGGAAGAAGATAAGAGCACT
GTTCAAAAAGTACTGCTTAATGCGCCATTTTCAATGGAAGCAGAGAAGGA
TATGCTCCACGATACAGGAAGAGCATATTTTGGCGTCGAAAAGACTCTGA
AGCATGGGCTTCAAAATCAACGAAAACGAAGGAAGACTAATCCTCGAATT
GACCCCAAGATCATAGATGATTCATCATCAGGTGATAGTAGCGAGAGTGA
TGAAGAAACCCCACTTGGTCCAGCTCTGCCACATCTCCCTCTACTTCTTC
ATTCCCAGAGGTATCCCGACATTATATCTCAAGAAGGCATTCCGCTTCAA
AACAAAGTTAAACTAGGGTCACCTCACAGTTCGTATGTCACTGGAATCAC
GATAGATAATGCCGGAAATCGATTAGTATCGGTTTCTCTGGATTCTGATG
CGAAGATGTGGGACTTCAATTCCATGAAATCTAATATGATTCCATTCCGT
ACCGTTAATCCACTTGGAGATAGTCCTCTCCGAACCATTGAATGTTCGAG
GTCTGGGAGTCTGCTTCTGTGTTCGGGGAGAGCGAACTCAGCCGTTGTAA
TGGATAGAGAGGGTTTTAGTCTTACGCAGACATCGCAAGGAGATATGTAT
ATAGTCGATGCGGCGAGAACTAAAGGCCATACTGCTTCTATTGCAGCCGC
GAAGTGGCATCCACATCAAGCTTCTAATGTGTCCCAGATTATCACGACGT
CCTTGGACGGCACAATTCGAGTTTGGGATATCAATCGTACATCCCGGAAA
CCCATGACTCGAATTCCAGTGATGACCCAGTTGTCTGTCAGAAGACTAAG
AAGCCGCCATGGAGGTCGGATAATCGCAACTGCTTTGGACTGGATGCATG
ATAGCTACAGCGCAGCTCTCGGTTGTAGTGATGGGACAATAAAAGTTCTC
GATGTACGATCAAGCAGTAATCAACCTGCAACACAATCAGCACCAGCCAC
AAAACAAGGTGAGGAAATGACCAGTATATGTTGTACACCTCCTTCCACGC
AGCCTTACGTGTTGGCTCGTTGTTCGGATGATTGTCTGCGTGTTTATGAC
TCCAGACTCTTTAAGGAACCTGTAATCACCTTCACTAATCTTCCGAACAC
TATCTCGGAGACAAATGTTTGCTTTCTTGGTCCATCTGGAGATATTTTCG
CAACAGGAACTAGCACGACAGGGAAGTCCGGCGGTTCACCAGGTTCCATT
AGAATGTTTTCTATGAAGGAATTGAAAGAGGTGATGCACATTGACTCTGA
TAGGGACACCGGAAGCGTAATACATGTCATGTGGAAAGAGTCATTAAATC
AGTTAATCGTCGGAACAGGAAGCGGGGATATATTAGTGTACTATGACTCG
GTTTACAGCCATCGAGGTGTTCTCAATTGTCAGACCAAAACAGCAAATCG
AAAACTTCACGGGATTGCTGCAGTTGGTGTTGGTATAGCCGTTCCAGGCT
CATCGTTCATTCCCAAGGGAAGGAAACCAGCAAATGCTTTGAGAATTGAT
ACAGAAACTTCGTCAAAGCAGACTGGGGTGTCAGTGATGAAGCCAGACTC
GTCTTCAATTCCAGTGCGAAACGTGGGAAAGTCGTCTACACTTGCGCAAC
ATCTTTCGAAGCAGGAAGTATCCAAAGAATGGTCTCGAGACCCGAGAGAA
GCACTTCTTCAGTACGCTGATATCGCTAGCAAGGACCCTCGGTTCACGAA
GATATATGAAAAGACCCAACCTATGCCTTTGTTAGCGGAGAAAACAGCAG
AAGAGGAAGAAGAGGAATCGAAGAAAGCAGTTTACGACAGAGATAGGTTG
AGAAAATTCAGGAAGCATCCAAATTCGGACCCTCATTAG

protein sequence of Gcaud7537.t1

>Gcaud7537.t1 ID=Gcaud7537.t1|Name=Gcaud7537.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=713bp
MSFFQTEDGSEDEDIKTKRFALFRSNRDTNHTLESFSEREKEELVSEPQL
LSEEQELEQLRKHSRYQSYAASKKIKRQSPQLRKRVVRHCASEVEEDKST
VQKVLLNAPFSMEAEKDMLHDTGRAYFGVEKTLKHGLQNQRKRRKTNPRI
DPKIIDDSSSGDSSESDEETPLGPALPHLPLLLHSQRYPDIISQEGIPLQ
NKVKLGSPHSSYVTGITIDNAGNRLVSVSLDSDAKMWDFNSMKSNMIPFR
TVNPLGDSPLRTIECSRSGSLLLCSGRANSAVVMDREGFSLTQTSQGDMY
IVDAARTKGHTASIAAAKWHPHQASNVSQIITTSLDGTIRVWDINRTSRK
PMTRIPVMTQLSVRRLRSRHGGRIIATALDWMHDSYSAALGCSDGTIKVL
DVRSSSNQPATQSAPATKQGEEMTSICCTPPSTQPYVLARCSDDCLRVYD
SRLFKEPVITFTNLPNTISETNVCFLGPSGDIFATGTSTTGKSGGSPGSI
RMFSMKELKEVMHIDSDRDTGSVIHVMWKESLNQLIVGTGSGDILVYYDS
VYSHRGVLNCQTKTANRKLHGIAAVGVGIAVPGSSFIPKGRKPANALRID
TETSSKQTGVSVMKPDSSSIPVRNVGKSSTLAQHLSKQEVSKEWSRDPRE
ALLQYADIASKDPRFTKIYEKTQPMPLLAEKTAEEEEEESKKAVYDRDRL
RKFRKHPNSDPH*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:46283..48421-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7537.t1 ID=Gcaud7537.t1|Name=Gcaud7537.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2139bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:46283..48421- (Gracilaria caudata M_176_S67 male)
ATGTCATTTTTTCAAACCGAAGATGGGTCAGAGGATGAGGATATCAAGAC
GAAACGTTTCGCCTTGTTCCGCTCCAACCGGGATACAAATCATACTTTGG
AATCGTTCTCTGAAAGAGAAAAGGAAGAATTGGTTAGCGAACCGCAACTG
CTCTCAGAAGAGCAGGAATTAGAGCAATTGAGAAAGCACAGCCGGTATCA
ATCATATGCCGCCTCAAAGAAGATTAAACGACAGTCGCCGCAATTGCGTA
AGCGGGTTGTACGACATTGTGCATCGGAAGTGGAAGAAGATAAGAGCACT
GTTCAAAAAGTACTGCTTAATGCGCCATTTTCAATGGAAGCAGAGAAGGA
TATGCTCCACGATACAGGAAGAGCATATTTTGGCGTCGAAAAGACTCTGA
AGCATGGGCTTCAAAATCAACGAAAACGAAGGAAGACTAATCCTCGAATT
GACCCCAAGATCATAGATGATTCATCATCAGGTGATAGTAGCGAGAGTGA
TGAAGAAACCCCACTTGGTCCAGCTCTGCCACATCTCCCTCTACTTCTTC
ATTCCCAGAGGTATCCCGACATTATATCTCAAGAAGGCATTCCGCTTCAA
AACAAAGTTAAACTAGGGTCACCTCACAGTTCGTATGTCACTGGAATCAC
GATAGATAATGCCGGAAATCGATTAGTATCGGTTTCTCTGGATTCTGATG
CGAAGATGTGGGACTTCAATTCCATGAAATCTAATATGATTCCATTCCGT
ACCGTTAATCCACTTGGAGATAGTCCTCTCCGAACCATTGAATGTTCGAG
GTCTGGGAGTCTGCTTCTGTGTTCGGGGAGAGCGAACTCAGCCGTTGTAA
TGGATAGAGAGGGTTTTAGTCTTACGCAGACATCGCAAGGAGATATGTAT
ATAGTCGATGCGGCGAGAACTAAAGGCCATACTGCTTCTATTGCAGCCGC
GAAGTGGCATCCACATCAAGCTTCTAATGTGTCCCAGATTATCACGACGT
CCTTGGACGGCACAATTCGAGTTTGGGATATCAATCGTACATCCCGGAAA
CCCATGACTCGAATTCCAGTGATGACCCAGTTGTCTGTCAGAAGACTAAG
AAGCCGCCATGGAGGTCGGATAATCGCAACTGCTTTGGACTGGATGCATG
ATAGCTACAGCGCAGCTCTCGGTTGTAGTGATGGGACAATAAAAGTTCTC
GATGTACGATCAAGCAGTAATCAACCTGCAACACAATCAGCACCAGCCAC
AAAACAAGGTGAGGAAATGACCAGTATATGTTGTACACCTCCTTCCACGC
AGCCTTACGTGTTGGCTCGTTGTTCGGATGATTGTCTGCGTGTTTATGAC
TCCAGACTCTTTAAGGAACCTGTAATCACCTTCACTAATCTTCCGAACAC
TATCTCGGAGACAAATGTTTGCTTTCTTGGTCCATCTGGAGATATTTTCG
CAACAGGAACTAGCACGACAGGGAAGTCCGGCGGTTCACCAGGTTCCATT
AGAATGTTTTCTATGAAGGAATTGAAAGAGGTGATGCACATTGACTCTGA
TAGGGACACCGGAAGCGTAATACATGTCATGTGGAAAGAGTCATTAAATC
AGTTAATCGTCGGAACAGGAAGCGGGGATATATTAGTGTACTATGACTCG
GTTTACAGCCATCGAGGTGTTCTCAATTGTCAGACCAAAACAGCAAATCG
AAAACTTCACGGGATTGCTGCAGTTGGTGTTGGTATAGCCGTTCCAGGCT
CATCGTTCATTCCCAAGGGAAGGAAACCAGCAAATGCTTTGAGAATTGAT
ACAGAAACTTCGTCAAAGCAGACTGGGGTGTCAGTGATGAAGCCAGACTC
GTCTTCAATTCCAGTGCGAAACGTGGGAAAGTCGTCTACACTTGCGCAAC
ATCTTTCGAAGCAGGAAGTATCCAAAGAATGGTCTCGAGACCCGAGAGAA
GCACTTCTTCAGTACGCTGATATCGCTAGCAAGGACCCTCGGTTCACGAA
GATATATGAAAAGACCCAACCTATGCCTTTGTTAGCGGAGAAAACAGCAG
AAGAGGAAGAAGAGGAATCGAAGAAAGCAGTTTACGACAGAGATAGGTTG
AGAAAATTCAGGAAGCATCCAAATTCGGACCCTCATTAG

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:46283..48421-

>Gcaud7537.t1 ID=Gcaud7537.t1|Name=Gcaud7537.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2139bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:46283..48421- (Gracilaria caudata M_176_S67 male)
ATGTCATTTTTTCAAACCGAAGATGGGTCAGAGGATGAGGATATCAAGAC
GAAACGTTTCGCCTTGTTCCGCTCCAACCGGGATACAAATCATACTTTGG
AATCGTTCTCTGAAAGAGAAAAGGAAGAATTGGTTAGCGAACCGCAACTG
CTCTCAGAAGAGCAGGAATTAGAGCAATTGAGAAAGCACAGCCGGTATCA
ATCATATGCCGCCTCAAAGAAGATTAAACGACAGTCGCCGCAATTGCGTA
AGCGGGTTGTACGACATTGTGCATCGGAAGTGGAAGAAGATAAGAGCACT
GTTCAAAAAGTACTGCTTAATGCGCCATTTTCAATGGAAGCAGAGAAGGA
TATGCTCCACGATACAGGAAGAGCATATTTTGGCGTCGAAAAGACTCTGA
AGCATGGGCTTCAAAATCAACGAAAACGAAGGAAGACTAATCCTCGAATT
GACCCCAAGATCATAGATGATTCATCATCAGGTGATAGTAGCGAGAGTGA
TGAAGAAACCCCACTTGGTCCAGCTCTGCCACATCTCCCTCTACTTCTTC
ATTCCCAGAGGTATCCCGACATTATATCTCAAGAAGGCATTCCGCTTCAA
AACAAAGTTAAACTAGGGTCACCTCACAGTTCGTATGTCACTGGAATCAC
GATAGATAATGCCGGAAATCGATTAGTATCGGTTTCTCTGGATTCTGATG
CGAAGATGTGGGACTTCAATTCCATGAAATCTAATATGATTCCATTCCGT
ACCGTTAATCCACTTGGAGATAGTCCTCTCCGAACCATTGAATGTTCGAG
GTCTGGGAGTCTGCTTCTGTGTTCGGGGAGAGCGAACTCAGCCGTTGTAA
TGGATAGAGAGGGTTTTAGTCTTACGCAGACATCGCAAGGAGATATGTAT
ATAGTCGATGCGGCGAGAACTAAAGGCCATACTGCTTCTATTGCAGCCGC
GAAGTGGCATCCACATCAAGCTTCTAATGTGTCCCAGATTATCACGACGT
CCTTGGACGGCACAATTCGAGTTTGGGATATCAATCGTACATCCCGGAAA
CCCATGACTCGAATTCCAGTGATGACCCAGTTGTCTGTCAGAAGACTAAG
AAGCCGCCATGGAGGTCGGATAATCGCAACTGCTTTGGACTGGATGCATG
ATAGCTACAGCGCAGCTCTCGGTTGTAGTGATGGGACAATAAAAGTTCTC
GATGTACGATCAAGCAGTAATCAACCTGCAACACAATCAGCACCAGCCAC
AAAACAAGGTGAGGAAATGACCAGTATATGTTGTACACCTCCTTCCACGC
AGCCTTACGTGTTGGCTCGTTGTTCGGATGATTGTCTGCGTGTTTATGAC
TCCAGACTCTTTAAGGAACCTGTAATCACCTTCACTAATCTTCCGAACAC
TATCTCGGAGACAAATGTTTGCTTTCTTGGTCCATCTGGAGATATTTTCG
CAACAGGAACTAGCACGACAGGGAAGTCCGGCGGTTCACCAGGTTCCATT
AGAATGTTTTCTATGAAGGAATTGAAAGAGGTGATGCACATTGACTCTGA
TAGGGACACCGGAAGCGTAATACATGTCATGTGGAAAGAGTCATTAAATC
AGTTAATCGTCGGAACAGGAAGCGGGGATATATTAGTGTACTATGACTCG
GTTTACAGCCATCGAGGTGTTCTCAATTGTCAGACCAAAACAGCAAATCG
AAAACTTCACGGGATTGCTGCAGTTGGTGTTGGTATAGCCGTTCCAGGCT
CATCGTTCATTCCCAAGGGAAGGAAACCAGCAAATGCTTTGAGAATTGAT
ACAGAAACTTCGTCAAAGCAGACTGGGGTGTCAGTGATGAAGCCAGACTC
GTCTTCAATTCCAGTGCGAAACGTGGGAAAGTCGTCTACACTTGCGCAAC
ATCTTTCGAAGCAGGAAGTATCCAAAGAATGGTCTCGAGACCCGAGAGAA
GCACTTCTTCAGTACGCTGATATCGCTAGCAAGGACCCTCGGTTCACGAA
GATATATGAAAAGACCCAACCTATGCCTTTGTTAGCGGAGAAAACAGCAG
AAGAGGAAGAAGAGGAATCGAAGAAAGCAGTTTACGACAGAGATAGGTTG
AGAAAATTCAGGAAGCATCCAAATTCGGACCCTCATTAG