Gcaud7528.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7528.t1
Unique Name	Gcaud7528.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	177

Homology

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A2V3IXT2_9FLOR (Ferredoxin-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXT2_9FLOR)

HSP 1 Score: 249 bits (636), Expect = 3.910e-82
Identity = 123/181 (67.96%), Postives = 144/181 (79.56%), Query Frame = 0

Query:    1 MGLAFLSPISPHHAGKPVLQVSKCVQQPPPSP-----PSVTSTKPPYRRRDGSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            M  AF++P     A +   +VSKCV+    SP     PS T  K    +RDGS PSRPGAKTYQV +EDP KG+VH Y+VPEDRY+WHS++DQGAD+P+SCRNGCCTTCAVK+ +G+VQQ++ALGLLKDMRAKGYALLCVSY  SD+ CVLQ +DEVYVKQFGSSFE GGVEWGGFVPEDD
Sbjct:    1 MSSAFVAPFLKGTALQKRKEVSKCVKASTSSPLTPLNPSETRIK----KRDGSFPSRPGAKTYQVKIEDPRKGIVHTYTVPEDRYIWHSITDQGADLPASCRNGCCTTCAVKMSTGEVQQEEALGLLKDMRAKGYALLCVSYARSDIDCVLQGKDEVYVKQFGSSFESGGVEWGGFVPEDD 177

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BLAST of Gcaud7528.t1 vs. uniprot
Match: R7QMK8_CHOCR (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMK8_CHOCR)

HSP 1 Score: 218 bits (554), Expect = 9.620e-69
Identity = 105/146 (71.92%), Postives = 116/146 (79.45%), Query Frame = 0

Query:   31 SPPSVTSTKPPYRRRDGSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            +PP  T  +   ++RDGSLP  P AKT+ VTV DP    V +Y VPEDRYVWH MSDQ ADIPSSC NGCCTTCAVKI SG+V Q +ALGLLK+MR + YALLCVSYP SD+ CVLQDEDEVYVKQFGSSFE GGVEWGG VPEDD
Sbjct:   99 TPPIATPIQ--MKKRDGSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIPSSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVYVKQFGSSFESGGVEWGGVVPEDD 242

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A7S1TD70_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD70_9RHOD)

HSP 1 Score: 201 bits (512), Expect = 1.810e-63
Identity = 89/133 (66.92%), Postives = 111/133 (83.46%), Query Frame = 0

Query:   44 RRDGSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            RRDG+LPS+PGAK + VTV DP K VV++  VPEDRY+W  M +QG DIP+SCRNGCCTTCA ++ SG+V QD+ALGLLK+++A+GYALLCVSYP SD+   LQD DEVY +QFG +FE GGVEWGGF+PE++
Sbjct:   31 RRDGALPSKPGAKRFHVTVRDPAKNVVYETQVPEDRYIWWEMEEQGFDIPASCRNGCCTTCAGRVTSGEVSQDEALGLLKEIKAQGYALLCVSYPRSDVEVTLQDIDEVYCRQFGDTFEQGGVEWGGFLPEEE 163

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A7S1ER34_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER34_9RHOD)

HSP 1 Score: 187 bits (474), Expect = 1.310e-57
Identity = 84/134 (62.69%), Postives = 104/134 (77.61%), Query Frame = 0

Query:   43 RRRDGSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            +RR G+LP    AK Y+VT++DP K V H   VP DRY+WHSM +QG DIP+SCR+GCCTTCAV+I+ G V Q++ALGL+K +R +GYALLCVSYP SD+   LQD DEVYVKQFG+SFE GG EWGG   ++D
Sbjct:   36 QRRHGNLPGDVNAKKYKVTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPASCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFESGGKEWGGVFLDED 169

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A5J4YT31_PORPP (Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT31_PORPP)

HSP 1 Score: 182 bits (461), Expect = 3.070e-55
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0

Query:   55 AKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            A+ Y VTV DP K   +   VPEDRY+WH+M +QG DIP+SCR+GCCTTCAV+I+SG VQQDQALGLL++MR +GYALLCVSYP SD+   LQDEDEVY+KQFG +FE GG EWGG   ++D
Sbjct:   77 ARRYNVTVHDPKKNATYSVQVPEDRYIWHAMEEQGYDIPASCRHGCCTTCAVRIESGAVQQDQALGLLREMRDQGYALLCVSYPKSDIVATLQDEDEVYIKQFGGTFEQGGKEWGGVFLDED 198

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A1X6NNM8_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNM8_PORUM)

HSP 1 Score: 173 bits (439), Expect = 1.650e-51
Identity = 86/140 (61.43%), Postives = 101/140 (72.14%), Query Frame = 0

Query:   32 PPSVTSTKPPYRRRDGSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSD-QGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGG 170
            P  VT   P     DGSLP  P A T+ VTV D    VV   +VPEDRY+WH+M +  G  +PSSCR+GCCTTCAV++ SG+V Q +ALGLL+ MR  GYALLCVS P SD+ CVLQ+EDEVYVKQFG +FE GGVEWGG
Sbjct:   39 PTRVTRRPPVVAALDGSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLPSSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVYVKQFGDTFEQGGVEWGG 178

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A4D9CSH6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 5.470e-50
Identity = 79/135 (58.52%), Postives = 97/135 (71.85%), Query Frame = 0

Query:   47 GSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPS-----SCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            G  P +P AK Y+VTV DP     +   VPEDRY++ +  D G D+P       CRNGCCTTCAVK+K G+V+ + ALGLL+DM+ KGYAL C S P SD+ C LQDEDEVYV+Q+G +FE GGVEWGGF+PEDD
Sbjct:   83 GIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYVRQWGETFESGGVEWGGFLPEDD 217

[Close]

BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A7S1ER81_9RHOD (Ferredoxin n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER81_9RHOD)

HSP 1 Score: 166 bits (420), Expect = 5.480e-50
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 0

Query:   55 AKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGG 165
            AK Y+VT++DP K V H   VP DRY+WHSM +QG DIP+SCR+GCCTTCAV+I+ G V Q++ALGL+K +R +GYALLCVSYP SD+   LQD DEVYVKQFG+SFE GG
Sbjct:    4 AKKYKVTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPASCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFEAGG 114

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BLAST of Gcaud7528.t1 vs. uniprot
Match: M2VXX0_GALSU (Ferredoxin n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXX0_GALSU)

HSP 1 Score: 164 bits (414), Expect = 2.730e-48
Identity = 74/124 (59.68%), Postives = 94/124 (75.81%), Query Frame = 0

Query:   53 PGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVPEDD 176
            P A+ Y+VTV +   G  +   VP DRY+W S  +QG ++PSSC NGCCTTCA ++ SG+++Q  ALGLLK+M+ K YALLCVSYP SD+  VLQ+EDEVY +QFG SFE GGVE+GG +PEDD
Sbjct:   62 PNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELPSSCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVYCRQFGDSFESGGVEYGGIIPEDD 185

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BLAST of Gcaud7528.t1 vs. uniprot
Match: A0A7S0BU01_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BU01_9RHOD)

HSP 1 Score: 161 bits (408), Expect = 1.960e-47
Identity = 77/132 (58.33%), Postives = 99/132 (75.00%), Query Frame = 0

Query:   47 GSLPSRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGCCTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDEDEVYVKQFGSSFEGGGVEWGGFVP--EDD 176
            G+LP  P AKT++V V D   G V+   VPEDRY+ + +++QG ++P+ CRNGCCTTCAVK++SG+V Q +ALGLLK+M+ +GYAL+CVSYP SD+    QDEDEVYVKQFG SFE GGV  G  +   EDD
Sbjct:   50 GALPGDPNAKTWKVKVLDSKTGDVYTADVPEDRYILYYLAEQGMEMPAQCRNGCCTTCAVKLQSGEVHQPEALGLLKEMKDEGYALMCVSYPRSDIEATTQDEDEVYVKQFGESFESGGVVPGAVLDAIEDD 181

The following BLAST results are available for this feature:

BLAST of Gcaud7528.t1 vs. uniprot

BLAST of Gcaud7528.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IXT2_9FLOR	3.910e-82	67.96	Ferredoxin-2 n=1 Tax=Gracilariopsis chorda TaxID=4...	[more]
R7QMK8_CHOCR	9.620e-69	71.92	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S1TD70_9RHOD	1.810e-63	66.92	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
A0A7S1ER34_9RHOD	1.310e-57	62.69	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A5J4YT31_PORPP	3.070e-55	66.39	Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=...	[more]
A0A1X6NNM8_PORUM	1.650e-51	61.43	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A4D9CSH6_9STRA	5.470e-50	58.52	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A7S1ER81_9RHOD	5.480e-50	66.67	Ferredoxin n=1 Tax=Timspurckia oligopyrenoides Tax...	[more]
M2VXX0_GALSU	2.730e-48	59.68	Ferredoxin n=1 Tax=Galdieria sulphuraria TaxID=130...	[more]
A0A7S0BU01_9RHOD	1.960e-47	58.33	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 55..160 e-value: 1.0E-24 score: 88.1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 71..138 e-value: 5.7E-13 score: 48.6
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 58..152 score: 9.808139
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 60..142 e-value: 1.12284E-17 score: 71.6572
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..57
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 50..158
None	No IPR available	PANTHER	PTHR43112:SF10	FERREDOXIN C 2, CHLOROPLASTIC	coord: 50..158
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 53..157

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:28032..28674 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7528.t1	Gcaud7528.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_51_length_65224_cov_4.623524 28032..28674 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MGLAFLSPISPHHAGKPVLQVSKCVQQPPPSPPSVTSTKPPYRRRDGSLP
SRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGC
CTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDED
EVYVKQFGSSFEGGGVEWGGFVPEDD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type
IPR036010	2Fe-2S_ferredoxin-like_sf