Gcaud7526.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7526.t1
Unique Name	Gcaud7526.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:22904..24913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	65071.PYU1_T012764
PFAMs	Pkinase
Max annot lvl	121069\|Pythiales
Evalue	1.08e-52
EggNOG OGs	KOG0581@1\|root,KOG0581@2759\|Eukaryota,1MGXV@121069\|Pythiales
Description	Ser thr kinase. Source PGD
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7526	Gcaud7526	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 22904..24913 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7526.t1.stop1	Gcaud7526.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 22904..22906 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7526.t1.CDS1	Gcaud7526.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 22904..24913 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7526.t1.exon1	Gcaud7526.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 22904..24913 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7526.t1.start1	Gcaud7526.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 24911..24913 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7526.t1	Gcaud7526.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 22904..24913 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:22904..24913-
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:22904..24913-

mRNA sequence

>Gcaud7526.t1 ID=Gcaud7526.t1|Name=Gcaud7526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp
MGLFSRKASSRNIGQSDRGNHGPLSPRKNAPRRISKLNDLFSDGKPSTEM
PGTPVTDATVFHEAVSAPTIALDDFVQGTEASSEVEASVLMNLSVDGDRN
CAYSDRRDRNRPTAAASNQDRTMQITDLARRNSIKRSVSRKIARSESRRQ
LLNIKDTSLSEDRATSTAMSRSKSALVSQDKAVNRSLDRSSSIKVSMNDR
KLPVPMSRSSSFSARVRALNSKDQSSSDVKVDDTLNAMGVMAVTDEVDEE
LEISHSSLRNFSKLEDVEQKEGSDLKKSVTDARTPSCTAEQHSNTESIKS
AKVRKRPPPLMAKEEVKSVTDSTTDWPSGGYFGSDGGFVTGGFRITAEGM
LDKPLTVTRQDSDDDDDGGVPQSHRMIVIAKGLKEFRTGPTIGAGAAGRV
YIAEHIPSKTPMAMKVVNVYDKHRRNQLLKELETLSTHISRYLVRFYGAF
YDGSGAVHIALEYMDHGCLATFVQRVGPIPERVVQMIAHDCVKGLRFLHR
HHVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYM
SPERLNGSKYTYASDVWALGVSIMECLLGKYPFDRPQNYFDYIEATMATN
VLSGFKRECAKFSSEVKDFVERCTYTDPKKRATVAELMEHPWLNGTTRDT
ELFGSWLDECRIISMRPTC*

spliced messenger RNA

>Gcaud7526.t1 ID=Gcaud7526.t1|Name=Gcaud7526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:22904..24913- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTGTTTAGTCGTAAGGCTTCTTCAAGAAATATTGGGCAGTCGGA
TAGAGGTAATCACGGCCCACTATCTCCACGAAAGAATGCGCCGAGGCGCA
TTTCAAAACTCAATGATTTGTTTTCTGACGGGAAACCGAGCACTGAGATG
CCTGGAACGCCAGTGACTGATGCTACTGTTTTTCACGAAGCCGTCTCAGC
ACCGACTATTGCATTGGATGACTTTGTTCAAGGTACAGAAGCGTCATCAG
AAGTGGAGGCTTCTGTACTCATGAATCTAAGTGTTGATGGAGACAGGAAT
TGTGCGTACTCTGATCGAAGGGATAGAAATCGTCCAACAGCAGCTGCTTC
AAACCAAGACCGGACGATGCAAATAACAGATCTTGCTAGGCGAAACTCTA
TCAAACGTTCTGTGTCGAGGAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTCTTGAACATAAAGGATACCAGTTTAAGCGAGGATCGCGCTACCAGCAC
TGCGATGAGTCGTTCGAAATCTGCTTTAGTGTCCCAGGATAAAGCTGTGA
ACCGCAGCCTGGACCGTTCGAGTTCTATCAAGGTCAGTATGAATGACAGG
AAACTTCCTGTTCCAATGTCTAGATCCAGTTCATTCTCTGCACGTGTACG
AGCCCTGAACTCAAAAGACCAATCCTCATCAGATGTGAAGGTGGATGACA
CTTTGAACGCAATGGGTGTTATGGCGGTAACGGATGAAGTTGATGAAGAA
CTTGAAATCAGTCATTCCAGTCTACGAAACTTTTCAAAATTGGAAGATGT
AGAACAGAAGGAGGGTTCGGATTTGAAGAAAAGCGTCACCGATGCTAGGA
CCCCATCTTGTACCGCTGAACAACACTCTAACACTGAAAGCATTAAATCA
GCGAAAGTCAGGAAGCGGCCTCCCCCTCTCATGGCAAAAGAAGAGGTTAA
ATCAGTGACAGATTCTACAACGGACTGGCCAAGCGGAGGATACTTTGGTA
GTGATGGAGGATTCGTCACTGGCGGTTTTCGTATTACTGCAGAGGGAATG
CTTGACAAACCACTTACGGTTACACGTCAGGATTCAGATGACGACGATGA
TGGGGGAGTTCCTCAATCACATCGAATGATTGTGATAGCCAAAGGTTTGA
AAGAATTTCGCACAGGCCCTACCATTGGCGCAGGAGCGGCAGGTAGGGTA
TATATTGCAGAGCACATACCTTCCAAAACACCGATGGCAATGAAAGTAGT
CAATGTGTACGACAAGCATCGCAGGAACCAACTACTGAAGGAGCTTGAGA
CTCTCTCGACTCATATCAGTCGATATCTTGTTAGGTTTTATGGGGCATTT
TACGACGGATCGGGGGCTGTACATATTGCTCTCGAGTATATGGATCATGG
CTGCTTAGCCACCTTCGTTCAGCGCGTCGGACCAATTCCAGAAAGAGTTG
TGCAGATGATTGCTCACGACTGCGTGAAAGGCCTGCGTTTCTTGCATCGA
CATCATGTGCTCCACCGTGACTTCAAGACGGCCAACATACTTCTGTCCCG
AAGATTGTGCCGGGCGAAACTCAGCGATTTTGGTCTGGCTCGTGACTTGA
ATCCTGGTGTCTCAAAGGTTGATACCTTTGTTGGAACTGTAGCGTATATG
TCACCAGAACGTCTGAATGGAAGCAAATATACTTACGCGTCGGACGTTTG
GGCCCTTGGAGTATCCATCATGGAGTGCCTTTTGGGCAAATATCCTTTTG
ATCGTCCCCAAAACTACTTTGATTACATTGAGGCGACAATGGCAACTAAC
GTACTAAGCGGGTTCAAAAGGGAATGTGCGAAATTCTCTTCAGAAGTCAA
AGACTTTGTCGAAAGATGTACGTACACTGACCCGAAAAAGAGGGCCACAG
TGGCAGAGCTTATGGAGCACCCATGGCTAAATGGAACCACTAGAGACACG
GAACTTTTCGGGTCTTGGCTAGATGAGTGTCGAATAATATCGATGCGGCC
GACATGTTGA

protein sequence of Gcaud7526.t1

>Gcaud7526.t1 ID=Gcaud7526.t1|Name=Gcaud7526.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=670bp
MGLFSRKASSRNIGQSDRGNHGPLSPRKNAPRRISKLNDLFSDGKPSTEM
PGTPVTDATVFHEAVSAPTIALDDFVQGTEASSEVEASVLMNLSVDGDRN
CAYSDRRDRNRPTAAASNQDRTMQITDLARRNSIKRSVSRKIARSESRRQ
LLNIKDTSLSEDRATSTAMSRSKSALVSQDKAVNRSLDRSSSIKVSMNDR
KLPVPMSRSSSFSARVRALNSKDQSSSDVKVDDTLNAMGVMAVTDEVDEE
LEISHSSLRNFSKLEDVEQKEGSDLKKSVTDARTPSCTAEQHSNTESIKS
AKVRKRPPPLMAKEEVKSVTDSTTDWPSGGYFGSDGGFVTGGFRITAEGM
LDKPLTVTRQDSDDDDDGGVPQSHRMIVIAKGLKEFRTGPTIGAGAAGRV
YIAEHIPSKTPMAMKVVNVYDKHRRNQLLKELETLSTHISRYLVRFYGAF
YDGSGAVHIALEYMDHGCLATFVQRVGPIPERVVQMIAHDCVKGLRFLHR
HHVLHRDFKTANILLSRRLCRAKLSDFGLARDLNPGVSKVDTFVGTVAYM
SPERLNGSKYTYASDVWALGVSIMECLLGKYPFDRPQNYFDYIEATMATN
VLSGFKRECAKFSSEVKDFVERCTYTDPKKRATVAELMEHPWLNGTTRDT
ELFGSWLDECRIISMRPTC*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:22904..24913-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7526.t1 ID=Gcaud7526.t1|Name=Gcaud7526.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:22904..24913- (Gracilaria caudata M_176_S67 male)
ATGGGTCTGTTTAGTCGTAAGGCTTCTTCAAGAAATATTGGGCAGTCGGA
TAGAGGTAATCACGGCCCACTATCTCCACGAAAGAATGCGCCGAGGCGCA
TTTCAAAACTCAATGATTTGTTTTCTGACGGGAAACCGAGCACTGAGATG
CCTGGAACGCCAGTGACTGATGCTACTGTTTTTCACGAAGCCGTCTCAGC
ACCGACTATTGCATTGGATGACTTTGTTCAAGGTACAGAAGCGTCATCAG
AAGTGGAGGCTTCTGTACTCATGAATCTAAGTGTTGATGGAGACAGGAAT
TGTGCGTACTCTGATCGAAGGGATAGAAATCGTCCAACAGCAGCTGCTTC
AAACCAAGACCGGACGATGCAAATAACAGATCTTGCTAGGCGAAACTCTA
TCAAACGTTCTGTGTCGAGGAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTCTTGAACATAAAGGATACCAGTTTAAGCGAGGATCGCGCTACCAGCAC
TGCGATGAGTCGTTCGAAATCTGCTTTAGTGTCCCAGGATAAAGCTGTGA
ACCGCAGCCTGGACCGTTCGAGTTCTATCAAGGTCAGTATGAATGACAGG
AAACTTCCTGTTCCAATGTCTAGATCCAGTTCATTCTCTGCACGTGTACG
AGCCCTGAACTCAAAAGACCAATCCTCATCAGATGTGAAGGTGGATGACA
CTTTGAACGCAATGGGTGTTATGGCGGTAACGGATGAAGTTGATGAAGAA
CTTGAAATCAGTCATTCCAGTCTACGAAACTTTTCAAAATTGGAAGATGT
AGAACAGAAGGAGGGTTCGGATTTGAAGAAAAGCGTCACCGATGCTAGGA
CCCCATCTTGTACCGCTGAACAACACTCTAACACTGAAAGCATTAAATCA
GCGAAAGTCAGGAAGCGGCCTCCCCCTCTCATGGCAAAAGAAGAGGTTAA
ATCAGTGACAGATTCTACAACGGACTGGCCAAGCGGAGGATACTTTGGTA
GTGATGGAGGATTCGTCACTGGCGGTTTTCGTATTACTGCAGAGGGAATG
CTTGACAAACCACTTACGGTTACACGTCAGGATTCAGATGACGACGATGA
TGGGGGAGTTCCTCAATCACATCGAATGATTGTGATAGCCAAAGGTTTGA
AAGAATTTCGCACAGGCCCTACCATTGGCGCAGGAGCGGCAGGTAGGGTA
TATATTGCAGAGCACATACCTTCCAAAACACCGATGGCAATGAAAGTAGT
CAATGTGTACGACAAGCATCGCAGGAACCAACTACTGAAGGAGCTTGAGA
CTCTCTCGACTCATATCAGTCGATATCTTGTTAGGTTTTATGGGGCATTT
TACGACGGATCGGGGGCTGTACATATTGCTCTCGAGTATATGGATCATGG
CTGCTTAGCCACCTTCGTTCAGCGCGTCGGACCAATTCCAGAAAGAGTTG
TGCAGATGATTGCTCACGACTGCGTGAAAGGCCTGCGTTTCTTGCATCGA
CATCATGTGCTCCACCGTGACTTCAAGACGGCCAACATACTTCTGTCCCG
AAGATTGTGCCGGGCGAAACTCAGCGATTTTGGTCTGGCTCGTGACTTGA
ATCCTGGTGTCTCAAAGGTTGATACCTTTGTTGGAACTGTAGCGTATATG
TCACCAGAACGTCTGAATGGAAGCAAATATACTTACGCGTCGGACGTTTG
GGCCCTTGGAGTATCCATCATGGAGTGCCTTTTGGGCAAATATCCTTTTG
ATCGTCCCCAAAACTACTTTGATTACATTGAGGCGACAATGGCAACTAAC
GTACTAAGCGGGTTCAAAAGGGAATGTGCGAAATTCTCTTCAGAAGTCAA
AGACTTTGTCGAAAGATGTACGTACACTGACCCGAAAAAGAGGGCCACAG
TGGCAGAGCTTATGGAGCACCCATGGCTAAATGGAACCACTAGAGACACG
GAACTTTTCGGGTCTTGGCTAGATGAGTGTCGAATAATATCGATGCGGCC
GACATGTTGA

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:22904..24913-

>Gcaud7526.t1 ID=Gcaud7526.t1|Name=Gcaud7526.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2010bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:22904..24913- (Gracilaria caudata M_176_S67 male)
ATGGGTCTGTTTAGTCGTAAGGCTTCTTCAAGAAATATTGGGCAGTCGGA
TAGAGGTAATCACGGCCCACTATCTCCACGAAAGAATGCGCCGAGGCGCA
TTTCAAAACTCAATGATTTGTTTTCTGACGGGAAACCGAGCACTGAGATG
CCTGGAACGCCAGTGACTGATGCTACTGTTTTTCACGAAGCCGTCTCAGC
ACCGACTATTGCATTGGATGACTTTGTTCAAGGTACAGAAGCGTCATCAG
AAGTGGAGGCTTCTGTACTCATGAATCTAAGTGTTGATGGAGACAGGAAT
TGTGCGTACTCTGATCGAAGGGATAGAAATCGTCCAACAGCAGCTGCTTC
AAACCAAGACCGGACGATGCAAATAACAGATCTTGCTAGGCGAAACTCTA
TCAAACGTTCTGTGTCGAGGAAGATTGCACGGTCCGAAAGCCGTCGGCAA
CTCTTGAACATAAAGGATACCAGTTTAAGCGAGGATCGCGCTACCAGCAC
TGCGATGAGTCGTTCGAAATCTGCTTTAGTGTCCCAGGATAAAGCTGTGA
ACCGCAGCCTGGACCGTTCGAGTTCTATCAAGGTCAGTATGAATGACAGG
AAACTTCCTGTTCCAATGTCTAGATCCAGTTCATTCTCTGCACGTGTACG
AGCCCTGAACTCAAAAGACCAATCCTCATCAGATGTGAAGGTGGATGACA
CTTTGAACGCAATGGGTGTTATGGCGGTAACGGATGAAGTTGATGAAGAA
CTTGAAATCAGTCATTCCAGTCTACGAAACTTTTCAAAATTGGAAGATGT
AGAACAGAAGGAGGGTTCGGATTTGAAGAAAAGCGTCACCGATGCTAGGA
CCCCATCTTGTACCGCTGAACAACACTCTAACACTGAAAGCATTAAATCA
GCGAAAGTCAGGAAGCGGCCTCCCCCTCTCATGGCAAAAGAAGAGGTTAA
ATCAGTGACAGATTCTACAACGGACTGGCCAAGCGGAGGATACTTTGGTA
GTGATGGAGGATTCGTCACTGGCGGTTTTCGTATTACTGCAGAGGGAATG
CTTGACAAACCACTTACGGTTACACGTCAGGATTCAGATGACGACGATGA
TGGGGGAGTTCCTCAATCACATCGAATGATTGTGATAGCCAAAGGTTTGA
AAGAATTTCGCACAGGCCCTACCATTGGCGCAGGAGCGGCAGGTAGGGTA
TATATTGCAGAGCACATACCTTCCAAAACACCGATGGCAATGAAAGTAGT
CAATGTGTACGACAAGCATCGCAGGAACCAACTACTGAAGGAGCTTGAGA
CTCTCTCGACTCATATCAGTCGATATCTTGTTAGGTTTTATGGGGCATTT
TACGACGGATCGGGGGCTGTACATATTGCTCTCGAGTATATGGATCATGG
CTGCTTAGCCACCTTCGTTCAGCGCGTCGGACCAATTCCAGAAAGAGTTG
TGCAGATGATTGCTCACGACTGCGTGAAAGGCCTGCGTTTCTTGCATCGA
CATCATGTGCTCCACCGTGACTTCAAGACGGCCAACATACTTCTGTCCCG
AAGATTGTGCCGGGCGAAACTCAGCGATTTTGGTCTGGCTCGTGACTTGA
ATCCTGGTGTCTCAAAGGTTGATACCTTTGTTGGAACTGTAGCGTATATG
TCACCAGAACGTCTGAATGGAAGCAAATATACTTACGCGTCGGACGTTTG
GGCCCTTGGAGTATCCATCATGGAGTGCCTTTTGGGCAAATATCCTTTTG
ATCGTCCCCAAAACTACTTTGATTACATTGAGGCGACAATGGCAACTAAC
GTACTAAGCGGGTTCAAAAGGGAATGTGCGAAATTCTCTTCAGAAGTCAA
AGACTTTGTCGAAAGATGTACGTACACTGACCCGAAAAAGAGGGCCACAG
TGGCAGAGCTTATGGAGCACCCATGGCTAAATGGAACCACTAGAGACACG
GAACTTTTCGGGTCTTGGCTAGATGAGTGTCGAATAATATCGATGCGGCC
GACATGTTGA