Gcaud2019.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2019.t1
Unique Name	Gcaud2019.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	526

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1148_length_13309_cov_4.323498	contig	NODE_1148_length_13309_cov_4.323498:2741..4318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2019	Gcaud2019	Gracilaria caudata M_176_S67 male	gene	NODE_1148_length_13309_cov_4.323498 2741..4318 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2019.t1.CDS1	Gcaud2019.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1148_length_13309_cov_4.323498 2741..4318 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2019.t1.exon1	Gcaud2019.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1148_length_13309_cov_4.323498 2741..4318 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2019.t1.stop1	Gcaud2019.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1148_length_13309_cov_4.323498 4316..4318 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2019.t1	Gcaud2019.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1148_length_13309_cov_4.323498 2741..4318 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+
coding sequence from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+

mRNA sequence

>Gcaud2019.t1 ID=Gcaud2019.t1|Name=Gcaud2019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=526bp
CKKCAPLRKDISESIPPWAPGRKSRDTSSVAELAKQPAYQSSSRGRALSA
SSGCKVESKLRNRIKLEAKKSNDQSQKGVKEELEVCQLSSDDHVNKQREN
LHASAACEKNIDNAASYMRIGSRCHGQLKTREDLQSTSQVTLKVVKRRKE
NAGRSPLFWPQSYSTPACKPSISEGQNDYTNAKMRSAKSRNQANRTGGVS
DSLPLNAIPKKRKNPPSPTLETSHAIKPAFSTKQNGFRDGKSLSELERPL
KEQRRCPKSISVGGSAATEPTTRLIKPAEEILCLVHHSEAKELSLRETLE
DMRQKCELLEHTSTVGEYAQHFFEESIRTKMITPEVWCLPEPSLSSWKSA
CVLLAGNLRDEMRETSETCCVFGTKDRKQTAKMLRSMEVKFKKSSTERLE
KRGSDEYLRNILARWSRRLKISDRERNIAGEVLDHLPKVFQSEDPMKSTI
VAVSLYVALSETRKSLPVVQKLIQNVSGVAASTFMSRTRQVMKNEEFSPI
LKNIHDFRDAKEDRSESIHFHIPSA*

spliced messenger RNA

>Gcaud2019.t1 ID=Gcaud2019.t1|Name=Gcaud2019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TGCAAGAAATGCGCCCCGCTTCGCAAGGACATCAGCGAGAGCATCCCGCC
GTGGGCGCCTGGACGCAAGTCACGAGACACGAGTTCGGTGGCGGAACTCG
CGAAGCAACCGGCATACCAGTCGTCCAGTCGAGGAAGAGCACTCTCGGCT
TCCAGTGGGTGCAAGGTGGAATCAAAGCTCCGTAACCGAATCAAACTGGA
GGCGAAGAAGAGCAATGATCAATCCCAAAAGGGAGTGAAAGAAGAGCTGG
AAGTCTGCCAGTTATCTTCCGATGATCACGTGAACAAGCAAAGGGAAAAT
CTTCATGCATCTGCAGCTTGCGAGAAGAACATTGATAACGCCGCTTCCTA
TATGCGTATAGGGTCCAGATGTCATGGGCAACTGAAGACAAGGGAAGACT
TGCAATCTACGTCGCAAGTTACCTTGAAAGTTGTCAAACGAAGAAAAGAA
AACGCAGGAAGATCTCCGTTGTTCTGGCCGCAGTCCTACTCCACTCCCGC
CTGTAAGCCTAGCATTTCTGAAGGCCAGAATGATTATACGAATGCAAAGA
TGCGAAGCGCTAAGTCGAGAAACCAAGCCAATAGGACTGGTGGCGTATCG
GATTCTCTACCTCTTAATGCTATTCCAAAAAAGAGGAAAAATCCCCCGTC
TCCGACTCTAGAAACATCCCATGCAATCAAACCAGCTTTTTCGACAAAAC
AAAATGGTTTTCGGGACGGGAAAAGTCTTTCGGAGTTAGAGCGGCCTCTC
AAGGAACAGAGACGCTGCCCTAAGAGCATCTCTGTTGGAGGTTCTGCTGC
CACTGAACCTACCACACGTCTCATAAAGCCGGCTGAAGAGATCCTATGTC
TTGTACACCACTCCGAAGCTAAAGAATTGTCGCTTCGGGAGACTCTCGAA
GATATGCGACAAAAATGTGAGCTGCTGGAGCATACCAGTACGGTTGGCGA
ATATGCGCAGCACTTTTTCGAGGAAAGCATCCGCACGAAAATGATTACGC
CAGAAGTTTGGTGCCTGCCTGAACCGTCTCTGTCGTCGTGGAAATCAGCC
TGTGTGCTTTTGGCAGGTAATCTACGGGATGAAATGCGGGAAACAAGTGA
AACGTGCTGCGTCTTTGGAACGAAAGATAGGAAACAAACCGCGAAAATGC
TTCGCTCTATGGAGGTGAAATTCAAAAAAAGTTCAACCGAGCGATTGGAG
AAGAGAGGAAGCGATGAATATTTACGAAATATACTTGCTCGATGGAGTCG
TCGTCTTAAGATATCAGACAGAGAGCGAAATATTGCCGGGGAGGTACTTG
ACCATCTTCCTAAGGTTTTCCAGAGTGAGGACCCAATGAAGTCGACAATA
GTGGCTGTATCTTTGTACGTTGCGCTGAGTGAGACAAGAAAAAGTTTACC
CGTTGTACAAAAGTTGATCCAGAACGTTTCTGGTGTGGCTGCTTCCACTT
TTATGAGCAGAACGCGCCAAGTAATGAAAAATGAAGAGTTCAGCCCAATA
CTCAAAAATATCCATGACTTCAGAGACGCAAAAGAAGACCGTAGTGAAAG
TATCCATTTCCATATTCCTAGTGCTTGA

protein sequence of Gcaud2019.t1

>Gcaud2019.t1 ID=Gcaud2019.t1|Name=Gcaud2019.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=526bp
CKKCAPLRKDISESIPPWAPGRKSRDTSSVAELAKQPAYQSSSRGRALSA
SSGCKVESKLRNRIKLEAKKSNDQSQKGVKEELEVCQLSSDDHVNKQREN
LHASAACEKNIDNAASYMRIGSRCHGQLKTREDLQSTSQVTLKVVKRRKE
NAGRSPLFWPQSYSTPACKPSISEGQNDYTNAKMRSAKSRNQANRTGGVS
DSLPLNAIPKKRKNPPSPTLETSHAIKPAFSTKQNGFRDGKSLSELERPL
KEQRRCPKSISVGGSAATEPTTRLIKPAEEILCLVHHSEAKELSLRETLE
DMRQKCELLEHTSTVGEYAQHFFEESIRTKMITPEVWCLPEPSLSSWKSA
CVLLAGNLRDEMRETSETCCVFGTKDRKQTAKMLRSMEVKFKKSSTERLE
KRGSDEYLRNILARWSRRLKISDRERNIAGEVLDHLPKVFQSEDPMKSTI
VAVSLYVALSETRKSLPVVQKLIQNVSGVAASTFMSRTRQVMKNEEFSPI
LKNIHDFRDAKEDRSESIHFHIPSA*

mRNA from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2019.t1 ID=Gcaud2019.t1|Name=Gcaud2019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+ (Gracilaria caudata M_176_S67 male)
TGCAAGAAATGCGCCCCGCTTCGCAAGGACATCAGCGAGAGCATCCCGCC
GTGGGCGCCTGGACGCAAGTCACGAGACACGAGTTCGGTGGCGGAACTCG
CGAAGCAACCGGCATACCAGTCGTCCAGTCGAGGAAGAGCACTCTCGGCT
TCCAGTGGGTGCAAGGTGGAATCAAAGCTCCGTAACCGAATCAAACTGGA
GGCGAAGAAGAGCAATGATCAATCCCAAAAGGGAGTGAAAGAAGAGCTGG
AAGTCTGCCAGTTATCTTCCGATGATCACGTGAACAAGCAAAGGGAAAAT
CTTCATGCATCTGCAGCTTGCGAGAAGAACATTGATAACGCCGCTTCCTA
TATGCGTATAGGGTCCAGATGTCATGGGCAACTGAAGACAAGGGAAGACT
TGCAATCTACGTCGCAAGTTACCTTGAAAGTTGTCAAACGAAGAAAAGAA
AACGCAGGAAGATCTCCGTTGTTCTGGCCGCAGTCCTACTCCACTCCCGC
CTGTAAGCCTAGCATTTCTGAAGGCCAGAATGATTATACGAATGCAAAGA
TGCGAAGCGCTAAGTCGAGAAACCAAGCCAATAGGACTGGTGGCGTATCG
GATTCTCTACCTCTTAATGCTATTCCAAAAAAGAGGAAAAATCCCCCGTC
TCCGACTCTAGAAACATCCCATGCAATCAAACCAGCTTTTTCGACAAAAC
AAAATGGTTTTCGGGACGGGAAAAGTCTTTCGGAGTTAGAGCGGCCTCTC
AAGGAACAGAGACGCTGCCCTAAGAGCATCTCTGTTGGAGGTTCTGCTGC
CACTGAACCTACCACACGTCTCATAAAGCCGGCTGAAGAGATCCTATGTC
TTGTACACCACTCCGAAGCTAAAGAATTGTCGCTTCGGGAGACTCTCGAA
GATATGCGACAAAAATGTGAGCTGCTGGAGCATACCAGTACGGTTGGCGA
ATATGCGCAGCACTTTTTCGAGGAAAGCATCCGCACGAAAATGATTACGC
CAGAAGTTTGGTGCCTGCCTGAACCGTCTCTGTCGTCGTGGAAATCAGCC
TGTGTGCTTTTGGCAGGTAATCTACGGGATGAAATGCGGGAAACAAGTGA
AACGTGCTGCGTCTTTGGAACGAAAGATAGGAAACAAACCGCGAAAATGC
TTCGCTCTATGGAGGTGAAATTCAAAAAAAGTTCAACCGAGCGATTGGAG
AAGAGAGGAAGCGATGAATATTTACGAAATATACTTGCTCGATGGAGTCG
TCGTCTTAAGATATCAGACAGAGAGCGAAATATTGCCGGGGAGGTACTTG
ACCATCTTCCTAAGGTTTTCCAGAGTGAGGACCCAATGAAGTCGACAATA
GTGGCTGTATCTTTGTACGTTGCGCTGAGTGAGACAAGAAAAAGTTTACC
CGTTGTACAAAAGTTGATCCAGAACGTTTCTGGTGTGGCTGCTTCCACTT
TTATGAGCAGAACGCGCCAAGTAATGAAAAATGAAGAGTTCAGCCCAATA
CTCAAAAATATCCATGACTTCAGAGACGCAAAAGAAGACCGTAGTGAAAG
TATCCATTTCCATATTCCTAGTGCTTGA

Coding sequence (CDS) from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+

>Gcaud2019.t1 ID=Gcaud2019.t1|Name=Gcaud2019.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1578bp|location=Sequence derived from alignment at NODE_1148_length_13309_cov_4.323498:2741..4318+ (Gracilaria caudata M_176_S67 male)
TGCAAGAAATGCGCCCCGCTTCGCAAGGACATCAGCGAGAGCATCCCGCC
GTGGGCGCCTGGACGCAAGTCACGAGACACGAGTTCGGTGGCGGAACTCG
CGAAGCAACCGGCATACCAGTCGTCCAGTCGAGGAAGAGCACTCTCGGCT
TCCAGTGGGTGCAAGGTGGAATCAAAGCTCCGTAACCGAATCAAACTGGA
GGCGAAGAAGAGCAATGATCAATCCCAAAAGGGAGTGAAAGAAGAGCTGG
AAGTCTGCCAGTTATCTTCCGATGATCACGTGAACAAGCAAAGGGAAAAT
CTTCATGCATCTGCAGCTTGCGAGAAGAACATTGATAACGCCGCTTCCTA
TATGCGTATAGGGTCCAGATGTCATGGGCAACTGAAGACAAGGGAAGACT
TGCAATCTACGTCGCAAGTTACCTTGAAAGTTGTCAAACGAAGAAAAGAA
AACGCAGGAAGATCTCCGTTGTTCTGGCCGCAGTCCTACTCCACTCCCGC
CTGTAAGCCTAGCATTTCTGAAGGCCAGAATGATTATACGAATGCAAAGA
TGCGAAGCGCTAAGTCGAGAAACCAAGCCAATAGGACTGGTGGCGTATCG
GATTCTCTACCTCTTAATGCTATTCCAAAAAAGAGGAAAAATCCCCCGTC
TCCGACTCTAGAAACATCCCATGCAATCAAACCAGCTTTTTCGACAAAAC
AAAATGGTTTTCGGGACGGGAAAAGTCTTTCGGAGTTAGAGCGGCCTCTC
AAGGAACAGAGACGCTGCCCTAAGAGCATCTCTGTTGGAGGTTCTGCTGC
CACTGAACCTACCACACGTCTCATAAAGCCGGCTGAAGAGATCCTATGTC
TTGTACACCACTCCGAAGCTAAAGAATTGTCGCTTCGGGAGACTCTCGAA
GATATGCGACAAAAATGTGAGCTGCTGGAGCATACCAGTACGGTTGGCGA
ATATGCGCAGCACTTTTTCGAGGAAAGCATCCGCACGAAAATGATTACGC
CAGAAGTTTGGTGCCTGCCTGAACCGTCTCTGTCGTCGTGGAAATCAGCC
TGTGTGCTTTTGGCAGGTAATCTACGGGATGAAATGCGGGAAACAAGTGA
AACGTGCTGCGTCTTTGGAACGAAAGATAGGAAACAAACCGCGAAAATGC
TTCGCTCTATGGAGGTGAAATTCAAAAAAAGTTCAACCGAGCGATTGGAG
AAGAGAGGAAGCGATGAATATTTACGAAATATACTTGCTCGATGGAGTCG
TCGTCTTAAGATATCAGACAGAGAGCGAAATATTGCCGGGGAGGTACTTG
ACCATCTTCCTAAGGTTTTCCAGAGTGAGGACCCAATGAAGTCGACAATA
GTGGCTGTATCTTTGTACGTTGCGCTGAGTGAGACAAGAAAAAGTTTACC
CGTTGTACAAAAGTTGATCCAGAACGTTTCTGGTGTGGCTGCTTCCACTT
TTATGAGCAGAACGCGCCAAGTAATGAAAAATGAAGAGTTCAGCCCAATA
CTCAAAAATATCCATGACTTCAGAGACGCAAAAGAAGACCGTAGTGAAAG
TATCCATTTCCATATTCCTAGTGCTTGA