Gcaud8487.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8487.t1
Unique NameGcaud8487.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1141_length_13362_cov_4.300354contigNODE_1141_length_13362_cov_4.300354:7966..9114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003064968.1
PFAMsMethyltransf_21
Max annot lvl2759|Eukaryota
Evalue1.46e-20
EggNOG OGs2CXQ7@1|root,2RZ16@2759|Eukaryota
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8487Gcaud8487Gracilaria caudata M_176_S67 malegeneNODE_1141_length_13362_cov_4.300354 7966..9114 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8487.t1.stop1Gcaud8487.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1141_length_13362_cov_4.300354 7966..7968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8487.t1.CDS1Gcaud8487.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1141_length_13362_cov_4.300354 7966..9114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8487.t1.exon1Gcaud8487.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1141_length_13362_cov_4.300354 7966..9114 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8487.t1.start1Gcaud8487.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1141_length_13362_cov_4.300354 9112..9114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8487.t1Gcaud8487.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1141_length_13362_cov_4.300354 7966..9114 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8487.t1 ID=Gcaud8487.t1|Name=Gcaud8487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=383bp
MVSVSTVTMSILLLVFFGVQTKARPRLERISMPKEMGSKLDRLDSDMDNP
QSVPGVAPNEKMVSELDKAKASEEPIRKGAHESAERAKTLEKGNGDRKSK
ELTAEELDGEGLALLNWSARDRKELKEPAECRQWRLAARDPRKLRLYRDH
FVSHDFTDWFVYEAFFTELWHTKQSKIRPVYLDVAANHARRWSGTYFLDR
CMGWDGVCVEANEKYWEELRTERHCKVVEKCVSDKERTVNFSLTDAYGGV
VSDEGVHGVNGRKHQQESKYKGRFRGIKPMKCSTLGKEVQEKHVHFWSLD
VEGHEIEVLQGFDWNKTIVDVIVTENRGKEVKAILSGRGYEQVSRVLKDD
IWIRNGSGFEVSERMVRLMRSFDVSSYRFLGV*
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spliced messenger RNA

>Gcaud8487.t1 ID=Gcaud8487.t1|Name=Gcaud8487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:7966..9114- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGGTGTCTACGGTCACAATGAGCATTCTACTTCTCGTGTTTTT
TGGCGTACAGACAAAAGCTCGGCCAAGATTGGAAAGGATATCAATGCCAA
AAGAGATGGGAAGCAAGCTAGACAGACTTGACTCTGACATGGATAACCCG
CAAAGCGTGCCAGGTGTTGCTCCTAATGAGAAGATGGTATCTGAACTTGA
CAAGGCCAAGGCTTCTGAAGAACCAATTCGGAAAGGTGCACACGAAAGTG
CAGAACGAGCAAAGACTCTAGAGAAAGGGAATGGGGACAGGAAAAGCAAA
GAATTGACTGCCGAGGAGTTGGACGGTGAGGGACTTGCTCTCTTAAATTG
GTCAGCTCGGGACAGGAAAGAACTGAAAGAACCCGCGGAATGCCGACAGT
GGAGATTAGCAGCCAGAGATCCCCGCAAACTCCGTTTGTATCGAGACCAT
TTTGTATCGCACGACTTTACCGATTGGTTTGTTTACGAAGCGTTCTTCAC
TGAGTTGTGGCACACAAAACAAAGCAAGATACGACCTGTGTACCTAGACG
TAGCCGCAAATCATGCGAGGCGATGGTCAGGTACATACTTCCTCGATCGG
TGCATGGGCTGGGATGGTGTTTGCGTAGAGGCAAATGAAAAATATTGGGA
AGAGTTGCGAACTGAACGGCATTGCAAAGTAGTGGAAAAGTGTGTGAGTG
ACAAAGAGAGAACAGTTAACTTCTCGCTGACTGATGCATACGGGGGCGTG
GTATCGGATGAAGGAGTGCACGGAGTGAATGGGCGCAAGCACCAGCAGGA
ATCCAAGTACAAAGGCAGGTTCCGCGGAATCAAGCCAATGAAGTGCTCCA
CGCTTGGCAAAGAAGTACAAGAAAAACACGTGCACTTCTGGAGCCTCGAT
GTAGAAGGGCACGAAATCGAAGTGCTGCAAGGTTTCGACTGGAACAAGAC
TATTGTGGATGTGATCGTGACAGAAAACCGAGGCAAGGAAGTAAAGGCGA
TTCTATCGGGGCGCGGGTACGAACAAGTGAGCAGAGTACTCAAGGACGAT
ATCTGGATCCGCAACGGAAGCGGATTTGAGGTGAGCGAGCGCATGGTGCG
CTTAATGCGAAGCTTTGACGTATCTAGCTACCGCTTTCTAGGGGTTTAG
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protein sequence of Gcaud8487.t1

>Gcaud8487.t1 ID=Gcaud8487.t1|Name=Gcaud8487.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=383bp
MVSVSTVTMSILLLVFFGVQTKARPRLERISMPKEMGSKLDRLDSDMDNP
QSVPGVAPNEKMVSELDKAKASEEPIRKGAHESAERAKTLEKGNGDRKSK
ELTAEELDGEGLALLNWSARDRKELKEPAECRQWRLAARDPRKLRLYRDH
FVSHDFTDWFVYEAFFTELWHTKQSKIRPVYLDVAANHARRWSGTYFLDR
CMGWDGVCVEANEKYWEELRTERHCKVVEKCVSDKERTVNFSLTDAYGGV
VSDEGVHGVNGRKHQQESKYKGRFRGIKPMKCSTLGKEVQEKHVHFWSLD
VEGHEIEVLQGFDWNKTIVDVIVTENRGKEVKAILSGRGYEQVSRVLKDD
IWIRNGSGFEVSERMVRLMRSFDVSSYRFLGV*
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mRNA from alignment at NODE_1141_length_13362_cov_4.300354:7966..9114-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8487.t1 ID=Gcaud8487.t1|Name=Gcaud8487.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:7966..9114- (Gracilaria caudata M_176_S67 male)
ATGGTTTCGGTGTCTACGGTCACAATGAGCATTCTACTTCTCGTGTTTTT
TGGCGTACAGACAAAAGCTCGGCCAAGATTGGAAAGGATATCAATGCCAA
AAGAGATGGGAAGCAAGCTAGACAGACTTGACTCTGACATGGATAACCCG
CAAAGCGTGCCAGGTGTTGCTCCTAATGAGAAGATGGTATCTGAACTTGA
CAAGGCCAAGGCTTCTGAAGAACCAATTCGGAAAGGTGCACACGAAAGTG
CAGAACGAGCAAAGACTCTAGAGAAAGGGAATGGGGACAGGAAAAGCAAA
GAATTGACTGCCGAGGAGTTGGACGGTGAGGGACTTGCTCTCTTAAATTG
GTCAGCTCGGGACAGGAAAGAACTGAAAGAACCCGCGGAATGCCGACAGT
GGAGATTAGCAGCCAGAGATCCCCGCAAACTCCGTTTGTATCGAGACCAT
TTTGTATCGCACGACTTTACCGATTGGTTTGTTTACGAAGCGTTCTTCAC
TGAGTTGTGGCACACAAAACAAAGCAAGATACGACCTGTGTACCTAGACG
TAGCCGCAAATCATGCGAGGCGATGGTCAGGTACATACTTCCTCGATCGG
TGCATGGGCTGGGATGGTGTTTGCGTAGAGGCAAATGAAAAATATTGGGA
AGAGTTGCGAACTGAACGGCATTGCAAAGTAGTGGAAAAGTGTGTGAGTG
ACAAAGAGAGAACAGTTAACTTCTCGCTGACTGATGCATACGGGGGCGTG
GTATCGGATGAAGGAGTGCACGGAGTGAATGGGCGCAAGCACCAGCAGGA
ATCCAAGTACAAAGGCAGGTTCCGCGGAATCAAGCCAATGAAGTGCTCCA
CGCTTGGCAAAGAAGTACAAGAAAAACACGTGCACTTCTGGAGCCTCGAT
GTAGAAGGGCACGAAATCGAAGTGCTGCAAGGTTTCGACTGGAACAAGAC
TATTGTGGATGTGATCGTGACAGAAAACCGAGGCAAGGAAGTAAAGGCGA
TTCTATCGGGGCGCGGGTACGAACAAGTGAGCAGAGTACTCAAGGACGAT
ATCTGGATCCGCAACGGAAGCGGATTTGAGGTGAGCGAGCGCATGGTGCG
CTTAATGCGAAGCTTTGACGTATCTAGCTACCGCTTTCTAGGGGTTTAG
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Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:7966..9114-

>Gcaud8487.t1 ID=Gcaud8487.t1|Name=Gcaud8487.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1149bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:7966..9114- (Gracilaria caudata M_176_S67 male)
ATGGTTTCGGTGTCTACGGTCACAATGAGCATTCTACTTCTCGTGTTTTT
TGGCGTACAGACAAAAGCTCGGCCAAGATTGGAAAGGATATCAATGCCAA
AAGAGATGGGAAGCAAGCTAGACAGACTTGACTCTGACATGGATAACCCG
CAAAGCGTGCCAGGTGTTGCTCCTAATGAGAAGATGGTATCTGAACTTGA
CAAGGCCAAGGCTTCTGAAGAACCAATTCGGAAAGGTGCACACGAAAGTG
CAGAACGAGCAAAGACTCTAGAGAAAGGGAATGGGGACAGGAAAAGCAAA
GAATTGACTGCCGAGGAGTTGGACGGTGAGGGACTTGCTCTCTTAAATTG
GTCAGCTCGGGACAGGAAAGAACTGAAAGAACCCGCGGAATGCCGACAGT
GGAGATTAGCAGCCAGAGATCCCCGCAAACTCCGTTTGTATCGAGACCAT
TTTGTATCGCACGACTTTACCGATTGGTTTGTTTACGAAGCGTTCTTCAC
TGAGTTGTGGCACACAAAACAAAGCAAGATACGACCTGTGTACCTAGACG
TAGCCGCAAATCATGCGAGGCGATGGTCAGGTACATACTTCCTCGATCGG
TGCATGGGCTGGGATGGTGTTTGCGTAGAGGCAAATGAAAAATATTGGGA
AGAGTTGCGAACTGAACGGCATTGCAAAGTAGTGGAAAAGTGTGTGAGTG
ACAAAGAGAGAACAGTTAACTTCTCGCTGACTGATGCATACGGGGGCGTG
GTATCGGATGAAGGAGTGCACGGAGTGAATGGGCGCAAGCACCAGCAGGA
ATCCAAGTACAAAGGCAGGTTCCGCGGAATCAAGCCAATGAAGTGCTCCA
CGCTTGGCAAAGAAGTACAAGAAAAACACGTGCACTTCTGGAGCCTCGAT
GTAGAAGGGCACGAAATCGAAGTGCTGCAAGGTTTCGACTGGAACAAGAC
TATTGTGGATGTGATCGTGACAGAAAACCGAGGCAAGGAAGTAAAGGCGA
TTCTATCGGGGCGCGGGTACGAACAAGTGAGCAGAGTACTCAAGGACGAT
ATCTGGATCCGCAACGGAAGCGGATTTGAGGTGAGCGAGCGCATGGTGCG
CTTAATGCGAAGCTTTGACGTATCTAGCTACCGCTTTCTAGGGGTTTAG
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