Gcaud2079.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2079.t1
Unique Name	Gcaud2079.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_503_length_23508_cov_5.792160	contig	NODE_503_length_23508_cov_5.792160:20653..22014 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706981.1
Preferred name	PRO2
PFAMs	Aldedh
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00684
KEGG ko	ko:K00147
KEGG Reaction	R03313
KEGG Pathway	ko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230
KEGG Module	M00015
GOs	GO:0003674,GO:0003824,GO:0004350,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	2.31e-163
EggNOG OGs	COG0014@1\|root,KOG4165@2759\|Eukaryota
EC	1.2.1.41
Description	glutamate-5-semialdehyde dehydrogenase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2079	Gcaud2079	Gracilaria caudata M_176_S67 male	gene	NODE_503_length_23508_cov_5.792160 20653..22014 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2079.t1.start1	Gcaud2079.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_503_length_23508_cov_5.792160 20653..20655 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2079.t1.CDS1	Gcaud2079.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 20653..22014 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2079.t1.exon1	Gcaud2079.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 20653..22014 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2079.t1.stop1	Gcaud2079.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_503_length_23508_cov_5.792160 22012..22014 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2079.t1	Gcaud2079.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_503_length_23508_cov_5.792160 20653..22014 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+
coding sequence from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+

mRNA sequence

>Gcaud2079.t1 ID=Gcaud2079.t1|Name=Gcaud2079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MNGSQTSKPSAIEALALRARNASRAMLSLSTSDRNNALEAVHDHLLHAKD
AILNANETDKKAAQDLLAKGSLTSASVKRLDLGGKKFDAMLEGVNSVGRL
PDPVGSCSLSRKLDDGLQLFRVACPIGVICIIFESRPEAAVQIASLSIKS
ANAVILKGGKEAEKSNAVLVQTIRSALQASNVPEDAVQLVATREEVRELL
DQTNYIDLIIPRGSNSLVRFISENTKIPVMGHADGICSVYVDAEADPLKA
KNIVADAKAQYPAVCNAAETLLIHKDAVEEILPIIGQGLADAKVSLRADE
ASKEVLDRTTGLVVERSSPEDYRTEFLELKMAVKVVSSLSDAIDHINKHG
SGHTDCIVTENESSAQKFLAMVDSAGVYHNASTRFADGFRYGFGAEVGVS
THRTHARGPVGLEGLLIYKYKLKGGGHIVAPYASGEKRFKHEDTPDVLPL
LDT*

spliced messenger RNA

>Gcaud2079.t1 ID=Gcaud2079.t1|Name=Gcaud2079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGTTCTCAAACATCGAAACCCTCTGCAATCGAGGCGCTTGCACT
TCGCGCCAGAAATGCGTCGCGGGCAATGCTTTCGCTAAGTACATCAGACA
GAAATAACGCTTTGGAGGCTGTGCACGATCATCTACTACACGCGAAGGAT
GCAATTCTCAATGCCAATGAAACTGATAAGAAGGCAGCTCAAGATCTGCT
TGCGAAAGGATCCCTTACCtcagcctcggtgaaaaggcttgatctgggag
gcaagaagtttgacgctatgctagaaggtgttaattctgttggtcgcttg
ccagatcccgttggatcatgctccctttctcgtaagctcgatgacggcct
tcaactgtttcgtgtcgcgtgtccaattggagttatctgcattatattcg
agtctcgcccagaggcagcagtgcagattgcgtcactctctataaagagt
gccaatgcggtcattctcaagggcggcaaagaagctgagaaaagcaacgc
agtacttgtgcaaacaattcgaagtgcgctacaagcttcaaatgttccgg
aggatgcggtacaactagtagccactcgagaagaagttcgagaactactg
gaccaaacaaattatatagatcttatcattccacgagggtcaaacagctt
ggtgagattcatcagtgaaaacactaagatccctgtcatgggccatgctg
acggaatttgttccgtttacgttgatgcagaggcagatcctctaaaagcg
aagaatatcgtggcggacgcgaaggcacaatacccagcagtatgcaatgc
agctgaaactttgcttattcacaaagatgcagtggaggagatccttccta
taattggacagggactggcagacgcaaaagtaagcttacgggcagatgaa
gcgtctaaagaagtactggacagaactacaggtctagttgtggagcgttc
ttctccggaagactacaggacagagtttctagagctgaagatggcggtaa
aagttgttagctctttgtcagatgccatcgaccatattaacaaacatggt
agcggacacacagattgcattgttacagagaacgagtCTTCTGCGCAGAA
GTTTTTGgcaatggtggactctgcaggagtatatcacaatgcttcaacga
ggtttgcagatggatttcgatacggatttggagcggaggtcggagtaagc
acccatagaacgcatgcacgaggtcccgttggtcttgaggggctcctgat
atacaagtacaagctgaaggggggcggtcatattgtcgccccctatgcca
gtggtgaaaaacgattcaagcatgaagatacgccagatgtcctccctctg
ttagacacctga

protein sequence of Gcaud2079.t1

>Gcaud2079.t1 ID=Gcaud2079.t1|Name=Gcaud2079.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MNGSQTSKPSAIEALALRARNASRAMLSLSTSDRNNALEAVHDHLLHAKD
AILNANETDKKAAQDLLAKGSLTSASVKRLDLGGKKFDAMLEGVNSVGRL
PDPVGSCSLSRKLDDGLQLFRVACPIGVICIIFESRPEAAVQIASLSIKS
ANAVILKGGKEAEKSNAVLVQTIRSALQASNVPEDAVQLVATREEVRELL
DQTNYIDLIIPRGSNSLVRFISENTKIPVMGHADGICSVYVDAEADPLKA
KNIVADAKAQYPAVCNAAETLLIHKDAVEEILPIIGQGLADAKVSLRADE
ASKEVLDRTTGLVVERSSPEDYRTEFLELKMAVKVVSSLSDAIDHINKHG
SGHTDCIVTENESSAQKFLAMVDSAGVYHNASTRFADGFRYGFGAEVGVS
THRTHARGPVGLEGLLIYKYKLKGGGHIVAPYASGEKRFKHEDTPDVLPL
LDT*

mRNA from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2079.t1 ID=Gcaud2079.t1|Name=Gcaud2079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+ (Gracilaria caudata M_176_S67 male)
ATGAACGGTTCTCAAACATCGAAACCCTCTGCAATCGAGGCGCTTGCACT
TCGCGCCAGAAATGCGTCGCGGGCAATGCTTTCGCTAAGTACATCAGACA
GAAATAACGCTTTGGAGGCTGTGCACGATCATCTACTACACGCGAAGGAT
GCAATTCTCAATGCCAATGAAACTGATAAGAAGGCAGCTCAAGATCTGCT
TGCGAAAGGATCCCTTACCtcagcctcggtgaaaaggcttgatctgggag
gcaagaagtttgacgctatgctagaaggtgttaattctgttggtcgcttg
ccagatcccgttggatcatgctccctttctcgtaagctcgatgacggcct
tcaactgtttcgtgtcgcgtgtccaattggagttatctgcattatattcg
agtctcgcccagaggcagcagtgcagattgcgtcactctctataaagagt
gccaatgcggtcattctcaagggcggcaaagaagctgagaaaagcaacgc
agtacttgtgcaaacaattcgaagtgcgctacaagcttcaaatgttccgg
aggatgcggtacaactagtagccactcgagaagaagttcgagaactactg
gaccaaacaaattatatagatcttatcattccacgagggtcaaacagctt
ggtgagattcatcagtgaaaacactaagatccctgtcatgggccatgctg
acggaatttgttccgtttacgttgatgcagaggcagatcctctaaaagcg
aagaatatcgtggcggacgcgaaggcacaatacccagcagtatgcaatgc
agctgaaactttgcttattcacaaagatgcagtggaggagatccttccta
taattggacagggactggcagacgcaaaagtaagcttacgggcagatgaa
gcgtctaaagaagtactggacagaactacaggtctagttgtggagcgttc
ttctccggaagactacaggacagagtttctagagctgaagatggcggtaa
aagttgttagctctttgtcagatgccatcgaccatattaacaaacatggt
agcggacacacagattgcattgttacagagaacgagtCTTCTGCGCAGAA
GTTTTTGgcaatggtggactctgcaggagtatatcacaatgcttcaacga
ggtttgcagatggatttcgatacggatttggagcggaggtcggagtaagc
acccatagaacgcatgcacgaggtcccgttggtcttgaggggctcctgat
atacaagtacaagctgaaggggggcggtcatattgtcgccccctatgcca
gtggtgaaaaacgattcaagcatgaagatacgccagatgtcctccctctg
ttagacacctga

Coding sequence (CDS) from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+

>Gcaud2079.t1 ID=Gcaud2079.t1|Name=Gcaud2079.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:20653..22014+ (Gracilaria caudata M_176_S67 male)
ATGAACGGTTCTCAAACATCGAAACCCTCTGCAATCGAGGCGCTTGCACT
TCGCGCCAGAAATGCGTCGCGGGCAATGCTTTCGCTAAGTACATCAGACA
GAAATAACGCTTTGGAGGCTGTGCACGATCATCTACTACACGCGAAGGAT
GCAATTCTCAATGCCAATGAAACTGATAAGAAGGCAGCTCAAGATCTGCT
TGCGAAAGGATCCCTTACCtcagcctcggtgaaaaggcttgatctgggag
gcaagaagtttgacgctatgctagaaggtgttaattctgttggtcgcttg
ccagatcccgttggatcatgctccctttctcgtaagctcgatgacggcct
tcaactgtttcgtgtcgcgtgtccaattggagttatctgcattatattcg
agtctcgcccagaggcagcagtgcagattgcgtcactctctataaagagt
gccaatgcggtcattctcaagggcggcaaagaagctgagaaaagcaacgc
agtacttgtgcaaacaattcgaagtgcgctacaagcttcaaatgttccgg
aggatgcggtacaactagtagccactcgagaagaagttcgagaactactg
gaccaaacaaattatatagatcttatcattccacgagggtcaaacagctt
ggtgagattcatcagtgaaaacactaagatccctgtcatgggccatgctg
acggaatttgttccgtttacgttgatgcagaggcagatcctctaaaagcg
aagaatatcgtggcggacgcgaaggcacaatacccagcagtatgcaatgc
agctgaaactttgcttattcacaaagatgcagtggaggagatccttccta
taattggacagggactggcagacgcaaaagtaagcttacgggcagatgaa
gcgtctaaagaagtactggacagaactacaggtctagttgtggagcgttc
ttctccggaagactacaggacagagtttctagagctgaagatggcggtaa
aagttgttagctctttgtcagatgccatcgaccatattaacaaacatggt
agcggacacacagattgcattgttacagagaacgagtCTTCTGCGCAGAA
GTTTTTGgcaatggtggactctgcaggagtatatcacaatgcttcaacga
ggtttgcagatggatttcgatacggatttggagcggaggtcggagtaagc
acccatagaacgcatgcacgaggtcccgttggtcttgaggggctcctgat
atacaagtacaagctgaaggggggcggtcatattgtcgccccctatgcca
gtggtgaaaaacgattcaagcatgaagatacgccagatgtcctccctctg
ttagacacctga