Gcaud8484.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8484.t1
Unique NameGcaud8484.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1141_length_13362_cov_4.300354contigNODE_1141_length_13362_cov_4.300354:2544..3584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue2.54e-37
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8484Gcaud8484Gracilaria caudata M_176_S67 malegeneNODE_1141_length_13362_cov_4.300354 2544..3584 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8484.t1.stop1Gcaud8484.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1141_length_13362_cov_4.300354 2544..2546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8484.t1.CDS1Gcaud8484.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1141_length_13362_cov_4.300354 2544..3584 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8484.t1.exon1Gcaud8484.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1141_length_13362_cov_4.300354 2544..3584 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8484.t1.start1Gcaud8484.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1141_length_13362_cov_4.300354 3582..3584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8484.t1Gcaud8484.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1141_length_13362_cov_4.300354 2544..3584 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8484.t1 ID=Gcaud8484.t1|Name=Gcaud8484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MRALYDRDNYYALHFDPKISASDARQKLEELRNTLQASGISYRHENIVVL
KPEIITYRGITMTLNFLTGAEKLLSLGEWDFFINLSGADFPIASQKIMKK
LLYRTRNANFVEWKPRRTWASYANRRLGHFYIDTGLVTTNSENGSYLTGH
GNYEIDAPDESAHLRNPMADHVDFTIAKSSGWFILCRRFTKFLLRNSQSK
KLLIALAYSDASDEHYFGSMLWNSRFRDTVIDSNMRHIFFVAPNGSFALG
ADGKRRRQHPFWVDELDEDGRELMFWPQIWNEPAFFTRKIRGMNRFCERV
EREMIGIGDSVDGARVAEYERTLTKSFSAHAEPFLEKTIGDDDEED*
back to top

spliced messenger RNA

>Gcaud8484.t1 ID=Gcaud8484.t1|Name=Gcaud8484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:2544..3584- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCGTTATATGATCGAGACAACTACTACGCTCTTCACTTTGACCC
AAAAATCTCTGCATCAGACGCGAGGCAAAAACTAGAAGAACTAAGGAACA
CTCTGCAGGCTTCGGGCATATCATATAGACATGAGAATATTGTTGTCCTC
AAGCCAGAAATCATTACTTATAGAGGGATAACAATGACGCTCAACTTTCT
CACGGGTGCAGAGAAGCTGTTGTCTCTGGGTGAATGGGACTTTTTCATCA
ATCTCTCCGGTGCAGACTTTCCGATAGCATCTCAAAAGATAATGAAGAAA
TTGTTGTATCGAACACGGAACGCCAACTTCGTTGAGTGGAAGCCCCGTCG
AACTTGGGCATCTTATGCAAATCGACGACTTGGCCACTTTTATATTGACA
CGGGTCTAGTGACAACGAATTCAGAGAACGGAAGTTATCTCACTGGACAT
GGTAATTATGAAATTGATGCACCAGACGAGAGTGCTCATTTGCGGAATCC
AATGGCGGACCATGTGGATTTCACGATAGCAAAGTCCTCAGGGTGGTTCA
TTCTATGCAGAAGATTTACGAAGTTCTTGCTGAGGAACTCACAGTCGAAG
AAACTTCTGATTGCTTTGGCGTATTCCGATGCATCAGACGAGCATTACTT
TGGCAGCATGTTATGGAATAGTCGTTTTCGAGACACCGTCATAGATAGCA
ATATGAGACACATATTCTTTGTGGCGCCGAATGGTAGTTTTGCGCTTGGT
GCGGATGGTAAGAGACGGAGACAACACCCCTTCTGGGTGGACGAGTTGGA
CGAGGACGGGAGGGAGTTGATGTTTTGGCCGCAGATATGGAATGAGCCTG
CATTCTTCACACGTAAGATTAGAGGGATGAATAGGTTTTGTGAGCGCGTG
GAGAGGGAAATGATAGGAATCGGGGATTCCGTAGACGGGGCAAGAGTTGC
AGAATATGAAAGAACTTTGACCAAGTCGTTTTCCGCGCATGCGGAGCCTT
TCTTGGAGAAGACTATCGGGGATGATGACGAAGAAGATTAG
back to top

protein sequence of Gcaud8484.t1

>Gcaud8484.t1 ID=Gcaud8484.t1|Name=Gcaud8484.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MRALYDRDNYYALHFDPKISASDARQKLEELRNTLQASGISYRHENIVVL
KPEIITYRGITMTLNFLTGAEKLLSLGEWDFFINLSGADFPIASQKIMKK
LLYRTRNANFVEWKPRRTWASYANRRLGHFYIDTGLVTTNSENGSYLTGH
GNYEIDAPDESAHLRNPMADHVDFTIAKSSGWFILCRRFTKFLLRNSQSK
KLLIALAYSDASDEHYFGSMLWNSRFRDTVIDSNMRHIFFVAPNGSFALG
ADGKRRRQHPFWVDELDEDGRELMFWPQIWNEPAFFTRKIRGMNRFCERV
EREMIGIGDSVDGARVAEYERTLTKSFSAHAEPFLEKTIGDDDEED*
back to top

mRNA from alignment at NODE_1141_length_13362_cov_4.300354:2544..3584-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8484.t1 ID=Gcaud8484.t1|Name=Gcaud8484.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:2544..3584- (Gracilaria caudata M_176_S67 male)
ATGCGTGCGTTATATGATCGAGACAACTACTACGCTCTTCACTTTGACCC
AAAAATCTCTGCATCAGACGCGAGGCAAAAACTAGAAGAACTAAGGAACA
CTCTGCAGGCTTCGGGCATATCATATAGACATGAGAATATTGTTGTCCTC
AAGCCAGAAATCATTACTTATAGAGGGATAACAATGACGCTCAACTTTCT
CACGGGTGCAGAGAAGCTGTTGTCTCTGGGTGAATGGGACTTTTTCATCA
ATCTCTCCGGTGCAGACTTTCCGATAGCATCTCAAAAGATAATGAAGAAA
TTGTTGTATCGAACACGGAACGCCAACTTCGTTGAGTGGAAGCCCCGTCG
AACTTGGGCATCTTATGCAAATCGACGACTTGGCCACTTTTATATTGACA
CGGGTCTAGTGACAACGAATTCAGAGAACGGAAGTTATCTCACTGGACAT
GGTAATTATGAAATTGATGCACCAGACGAGAGTGCTCATTTGCGGAATCC
AATGGCGGACCATGTGGATTTCACGATAGCAAAGTCCTCAGGGTGGTTCA
TTCTATGCAGAAGATTTACGAAGTTCTTGCTGAGGAACTCACAGTCGAAG
AAACTTCTGATTGCTTTGGCGTATTCCGATGCATCAGACGAGCATTACTT
TGGCAGCATGTTATGGAATAGTCGTTTTCGAGACACCGTCATAGATAGCA
ATATGAGACACATATTCTTTGTGGCGCCGAATGGTAGTTTTGCGCTTGGT
GCGGATGGTAAGAGACGGAGACAACACCCCTTCTGGGTGGACGAGTTGGA
CGAGGACGGGAGGGAGTTGATGTTTTGGCCGCAGATATGGAATGAGCCTG
CATTCTTCACACGTAAGATTAGAGGGATGAATAGGTTTTGTGAGCGCGTG
GAGAGGGAAATGATAGGAATCGGGGATTCCGTAGACGGGGCAAGAGTTGC
AGAATATGAAAGAACTTTGACCAAGTCGTTTTCCGCGCATGCGGAGCCTT
TCTTGGAGAAGACTATCGGGGATGATGACGAAGAAGATTAG
back to top

Coding sequence (CDS) from alignment at NODE_1141_length_13362_cov_4.300354:2544..3584-

>Gcaud8484.t1 ID=Gcaud8484.t1|Name=Gcaud8484.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_1141_length_13362_cov_4.300354:2544..3584- (Gracilaria caudata M_176_S67 male)
ATGCGTGCGTTATATGATCGAGACAACTACTACGCTCTTCACTTTGACCC
AAAAATCTCTGCATCAGACGCGAGGCAAAAACTAGAAGAACTAAGGAACA
CTCTGCAGGCTTCGGGCATATCATATAGACATGAGAATATTGTTGTCCTC
AAGCCAGAAATCATTACTTATAGAGGGATAACAATGACGCTCAACTTTCT
CACGGGTGCAGAGAAGCTGTTGTCTCTGGGTGAATGGGACTTTTTCATCA
ATCTCTCCGGTGCAGACTTTCCGATAGCATCTCAAAAGATAATGAAGAAA
TTGTTGTATCGAACACGGAACGCCAACTTCGTTGAGTGGAAGCCCCGTCG
AACTTGGGCATCTTATGCAAATCGACGACTTGGCCACTTTTATATTGACA
CGGGTCTAGTGACAACGAATTCAGAGAACGGAAGTTATCTCACTGGACAT
GGTAATTATGAAATTGATGCACCAGACGAGAGTGCTCATTTGCGGAATCC
AATGGCGGACCATGTGGATTTCACGATAGCAAAGTCCTCAGGGTGGTTCA
TTCTATGCAGAAGATTTACGAAGTTCTTGCTGAGGAACTCACAGTCGAAG
AAACTTCTGATTGCTTTGGCGTATTCCGATGCATCAGACGAGCATTACTT
TGGCAGCATGTTATGGAATAGTCGTTTTCGAGACACCGTCATAGATAGCA
ATATGAGACACATATTCTTTGTGGCGCCGAATGGTAGTTTTGCGCTTGGT
GCGGATGGTAAGAGACGGAGACAACACCCCTTCTGGGTGGACGAGTTGGA
CGAGGACGGGAGGGAGTTGATGTTTTGGCCGCAGATATGGAATGAGCCTG
CATTCTTCACACGTAAGATTAGAGGGATGAATAGGTTTTGTGAGCGCGTG
GAGAGGGAAATGATAGGAATCGGGGATTCCGTAGACGGGGCAAGAGTTGC
AGAATATGAAAGAACTTTGACCAAGTCGTTTTCCGCGCATGCGGAGCCTT
TCTTGGAGAAGACTATCGGGGATGATGACGAAGAAGATTAG
back to top