Gcaud7308.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7308.t1
Unique NameGcaud7308.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1012_length_15067_cov_4.899907contigNODE_1012_length_15067_cov_4.899907:11513..12149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7308Gcaud7308Gracilaria caudata M_176_S67 malegeneNODE_1012_length_15067_cov_4.899907 11513..12149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1Gcaud7308.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1012_length_15067_cov_4.899907 11513..12149 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1.stop1Gcaud7308.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1012_length_15067_cov_4.899907 11513..11515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1.CDS1Gcaud7308.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1012_length_15067_cov_4.899907 11513..11517 -
Gcaud7308.t1.CDS2Gcaud7308.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1012_length_15067_cov_4.899907 11638..11725 -
Gcaud7308.t1.CDS3Gcaud7308.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1012_length_15067_cov_4.899907 11914..12021 -
Gcaud7308.t1.CDS4Gcaud7308.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_1012_length_15067_cov_4.899907 12120..12149 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1.exon1Gcaud7308.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1012_length_15067_cov_4.899907 11513..11517 -
Gcaud7308.t1.exon2Gcaud7308.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1012_length_15067_cov_4.899907 11638..11725 -
Gcaud7308.t1.exon3Gcaud7308.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1012_length_15067_cov_4.899907 11914..12021 -
Gcaud7308.t1.exon4Gcaud7308.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_1012_length_15067_cov_4.899907 12120..12149 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1.intron1Gcaud7308.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1012_length_15067_cov_4.899907 11518..11637 -
Gcaud7308.t1.intron2Gcaud7308.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1012_length_15067_cov_4.899907 11726..11913 -
Gcaud7308.t1.intron3Gcaud7308.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_1012_length_15067_cov_4.899907 12022..12119 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7308.t1.start1Gcaud7308.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1012_length_15067_cov_4.899907 12147..12149 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7308.t1 ID=Gcaud7308.t1|Name=Gcaud7308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=77bp
MNLFCSSTHKLTSRTACHRNFPLRVATTLTAELCAVTIVNIEFPRRPISN
RKIGVVVMSFLELHLYIDSPEERKPE*
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spliced messenger RNA

>Gcaud7308.t1 ID=Gcaud7308.t1|Name=Gcaud7308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp|location=Sequence derived from alignment at NODE_1012_length_15067_cov_4.899907:11513..12149- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTATTCTGTTCAAGTACTCACAAGCTCACATCCCGTACCGCCTG
CCATCGAAACTTCCCTCTCCGCGTTGCCACCACCCTCACTGCTGAGTTGT
GTGCTGTCACCATCGTTAACATTGAGTTTCCCCGTAGGCCCATTAGCAAT
CGCAAAATTGGAGTCGTTGTAATGTCGTTCTTGGAACTGCATCTCTACAT
CGACAGTCCCGAAGAAAGAAAACCCGAGTGA
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protein sequence of Gcaud7308.t1

>Gcaud7308.t1 ID=Gcaud7308.t1|Name=Gcaud7308.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=77bp
MNLFCSSTHKLTSRTACHRNFPLRVATTLTAELCAVTIVNIEFPRRPISN
RKIGVVVMSFLELHLYIDSPEERKPE*
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mRNA from alignment at NODE_1012_length_15067_cov_4.899907:11513..12149-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7308.t1 ID=Gcaud7308.t1|Name=Gcaud7308.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=637bp|location=Sequence derived from alignment at NODE_1012_length_15067_cov_4.899907:11513..12149- (Gracilaria caudata M_176_S67 male)
ATGAACCTATTCTGTTCAAGTACTCACAAGGTACGAAGGTAATTTAAATG
TCAACGATGGTTGTCGCAGCTGCTTTTTACTTCGTCGGCCGTTTATACTT
AACTGTGAATTGTTTCATGCCCCGCAAGCTCACATCCCGTACCGCCTGCC
ATCGAAACTTCCCTCTCCGCGTTGCCACCACCCTCACTGCTGAGTTGTGT
GCTGTCACCATCGTTAACATTGAGTTTCCCCGTAGGGTGATATGAGCGAG
CTCGCGTGTTACACTCGATGGCAACCCCACCACGATTTTCACACCTCTTG
AACTAACTTTGGACGCGCATTGCGCAATGCTGGTGCTGTGCTCTTGATCC
ACCTTGATCAAGCCCTCAGTCATTAGATTTAGCATCCATAATGCGGGTTT
CTCACCAAAATGCCCGCTCAATAGCCCATTAGCAATCGCAAAATTGGAGT
CGTTGTAATGTCGTTCTTGGAACTGCATCTCTACATCGACAGTCCCGAAG
AAAGAAAACCCGGTAAGTGTCTTCAGCGCATTGGAGAAAACTTCAAATCC
TCTGCTACTGTTCAGCTGTCCGTTGCTGACTGTAACACGGTACAATACTC
CGTCGTGCCAAAACATTTTGCGAGTGCCACAGAGTGA
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Coding sequence (CDS) from alignment at NODE_1012_length_15067_cov_4.899907:11513..12149-

>Gcaud7308.t1 ID=Gcaud7308.t1|Name=Gcaud7308.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=231bp|location=Sequence derived from alignment at NODE_1012_length_15067_cov_4.899907:11513..12149- (Gracilaria caudata M_176_S67 male)
ATGAACCTATTCTGTTCAAGTACTCACAAGCTCACATCCCGTACCGCCTG
CCATCGAAACTTCCCTCTCCGCGTTGCCACCACCCTCACTGCTGAGTTGT
GTGCTGTCACCATCGTTAACATTGAGTTTCCCCGTAGGCCCATTAGCAAT
CGCAAAATTGGAGTCGTTGTAATGTCGTTCTTGGAACTGCATCTCTACAT
CGACAGTCCCGAAGAAAGAAAACCCGAGTGA
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