Gcaud2219.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2219.t1
Unique Name	Gcaud2219.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_492_length_23814_cov_5.019981	contig	NODE_492_length_23814_cov_5.019981:20846..21760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	357808.RoseRS_4601
PFAMs	RmlD_sub_bind
Max annot lvl	32061\|Chloroflexia
KEGG rclass	RC00182
KEGG ko	ko:K00067
KEGG Reaction	R02777
KEGG Pathway	ko00521,ko00523,ko01130,map00521,map00523,map01130
KEGG Module	M00793
Evalue	3.49e-26
EggNOG OGs	COG1091@1\|root,COG1091@2\|Bacteria,2G9A2@200795\|Chloroflexi,375MR@32061\|Chloroflexia
EC	1.1.1.133
Description	PFAM NAD-dependent epimerase dehydratase
COG category	M
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2219	Gcaud2219	Gracilaria caudata M_176_S67 male	gene	NODE_492_length_23814_cov_5.019981 20846..21760 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2219.t1.start1	Gcaud2219.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_492_length_23814_cov_5.019981 20846..20848 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2219.t1.CDS1	Gcaud2219.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_492_length_23814_cov_5.019981 20846..21760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2219.t1.exon1	Gcaud2219.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_492_length_23814_cov_5.019981 20846..21760 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2219.t1.stop1	Gcaud2219.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_492_length_23814_cov_5.019981 21758..21760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2219.t1	Gcaud2219.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_492_length_23814_cov_5.019981 20846..21760 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+
coding sequence from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+

mRNA sequence

>Gcaud2219.t1 ID=Gcaud2219.t1|Name=Gcaud2219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=305bp
MGVLVIIGATGELGSQTVLAASADDATGWPGDIIATYNNSPPRLGLPRVK
WIKLDCSDHKAVRSLVVSLSELDAVVYCAVPKHGGAAGKGGGRIRAGIVD
DVLNCAEAVALIGARFVAVSTDLVFDGRIPEGECYDEASKTCPPNPYGVY
KQQMEQQLLALSGKIVIARTSLILTVDEPPYGKGIQFVVDCINGEKGEIE
LFTDELRNMSFSDDLGRALVELAKPQCAHVGLIHMVSDEVTNRWELAKLL
AKRLGLEDKIGKFAKSGLSAESGLNRPLNCALSTKLKNKVLNTHIDGISE
RLSK*

spliced messenger RNA

>Gcaud2219.t1 ID=Gcaud2219.t1|Name=Gcaud2219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=915bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGCTTGTCATCATCGGCGCCACCGGCGAGCTCGGCAGCCAGAC
CGTGCTCGCCGCCTCCGCAGATGACGCCACCGGCTGGCCCGGTGATATCA
TCGCCACCTACAACAACAGCCCGCCGCGCCTGGGCCTACCGCGCGTCAAG
TGGATCAAGCTCGACTGCTCCGATCACAAGGCGGTGCGCTCGCTGGTGGT
GTCGCTCAGCGAGCTTGACGCCGTCGTGTACTGCGCTGTGCCCAAGCATG
GAGGCGCTGCCGGTAAGGGCGGCGGGCGCATTCGCGCTGGCATTGTCGAC
GATGTGCTAAATTGTGCTGAGGCTGTTGCACTGATTGGCGCTAGATTCGT
GGCCGTTTCGACTGACCTCGTATTTGATGGGCGTATTCCAGAGGGAGAGT
GCTATGATGAGGCCAGTAAGACATGTCCACCCAATCCATATGGCGTGTAC
AAGCAACAAATGGAGCAGCAGTTGTTGGCGCTCTCCGGAAAGATTGTTAT
CGCGCGTACTAGCTTGATTCTTACCGTGGATGAACCGCCATACGGAAAGG
GCATTCAATTCGTGGTGGACTGTATCAATGGCGAGAAGGGTGAGATCGAA
CTCTTCACTGATGAGTTGCGCAATATGTCCTTCTCAGATGATCTTGGACG
CGCACTGGTGGAGCTTGCGAAGCCGCAATGTGCACATGTTGGCCTCATTC
ATATGGTCAGTGATGAGGTCACCAATAGATGGGAGCTTGCAAAACTGCTC
GCAAAGCGTCTCGGCCTCGAGGACAAGATTGGAAAGTTCGCTAAGAGCGG
GCTGTCGGCGGAGAGCGGTCTTAACCGCCCGCTTAACTGCGCTCTATCTA
CCAAGTTGAAGAACAAGGTTCTCAACACACACATCGATGGAATCTCTGAA
CGTCTGTCTAAATAA

protein sequence of Gcaud2219.t1

>Gcaud2219.t1 ID=Gcaud2219.t1|Name=Gcaud2219.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=305bp
MGVLVIIGATGELGSQTVLAASADDATGWPGDIIATYNNSPPRLGLPRVK
WIKLDCSDHKAVRSLVVSLSELDAVVYCAVPKHGGAAGKGGGRIRAGIVD
DVLNCAEAVALIGARFVAVSTDLVFDGRIPEGECYDEASKTCPPNPYGVY
KQQMEQQLLALSGKIVIARTSLILTVDEPPYGKGIQFVVDCINGEKGEIE
LFTDELRNMSFSDDLGRALVELAKPQCAHVGLIHMVSDEVTNRWELAKLL
AKRLGLEDKIGKFAKSGLSAESGLNRPLNCALSTKLKNKVLNTHIDGISE
RLSK*

mRNA from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2219.t1 ID=Gcaud2219.t1|Name=Gcaud2219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=915bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+ (Gracilaria caudata M_176_S67 male)
ATGGGCGTGCTTGTCATCATCGGCGCCACCGGCGAGCTCGGCAGCCAGAC
CGTGCTCGCCGCCTCCGCAGATGACGCCACCGGCTGGCCCGGTGATATCA
TCGCCACCTACAACAACAGCCCGCCGCGCCTGGGCCTACCGCGCGTCAAG
TGGATCAAGCTCGACTGCTCCGATCACAAGGCGGTGCGCTCGCTGGTGGT
GTCGCTCAGCGAGCTTGACGCCGTCGTGTACTGCGCTGTGCCCAAGCATG
GAGGCGCTGCCGGTAAGGGCGGCGGGCGCATTCGCGCTGGCATTGTCGAC
GATGTGCTAAATTGTGCTGAGGCTGTTGCACTGATTGGCGCTAGATTCGT
GGCCGTTTCGACTGACCTCGTATTTGATGGGCGTATTCCAGAGGGAGAGT
GCTATGATGAGGCCAGTAAGACATGTCCACCCAATCCATATGGCGTGTAC
AAGCAACAAATGGAGCAGCAGTTGTTGGCGCTCTCCGGAAAGATTGTTAT
CGCGCGTACTAGCTTGATTCTTACCGTGGATGAACCGCCATACGGAAAGG
GCATTCAATTCGTGGTGGACTGTATCAATGGCGAGAAGGGTGAGATCGAA
CTCTTCACTGATGAGTTGCGCAATATGTCCTTCTCAGATGATCTTGGACG
CGCACTGGTGGAGCTTGCGAAGCCGCAATGTGCACATGTTGGCCTCATTC
ATATGGTCAGTGATGAGGTCACCAATAGATGGGAGCTTGCAAAACTGCTC
GCAAAGCGTCTCGGCCTCGAGGACAAGATTGGAAAGTTCGCTAAGAGCGG
GCTGTCGGCGGAGAGCGGTCTTAACCGCCCGCTTAACTGCGCTCTATCTA
CCAAGTTGAAGAACAAGGTTCTCAACACACACATCGATGGAATCTCTGAA
CGTCTGTCTAAATAA

Coding sequence (CDS) from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+

>Gcaud2219.t1 ID=Gcaud2219.t1|Name=Gcaud2219.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=915bp|location=Sequence derived from alignment at NODE_492_length_23814_cov_5.019981:20846..21760+ (Gracilaria caudata M_176_S67 male)
ATGGGCGTGCTTGTCATCATCGGCGCCACCGGCGAGCTCGGCAGCCAGAC
CGTGCTCGCCGCCTCCGCAGATGACGCCACCGGCTGGCCCGGTGATATCA
TCGCCACCTACAACAACAGCCCGCCGCGCCTGGGCCTACCGCGCGTCAAG
TGGATCAAGCTCGACTGCTCCGATCACAAGGCGGTGCGCTCGCTGGTGGT
GTCGCTCAGCGAGCTTGACGCCGTCGTGTACTGCGCTGTGCCCAAGCATG
GAGGCGCTGCCGGTAAGGGCGGCGGGCGCATTCGCGCTGGCATTGTCGAC
GATGTGCTAAATTGTGCTGAGGCTGTTGCACTGATTGGCGCTAGATTCGT
GGCCGTTTCGACTGACCTCGTATTTGATGGGCGTATTCCAGAGGGAGAGT
GCTATGATGAGGCCAGTAAGACATGTCCACCCAATCCATATGGCGTGTAC
AAGCAACAAATGGAGCAGCAGTTGTTGGCGCTCTCCGGAAAGATTGTTAT
CGCGCGTACTAGCTTGATTCTTACCGTGGATGAACCGCCATACGGAAAGG
GCATTCAATTCGTGGTGGACTGTATCAATGGCGAGAAGGGTGAGATCGAA
CTCTTCACTGATGAGTTGCGCAATATGTCCTTCTCAGATGATCTTGGACG
CGCACTGGTGGAGCTTGCGAAGCCGCAATGTGCACATGTTGGCCTCATTC
ATATGGTCAGTGATGAGGTCACCAATAGATGGGAGCTTGCAAAACTGCTC
GCAAAGCGTCTCGGCCTCGAGGACAAGATTGGAAAGTTCGCTAAGAGCGG
GCTGTCGGCGGAGAGCGGTCTTAACCGCCCGCTTAACTGCGCTCTATCTA
CCAAGTTGAAGAACAAGGTTCTCAACACACACATCGATGGAATCTCTGAA
CGTCTGTCTAAATAA