Gcaud2335.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2335.t1
Unique NameGcaud2335.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length196
Homology
BLAST of Gcaud2335.t1 vs. uniprot
Match: R7QCS4_CHOCR (60S ribosomal protein L18a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCS4_CHOCR)

HSP 1 Score: 281 bits (720), Expect = 1.590e-94
Identity = 134/150 (89.33%), Postives = 146/150 (97.33%), Query Frame = 0
Query:    1 MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS 150
            MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEIL+VNEIHEK+IS VKNIGVWLRYKSRSDTVNMYKEYRDV++TGAVEQMYMEMSGRHRARWSSIQVLKV+E+ +EDVRRP T+QF++ DLKFPLPHTRP++
Sbjct:   13 MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILSVNEIHEKNISAVKNIGVWLRYKSRSDTVNMYKEYRDVTMTGAVEQMYMEMSGRHRARWSSIQVLKVQEVADEDVRRPNTLQFMETDLKFPLPHTRPRA 162          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A2V3J044_9FLOR (60S ribosomal protein L18a n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J044_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 5.110e-93
Identity = 135/150 (90.00%), Postives = 144/150 (96.00%), Query Frame = 0
Query:    1 MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS 150
            MVPGKGGSKP EETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEI EKD STVKNIG+WLRYKSRSDTVNM+KE+RDVSLTGAVEQMYMEMSGRHRARWSSIQVL+V+ I++EDVRRP TMQFLDPDLKFPLPH RP++
Sbjct:   13 MVPGKGGSKPGEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIFEKDPSTVKNIGIWLRYKSRSDTVNMFKEFRDVSLTGAVEQMYMEMSGRHRARWSSIQVLRVRIISDEDVRRPNTMQFLDPDLKFPLPHVRPRA 162          
BLAST of Gcaud2335.t1 vs. uniprot
Match: UPI001E1DC756 (60S ribosomal protein L18a-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DC756)

HSP 1 Score: 228 bits (581), Expect = 1.850e-73
Identity = 110/131 (83.97%), Postives = 119/131 (90.84%), Query Frame = 0
Query:   19 MRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQ 149
            MRIFAPN VVAKSRFWYFLRKLKRVKKANGEIL+VNEIHE DISTVKN GVWLRYKSRSDTVNMYKEYRD+++TGAVEQMYME+SGRHRARWSSIQVLKV E+ +  VRR  T+Q L  DLKFPLPHTRP+
Sbjct:   25 MRIFAPNEVVAKSRFWYFLRKLKRVKKANGEILSVNEIHESDISTVKNFGVWLRYKSRSDTVNMYKEYRDITMTGAVEQMYMELSGRHRARWSSIQVLKVAEVEDSAVRRDGTLQMLTKDLKFPLPHTRPR 155          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A7S0ZI05_9RHOD (60S ribosomal protein L18a n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI05_9RHOD)

HSP 1 Score: 202 bits (515), Expect = 2.730e-63
Identity = 97/137 (70.80%), Postives = 116/137 (84.67%), Query Frame = 0
Query:   11 DEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPD-LKFPLPHT 146
            D E  VYRM+IFAPN VVAKSRFW++L +L++VKKA+GEILAV EI E++  ++KN GVW+RYKSRSDTVNMY+EYRD  +TGAVEQMYMEMSG HRARWS+IQVLKV E+ +ED RRP TMQ  D + +KFPLPHT
Sbjct:   26 DPEPVVYRMKIFAPNQVVAKSRFWFYLGQLRKVKKASGEILAVAEIFEENPGSIKNFGVWIRYKSRSDTVNMYREYRDTHMTGAVEQMYMEMSGNHRARWSAIQVLKVLEVADEDCRRPRTMQMHDEENIKFPLPHT 162          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A7S0T4C8_9RHOD (60S ribosomal protein L18a n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4C8_9RHOD)

HSP 1 Score: 202 bits (513), Expect = 5.500e-63
Identity = 99/146 (67.81%), Postives = 119/146 (81.51%), Query Frame = 0
Query:    1 MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDP-DLKFPLPH 145
            +V  K  S+ + E  V+RM+IFA N VVAKSRFW++LR+L++VKKANGEILAV E+ EKD  T+KN GVWLRYKSRSDTVNMYKE+RD  +T AVEQMY+EMSG HRARWSSIQVLKV+E+  ED RR  T+Q LD  ++KFPLPH
Sbjct:   16 VVGRKQPSEAEPEPQVFRMKIFAQNTVVAKSRFWFYLRQLRKVKKANGEILAVEEVFEKDPGTIKNFGVWLRYKSRSDTVNMYKEFRDTHMTRAVEQMYLEMSGNHRARWSSIQVLKVQEVANEDCRRERTLQMLDESNIKFPLPH 161          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A7S1THG2_9RHOD (60S ribosomal protein L18a n=3 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THG2_9RHOD)

HSP 1 Score: 201 bits (511), Expect = 8.540e-63
Identity = 93/138 (67.39%), Postives = 115/138 (83.33%), Query Frame = 0
Query:   13 ETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS 150
            E  VYRM+IFAPN VVAKSRFW+F+ +LK VKKA+GE+++VNE+ EK    V+N G+WLRYKSRSD VNMYKEYRDV++TGAVEQMYMEMSGRHRARWSS+QVLKV  +  +D RRP T+QF +  L+FP+PH  P++
Sbjct:   21 EPEVYRMKIFAPNEVVAKSRFWFFVSQLKNVKKASGEVISVNELFEKRAGVVRNYGIWLRYKSRSDEVNMYKEYRDVTMTGAVEQMYMEMSGRHRARWSSVQVLKVVVVDAKDCRRPQTLQFHENKLRFPMPHKLPRA 158          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A5J4YWN7_PORPP (60S ribosomal protein L18a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWN7_PORPP)

HSP 1 Score: 194 bits (492), Expect = 8.190e-60
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 0
Query:    6 GGSKPDE---ETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPD-LKFPLPH 145
            G  KP E   E  VYRM+IFAPN VVAKSR+WY+LR+LK++KKA+GE+L V EI EKD  T+KN GVW+RYKSRSDTVNMY+EYRD  ++ AVEQMYMEMSG HRARWSSIQVLK +E+ +ED RR    Q  D D ++FPLPH
Sbjct:   17 GRKKPTETEPEQPVYRMKIFAPNQVVAKSRYWYYLRQLKKMKKASGEVLGVYEIFEKDPLTIKNYGVWIRYKSRSDTVNMYREYRDTKISRAVEQMYMEMSGNHRARWSSIQVLKAEEVKDEDCRREHITQMHDADSIRFPLPH 160          
BLAST of Gcaud2335.t1 vs. uniprot
Match: M2WQY2_GALSU (60S ribosomal protein L18a n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WQY2_GALSU)

HSP 1 Score: 192 bits (487), Expect = 3.760e-59
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 0
Query:   11 DEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS 150
            + E  +YR++IFAPN V AKSRFWYFLRKLKRVKK++GEIL ++EI EK  + VKN G+W+RYKSRSDT+NMY+EYRDV++ GAVEQMY +MSGRHRARWSSI VLK   +  +D RR    QF D  +KF LPH RP++
Sbjct:   20 EPEPPIYRLKIFAPNVVNAKSRFWYFLRKLKRVKKSSGEILNISEIFEKKSTQVKNYGIWIRYKSRSDTINMYREYRDVTVNGAVEQMYKDMSGRHRARWSSIWVLKAMPVAAKDCRRSKVTQFHDSKIKFALPHMRPRA 159          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A642VDR4_9ASCO (60S ribosomal protein L20 n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642VDR4_9ASCO)

HSP 1 Score: 186 bits (471), Expect = 9.140e-57
Identity = 90/145 (62.07%), Postives = 111/145 (76.55%), Query Frame = 0
Query:   11 DEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITE-EDVRRPLTMQFLDPDLKFPLPHTRPQSCRAF 154
            + E  +YRMRIFAPN VVAKSRFWYFL KL+R+KKA GEI+A+N+IHEK  + VKN G+W+RY SRS   NMY+EYRD++  GAVE +Y +M+ RHRARW SI +LKV EI + EDV+RP T Q L  +LKFPLPH  P+S   F
Sbjct:   22 EPEPKLYRMRIFAPNTVVAKSRFWYFLTKLRRIKKAAGEIVAINQIHEKRPTKVKNFGIWIRYHSRSGIHNMYREYRDLTRVGAVETLYQDMAARHRARWGSIHILKVVEIEKTEDVKRPYTRQLLAKNLKFPLPHRVPKSKSLF 166          
BLAST of Gcaud2335.t1 vs. uniprot
Match: A0A0L0HJP7_SPIPD (60S ribosomal protein L20 n=4 Tax=Spizellomycetales TaxID=34478 RepID=A0A0L0HJP7_SPIPD)

HSP 1 Score: 182 bits (463), Expect = 1.490e-55
Identity = 95/165 (57.58%), Postives = 117/165 (70.91%), Query Frame = 0
Query:    6 GGSKPDEETAV---YRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEILAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYMEMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPH--TRPQSCRAFSVIALLNNDAF 165
            G   P E+  V   YRMR+FAPN VVAKSRFWYFL+++ +VKKA+GEI+AVNEI EK   TVKN G+W+RY SRS T NMYKEYR+++ T AV   Y +M+ RHRAR+SSIQ++KV E+   DVRRP   Q L+P LKFPLPH  TRP S R   V + +    F
Sbjct:   11 GRRTPTEKEPVPKLYRMRLFAPNEVVAKSRFWYFLKQVNKVKKASGEIVAVNEIFEKKPLTVKNFGIWIRYDSRSGTHNMYKEYRELTRTDAVAACYQDMAARHRARFSSIQIIKVAEVKSADVRRPYIRQLLEPKLKFPLPHRVTRPASKRYRPVFSGVRPSTF 175          
The following BLAST results are available for this feature:
BLAST of Gcaud2335.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QCS4_CHOCR1.590e-9489.3360S ribosomal protein L18a n=1 Tax=Chondrus crispu... [more]
A0A2V3J044_9FLOR5.110e-9390.0060S ribosomal protein L18a n=1 Tax=Gracilariopsis ... [more]
UPI001E1DC7561.850e-7383.9760S ribosomal protein L18a-like n=1 Tax=Mercenaria... [more]
A0A7S0ZI05_9RHOD2.730e-6370.8060S ribosomal protein L18a n=1 Tax=Timspurckia oli... [more]
A0A7S0T4C8_9RHOD5.500e-6367.8160S ribosomal protein L18a n=2 Tax=Erythrolobus ma... [more]
A0A7S1THG2_9RHOD8.540e-6367.3960S ribosomal protein L18a n=3 Tax=Compsopogon cae... [more]
A0A5J4YWN7_PORPP8.190e-6066.6760S ribosomal protein L18a n=1 Tax=Porphyridium pu... [more]
M2WQY2_GALSU3.760e-5964.2960S ribosomal protein L18a n=1 Tax=Galdieria sulph... [more]
A0A642VDR4_9ASCO9.140e-5762.0760S ribosomal protein L20 n=1 Tax=Trichomonascus c... [more]
A0A0L0HJP7_SPIPD1.490e-5557.5860S ribosomal protein L20 n=4 Tax=Spizellomycetale... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.10coord: 3..60
e-value: 2.6E-25
score: 90.0
NoneNo IPR availableGENE3D3.10.20.10coord: 62..136
e-value: 6.8E-34
score: 118.0
NoneNo IPR availablePANTHERPTHR10052:SF160S RIBOSOMAL PROTEIN L18Acoord: 8..150
NoneNo IPR availableSUPERFAMILY160374RplX-likecoord: 62..136
IPR023573Ribosomal protein 50S-L18Ae/60S-L20/60S-L18APFAMPF01775Ribosomal_L18Acoord: 9..119
e-value: 1.7E-45
score: 154.0
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aPANTHERPTHR1005260S RIBOSOMAL PROTEIN L18Acoord: 8..150
IPR02887750S ribosomal protein L18Ae/60S ribosomal protein L20 and L18aHAMAPMF_00273Ribosomal_L18Aecoord: 1..59
score: 17.118021

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:2364..3147 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2335.t1Gcaud2335.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 2364..3147 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2335.t1 ID=Gcaud2335.t1|Name=Gcaud2335.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=196bp
MVPGKGGSKPDEETAVYRMRIFAPNPVVAKSRFWYFLRKLKRVKKANGEI
LAVNEIHEKDISTVKNIGVWLRYKSRSDTVNMYKEYRDVSLTGAVEQMYM
EMSGRHRARWSSIQVLKVKEITEEDVRRPLTMQFLDPDLKFPLPHTRPQS
CRAFSVIALLNNDAFDGRNALNTFSPCVLESFTQNCTTVQARDTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023573Ribosomal_L18a//L18Ae/LX
IPR02887750S_L18Ae/Ribosomal_L18a/L20