Gcaud2360.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2360.t1
Unique NameGcaud2360.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:59886..61106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702812.1
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue6.74e-181
EggNOG OGsCOG0673@1|root,2RTD3@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionOxidoreductase family, NAD-binding Rossmann fold
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2360Gcaud2360Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 59886..61106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2360.t1.stop1Gcaud2360.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 59886..59888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2360.t1.CDS1Gcaud2360.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 59886..61106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2360.t1.exon1Gcaud2360.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 59886..61106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2360.t1.start1Gcaud2360.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 61104..61106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2360.t1Gcaud2360.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 59886..61106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2360.t1 ID=Gcaud2360.t1|Name=Gcaud2360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=407bp
MTAFVPSSFASQWVRPSTAHPNSSHTSLRARSARHAAVTMSIPVPKESLK
AITPTDDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLAHGCQPFYDYHKLIEDPSVNAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GDPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARYLIGSEVEDV
YTLGAVNINPEIEEYGDVDTSIVTLRFKNGVIGSIDNSRQAVYGYDQRCE
VLGSGGSIHINNNYQNSAVISNSAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAAKKSFQERRPVSISEVDQPLPAEL
VGWDGQ*
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spliced messenger RNA

>Gcaud2360.t1 ID=Gcaud2360.t1|Name=Gcaud2360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:59886..61106- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCTTCGTGCCGTCCTCGTTCGCCTCGCAATGGGTCCGTCCGTC
TACTGCGCATCCGAACAGCTCGCATACCTCGCTGCGAGCACGCTCCGCAC
GCCATGCCGCCGTCACAATGTCTATTCCCGTGCCGAAGGAGTCCTTAAAG
GCCATCACACCCACTGATGACGAGCCTCGTCTCAACATCGGAATCATCGG
CGCGGGACGCATTGGCCAGGTGCACGCCGACAACATTACCTTCCGTCTGC
GCAATGCCAACCTCGTCGGCGTCTCTTCCGGTTCTAAGGTGCTTGCTGAG
CGTTGTTCCCTCGCCCACGGATGTCAGCCATTCTACGACTATCATAAGCT
CATCGAGGATCCTTCCGTTAACGCCGTTTGCATTTGCTCCGCATCCAATC
AGCACACCACGCAAATCATTGCCGCTGCGCGAGCTGGCAAGCACATTTTC
TGTGAAAAACCCATTGATACTTCTTTGGATGTCATTGACAAGGCCCTGGT
AGAGGTACGAAAGGCTGGCGTCAAGCTTCAAGTCGGTTTCAATCGGCGCT
TTGACCAGAACTATAGACGTGTGCGAAAAGCTATCGAAAACAACGAAATC
GGTGACCCTCAGATTATGCACATTGTCAGTCGCGATCCCTCTCCCCCACC
AATTGAGTACGTCAAGAATTCTGGAGGTATCTGGATGGACTGCAGTATTC
ACGACATGGATATGGCACGCTACCTCATCGGCTCTGAAGTGGAAGACGTC
TACACCCTGGGCGCAGTCAACATCAACCCCGAAATTGAAGAGTATGGCGA
CGTCGACACCAGTATCGTAACTCTTCGCTTCAAGAACGGTGTCATCGGTA
GTATTGACAACTCCCGTCAAGCTGTGTACGGTTATGATCAGCGATGTGAA
GTTCTTGGATCAGGCGGTTCCATCCACATCAACAATAACTACCAGAATTC
TGCTGTCATCTCCAACTCAGCAGCTGTGATGCGTGATTTACCGCTCAATT
TCTTCATGGATCGTTATACCGATTCATTCATCGTTGAGCTCAACGAATTC
TGTGATGCTGTGTTGCACGATAAACCTGTCCCTTGCACGGGACTTGACGG
ACGCGCGCCAGTCGTGATTGCGTTGGCTGCTAAGAAATCATTCCAGGAAA
GACGACCGGTTAGCATTTCAGAAGTAGATCAGCCGCTTCCCGCAGAACTC
GTCGGATGGGATGGGCAGTAA
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protein sequence of Gcaud2360.t1

>Gcaud2360.t1 ID=Gcaud2360.t1|Name=Gcaud2360.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=407bp
MTAFVPSSFASQWVRPSTAHPNSSHTSLRARSARHAAVTMSIPVPKESLK
AITPTDDEPRLNIGIIGAGRIGQVHADNITFRLRNANLVGVSSGSKVLAE
RCSLAHGCQPFYDYHKLIEDPSVNAVCICSASNQHTTQIIAAARAGKHIF
CEKPIDTSLDVIDKALVEVRKAGVKLQVGFNRRFDQNYRRVRKAIENNEI
GDPQIMHIVSRDPSPPPIEYVKNSGGIWMDCSIHDMDMARYLIGSEVEDV
YTLGAVNINPEIEEYGDVDTSIVTLRFKNGVIGSIDNSRQAVYGYDQRCE
VLGSGGSIHINNNYQNSAVISNSAAVMRDLPLNFFMDRYTDSFIVELNEF
CDAVLHDKPVPCTGLDGRAPVVIALAAKKSFQERRPVSISEVDQPLPAEL
VGWDGQ*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:59886..61106-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2360.t1 ID=Gcaud2360.t1|Name=Gcaud2360.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:59886..61106- (Gracilaria caudata M_176_S67 male)
ATGACTGCCTTCGTGCCGTCCTCGTTCGCCTCGCAATGGGTCCGTCCGTC
TACTGCGCATCCGAACAGCTCGCATACCTCGCTGCGAGCACGCTCCGCAC
GCCATGCCGCCGTCACAATGTCTATTCCCGTGCCGAAGGAGTCCTTAAAG
GCCATCACACCCACTGATGACGAGCCTCGTCTCAACATCGGAATCATCGG
CGCGGGACGCATTGGCCAGGTGCACGCCGACAACATTACCTTCCGTCTGC
GCAATGCCAACCTCGTCGGCGTCTCTTCCGGTTCTAAGGTGCTTGCTGAG
CGTTGTTCCCTCGCCCACGGATGTCAGCCATTCTACGACTATCATAAGCT
CATCGAGGATCCTTCCGTTAACGCCGTTTGCATTTGCTCCGCATCCAATC
AGCACACCACGCAAATCATTGCCGCTGCGCGAGCTGGCAAGCACATTTTC
TGTGAAAAACCCATTGATACTTCTTTGGATGTCATTGACAAGGCCCTGGT
AGAGGTACGAAAGGCTGGCGTCAAGCTTCAAGTCGGTTTCAATCGGCGCT
TTGACCAGAACTATAGACGTGTGCGAAAAGCTATCGAAAACAACGAAATC
GGTGACCCTCAGATTATGCACATTGTCAGTCGCGATCCCTCTCCCCCACC
AATTGAGTACGTCAAGAATTCTGGAGGTATCTGGATGGACTGCAGTATTC
ACGACATGGATATGGCACGCTACCTCATCGGCTCTGAAGTGGAAGACGTC
TACACCCTGGGCGCAGTCAACATCAACCCCGAAATTGAAGAGTATGGCGA
CGTCGACACCAGTATCGTAACTCTTCGCTTCAAGAACGGTGTCATCGGTA
GTATTGACAACTCCCGTCAAGCTGTGTACGGTTATGATCAGCGATGTGAA
GTTCTTGGATCAGGCGGTTCCATCCACATCAACAATAACTACCAGAATTC
TGCTGTCATCTCCAACTCAGCAGCTGTGATGCGTGATTTACCGCTCAATT
TCTTCATGGATCGTTATACCGATTCATTCATCGTTGAGCTCAACGAATTC
TGTGATGCTGTGTTGCACGATAAACCTGTCCCTTGCACGGGACTTGACGG
ACGCGCGCCAGTCGTGATTGCGTTGGCTGCTAAGAAATCATTCCAGGAAA
GACGACCGGTTAGCATTTCAGAAGTAGATCAGCCGCTTCCCGCAGAACTC
GTCGGATGGGATGGGCAGTAA
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:59886..61106-

>Gcaud2360.t1 ID=Gcaud2360.t1|Name=Gcaud2360.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1221bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:59886..61106- (Gracilaria caudata M_176_S67 male)
ATGACTGCCTTCGTGCCGTCCTCGTTCGCCTCGCAATGGGTCCGTCCGTC
TACTGCGCATCCGAACAGCTCGCATACCTCGCTGCGAGCACGCTCCGCAC
GCCATGCCGCCGTCACAATGTCTATTCCCGTGCCGAAGGAGTCCTTAAAG
GCCATCACACCCACTGATGACGAGCCTCGTCTCAACATCGGAATCATCGG
CGCGGGACGCATTGGCCAGGTGCACGCCGACAACATTACCTTCCGTCTGC
GCAATGCCAACCTCGTCGGCGTCTCTTCCGGTTCTAAGGTGCTTGCTGAG
CGTTGTTCCCTCGCCCACGGATGTCAGCCATTCTACGACTATCATAAGCT
CATCGAGGATCCTTCCGTTAACGCCGTTTGCATTTGCTCCGCATCCAATC
AGCACACCACGCAAATCATTGCCGCTGCGCGAGCTGGCAAGCACATTTTC
TGTGAAAAACCCATTGATACTTCTTTGGATGTCATTGACAAGGCCCTGGT
AGAGGTACGAAAGGCTGGCGTCAAGCTTCAAGTCGGTTTCAATCGGCGCT
TTGACCAGAACTATAGACGTGTGCGAAAAGCTATCGAAAACAACGAAATC
GGTGACCCTCAGATTATGCACATTGTCAGTCGCGATCCCTCTCCCCCACC
AATTGAGTACGTCAAGAATTCTGGAGGTATCTGGATGGACTGCAGTATTC
ACGACATGGATATGGCACGCTACCTCATCGGCTCTGAAGTGGAAGACGTC
TACACCCTGGGCGCAGTCAACATCAACCCCGAAATTGAAGAGTATGGCGA
CGTCGACACCAGTATCGTAACTCTTCGCTTCAAGAACGGTGTCATCGGTA
GTATTGACAACTCCCGTCAAGCTGTGTACGGTTATGATCAGCGATGTGAA
GTTCTTGGATCAGGCGGTTCCATCCACATCAACAATAACTACCAGAATTC
TGCTGTCATCTCCAACTCAGCAGCTGTGATGCGTGATTTACCGCTCAATT
TCTTCATGGATCGTTATACCGATTCATTCATCGTTGAGCTCAACGAATTC
TGTGATGCTGTGTTGCACGATAAACCTGTCCCTTGCACGGGACTTGACGG
ACGCGCGCCAGTCGTGATTGCGTTGGCTGCTAAGAAATCATTCCAGGAAA
GACGACCGGTTAGCATTTCAGAAGTAGATCAGCCGCTTCCCGCAGAACTC
GTCGGATGGGATGGGCAGTAA
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