Gcaud2354.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2354.t1
Unique Name	Gcaud2354.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:47119..48270 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN15600
PFAMs	BCIP
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15262
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue	1.08e-22
EggNOG OGs	KOG3034@1\|root,KOG3034@2759\|Eukaryota,37PZM@33090\|Viridiplantae,3G76U@35493\|Streptophyta
Description	Belongs to the BCP1 family
COG category	K
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2354	Gcaud2354	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 47119..48270 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2354.t1.start1	Gcaud2354.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 47119..47121 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2354.t1.CDS1	Gcaud2354.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 47119..48270 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2354.t1.exon1	Gcaud2354.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 47119..48270 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2354.t1.stop1	Gcaud2354.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 48268..48270 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2354.t1	Gcaud2354.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 47119..48270 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+

mRNA sequence

>Gcaud2354.t1 ID=Gcaud2354.t1|Name=Gcaud2354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MGKRKRNGEKRRANSSTENGAAASENRARAEETKDVDANCVHYASSSEED
SGKELLRETAKLFSVFDKDVCRSLGSDSDLDFDKDQDEEDDKDKEYMKDI
LLTRSKADESDVELSVEFFDPREDDVSALSMLLGKYSKACTSVGKGKEQV
TSSRALAKVVCAQTRVGTTIRLSDEDAPIGFISCINIREHAKMLKDLKRK
LIQVAEKENNGRFITLLNKCMEGSGRFDSERMGLVLCERVMNMPTLVVGK
MFEALCCEIEWATEDEKTQEQRASFKFGWYLYIAEVYCYEAEREKDEGVK
EDKKKKRARVEKKESEQQIAFARVEDSEWHKHASCSVSWDWGGAEDGVKQ
RRMAMIVAAKKMATIREAVEQRVNGSSSGEADE*

spliced messenger RNA

>Gcaud2354.t1 ID=Gcaud2354.t1|Name=Gcaud2354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAGCGCAAACGAAACGGTGAGAAAAGAAGAGCCAACAGCAGCAC
AGAAAACGGTGCTGCAGCGAGTGAGAACAGAGCAAGAGCAGAGGAAACAA
AAGATGTTGATGCAAACTGCGTGCATTACGCGTCATCATCTGAAGAGGAC
AGCGGGAAGGAATTGCTGAGGGAAACGGCGAAACTGTTCTCGGTTTTTGA
CAAGGATGTATGCCGTAGTTTGGGAAGTGATTCAGACCTTGATTTTgata
aggaccaagatgaggaagatgataaagataaagaGTACATGAAGGACATT
CTGTTGACGAGAAGCAAGGCGGATGAAAGCGATGTAGAGCTAAGCGTGGA
ATTTTTTGACCCTCGTGAGGATGACGTGAGTGCGCTTAGCATGTTGTTAG
GCAAGTACAGCAAAGCTTGTACTTCAGTGGGCAAAGGAAAAGAACAGGTT
ACGAGCAGTCGTGCGCTGGCCAAGGTGGTTTGTGCTCAGACTCGTGTTGG
AACGACGATTCGTCTGAGCGACGAAGACGCTCCAATTGGATTCATTTCAT
GCATAAATATTCGCGAGCACGCCAAAATGCTCAAGGACCTGAAGCGAAAG
CTGATTCAAGTGGCGGAGAAAGAAAACAATGGGAGGTTCATCACTCTGTT
GAACAAGTGTATGGAGGGCAGTGGCAGATTCGACAGTGAGCGCATGGGAC
TAGTGCTGTGTGAGAGGGTGATGAACATGCCCACCTTGGTGGTGGGCAAG
ATGTTTGAGGCGCTGTGTTGTGAGATTGAATGGGCAACTGAGGACGAAAA
AACGCAGGAGCAGAGGGCCTCGTTCAAATTTGGGTGGTACTTGTACATCG
CTGAGGTGTACTGCTACgaggcggagcgagagaaggacgagggggtgaag
gaggaCAAGAAGAAAAAGCGAGCGCGAGTGGAGAAGAAAGAAAGCGAGCA
GCAAATCGCATTCGCCAGGGTAGAGGACAGCGAATGGCACAAGCACGCGA
GCTGCAGCGTGAGCTGGGACTGGGGCGGGGCTGAAGACGGAGTAAAGCAG
CGACGCATGGCGATGATCGTGGCGGCCAAAAAGATGGCGACGATCCGCGA
GGCGGTGGAACAGAGAGTGAACGGCAGCAGTAGTGGGGAGGCAGACGAGT
AG

protein sequence of Gcaud2354.t1

>Gcaud2354.t1 ID=Gcaud2354.t1|Name=Gcaud2354.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MGKRKRNGEKRRANSSTENGAAASENRARAEETKDVDANCVHYASSSEED
SGKELLRETAKLFSVFDKDVCRSLGSDSDLDFDKDQDEEDDKDKEYMKDI
LLTRSKADESDVELSVEFFDPREDDVSALSMLLGKYSKACTSVGKGKEQV
TSSRALAKVVCAQTRVGTTIRLSDEDAPIGFISCINIREHAKMLKDLKRK
LIQVAEKENNGRFITLLNKCMEGSGRFDSERMGLVLCERVMNMPTLVVGK
MFEALCCEIEWATEDEKTQEQRASFKFGWYLYIAEVYCYEAEREKDEGVK
EDKKKKRARVEKKESEQQIAFARVEDSEWHKHASCSVSWDWGGAEDGVKQ
RRMAMIVAAKKMATIREAVEQRVNGSSSGEADE*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2354.t1 ID=Gcaud2354.t1|Name=Gcaud2354.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+ (Gracilaria caudata M_176_S67 male)
ATGGGCAAGCGCAAACGAAACGGTGAGAAAAGAAGAGCCAACAGCAGCAC
AGAAAACGGTGCTGCAGCGAGTGAGAACAGAGCAAGAGCAGAGGAAACAA
AAGATGTTGATGCAAACTGCGTGCATTACGCGTCATCATCTGAAGAGGAC
AGCGGGAAGGAATTGCTGAGGGAAACGGCGAAACTGTTCTCGGTTTTTGA
CAAGGATGTATGCCGTAGTTTGGGAAGTGATTCAGACCTTGATTTTgata
aggaccaagatgaggaagatgataaagataaagaGTACATGAAGGACATT
CTGTTGACGAGAAGCAAGGCGGATGAAAGCGATGTAGAGCTAAGCGTGGA
ATTTTTTGACCCTCGTGAGGATGACGTGAGTGCGCTTAGCATGTTGTTAG
GCAAGTACAGCAAAGCTTGTACTTCAGTGGGCAAAGGAAAAGAACAGGTT
ACGAGCAGTCGTGCGCTGGCCAAGGTGGTTTGTGCTCAGACTCGTGTTGG
AACGACGATTCGTCTGAGCGACGAAGACGCTCCAATTGGATTCATTTCAT
GCATAAATATTCGCGAGCACGCCAAAATGCTCAAGGACCTGAAGCGAAAG
CTGATTCAAGTGGCGGAGAAAGAAAACAATGGGAGGTTCATCACTCTGTT
GAACAAGTGTATGGAGGGCAGTGGCAGATTCGACAGTGAGCGCATGGGAC
TAGTGCTGTGTGAGAGGGTGATGAACATGCCCACCTTGGTGGTGGGCAAG
ATGTTTGAGGCGCTGTGTTGTGAGATTGAATGGGCAACTGAGGACGAAAA
AACGCAGGAGCAGAGGGCCTCGTTCAAATTTGGGTGGTACTTGTACATCG
CTGAGGTGTACTGCTACgaggcggagcgagagaaggacgagggggtgaag
gaggaCAAGAAGAAAAAGCGAGCGCGAGTGGAGAAGAAAGAAAGCGAGCA
GCAAATCGCATTCGCCAGGGTAGAGGACAGCGAATGGCACAAGCACGCGA
GCTGCAGCGTGAGCTGGGACTGGGGCGGGGCTGAAGACGGAGTAAAGCAG
CGACGCATGGCGATGATCGTGGCGGCCAAAAAGATGGCGACGATCCGCGA
GGCGGTGGAACAGAGAGTGAACGGCAGCAGTAGTGGGGAGGCAGACGAGT
AG

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+

>Gcaud2354.t1 ID=Gcaud2354.t1|Name=Gcaud2354.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:47119..48270+ (Gracilaria caudata M_176_S67 male)
ATGGGCAAGCGCAAACGAAACGGTGAGAAAAGAAGAGCCAACAGCAGCAC
AGAAAACGGTGCTGCAGCGAGTGAGAACAGAGCAAGAGCAGAGGAAACAA
AAGATGTTGATGCAAACTGCGTGCATTACGCGTCATCATCTGAAGAGGAC
AGCGGGAAGGAATTGCTGAGGGAAACGGCGAAACTGTTCTCGGTTTTTGA
CAAGGATGTATGCCGTAGTTTGGGAAGTGATTCAGACCTTGATTTTgata
aggaccaagatgaggaagatgataaagataaagaGTACATGAAGGACATT
CTGTTGACGAGAAGCAAGGCGGATGAAAGCGATGTAGAGCTAAGCGTGGA
ATTTTTTGACCCTCGTGAGGATGACGTGAGTGCGCTTAGCATGTTGTTAG
GCAAGTACAGCAAAGCTTGTACTTCAGTGGGCAAAGGAAAAGAACAGGTT
ACGAGCAGTCGTGCGCTGGCCAAGGTGGTTTGTGCTCAGACTCGTGTTGG
AACGACGATTCGTCTGAGCGACGAAGACGCTCCAATTGGATTCATTTCAT
GCATAAATATTCGCGAGCACGCCAAAATGCTCAAGGACCTGAAGCGAAAG
CTGATTCAAGTGGCGGAGAAAGAAAACAATGGGAGGTTCATCACTCTGTT
GAACAAGTGTATGGAGGGCAGTGGCAGATTCGACAGTGAGCGCATGGGAC
TAGTGCTGTGTGAGAGGGTGATGAACATGCCCACCTTGGTGGTGGGCAAG
ATGTTTGAGGCGCTGTGTTGTGAGATTGAATGGGCAACTGAGGACGAAAA
AACGCAGGAGCAGAGGGCCTCGTTCAAATTTGGGTGGTACTTGTACATCG
CTGAGGTGTACTGCTACgaggcggagcgagagaaggacgagggggtgaag
gaggaCAAGAAGAAAAAGCGAGCGCGAGTGGAGAAGAAAGAAAGCGAGCA
GCAAATCGCATTCGCCAGGGTAGAGGACAGCGAATGGCACAAGCACGCGA
GCTGCAGCGTGAGCTGGGACTGGGGCGGGGCTGAAGACGGAGTAAAGCAG
CGACGCATGGCGATGATCGTGGCGGCCAAAAAGATGGCGACGATCCGCGA
GGCGGTGGAACAGAGAGTGAACGGCAGCAGTAGTGGGGAGGCAGACGAGT
AG