Gcaud1226.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1226.t1
Unique NameGcaud1226.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4853_length_1939_cov_3.659091contigNODE_4853_length_1939_cov_3.659091:1202..1912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707431.1
PFAMsPMT,PMT_4TMC,RRM_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059,RC00397
KEGG koko:K00728
KEGG ReactionR04072,R07620,R11399
KEGG Pathwayko00514,ko00515,ko01100,map00514,map00515,map01100
Evalue3.33e-49
EggNOG OGsCOG1928@1|root,KOG3359@2759|Eukaryota
EC2.4.1.109
Descriptiondolichyl-phosphate-mannose-protein mannosyltransferase activity
COG categoryO
CAZyGT39
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1226Gcaud1226Gracilaria caudata M_176_S67 malegeneNODE_4853_length_1939_cov_3.659091 1202..1912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1226.t1Gcaud1226.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4853_length_1939_cov_3.659091 1202..1912 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1226.t1.CDS1Gcaud1226.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4853_length_1939_cov_3.659091 1202..1795 +
Gcaud1226.t1.CDS2Gcaud1226.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_4853_length_1939_cov_3.659091 1903..1912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1226.t1.exon1Gcaud1226.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4853_length_1939_cov_3.659091 1202..1795 +
Gcaud1226.t1.exon2Gcaud1226.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_4853_length_1939_cov_3.659091 1903..1912 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1226.t1.intron1Gcaud1226.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_4853_length_1939_cov_3.659091 1796..1902 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1226.t1.stop1Gcaud1226.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4853_length_1939_cov_3.659091 1910..1912 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1226.t1 ID=Gcaud1226.t1|Name=Gcaud1226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
XLGLPPAIVFDEAHFGAFVDHVLRRTAYFDIHPPLGKLTLAAAGWFLGYR
AHDSFKYDAIGREYNAVLFLALRIVSVVFGALTNVLMYETARQLAVSRLC
GVFCALLFMFDPLNVVESRLILMEAQLMFYSVLALYCALKLWKTDRAKKG
RSFFWLTCTAFACSCAVSVKWTALVTPALIAVVSFFALHFVSMPLSAVQL
S*
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spliced messenger RNA

>Gcaud1226.t1 ID=Gcaud1226.t1|Name=Gcaud1226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=604bp|location=Sequence derived from alignment at NODE_4853_length_1939_cov_3.659091:1202..1912+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATTGGGTTTGCCGCCGGCCATTGTGTTCGATGAGGCGCACTTCGGGGCGT
TCGTGGACCATGTGTTGCGTCGTACCGCGTACTTTGACATTCATCCGCCG
CTGGGAAAGCTTACGTTGGCGGCTGCGGGCTGGTTTCTTGGTTACCGTGC
GCACGATTCGTTCAAGTATGACGCGATTGGACGCGAGTATAACGCGGTGC
TGTTTCTGGCGTTGAGGATTGTGTCGGTGGTATTCGGCGCTTTGACGAAT
GTTTTGATGTATGAGACGGCGAGACAACTGGCTGTTTCCAGACTGTGCGG
CGTGTTTTGTGCGCTATTGTTTATGTTTGATCCTCTTAATGTGGTGGAGA
GTCGTCTCATTCTTATGGAAGCTCAGCTCATGTTTTATAGTGTGCTTGCG
TTGTATTGCGCCTTGAAGCTGTGGAAAACAGATCGTGCAAAGAAGGGACG
CTCCTTTTTCTGGTTGACTTGTACTGCGTTTGCTTGTTCGTGCGCCGTTT
CCGTCAAGTGGACTGCGTTGGTGACGCCGGCGCTTATTGCCGTCGTGTCC
TTCTTCGCGTTGCATTTTGTGAGTATGCCGCTGTCCGCTGTGCAGCTTTC
GTAG
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protein sequence of Gcaud1226.t1

>Gcaud1226.t1 ID=Gcaud1226.t1|Name=Gcaud1226.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
XLGLPPAIVFDEAHFGAFVDHVLRRTAYFDIHPPLGKLTLAAAGWFLGYR
AHDSFKYDAIGREYNAVLFLALRIVSVVFGALTNVLMYETARQLAVSRLC
GVFCALLFMFDPLNVVESRLILMEAQLMFYSVLALYCALKLWKTDRAKKG
RSFFWLTCTAFACSCAVSVKWTALVTPALIAVVSFFALHFVSMPLSAVQL
S*
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mRNA from alignment at NODE_4853_length_1939_cov_3.659091:1202..1912+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1226.t1 ID=Gcaud1226.t1|Name=Gcaud1226.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_4853_length_1939_cov_3.659091:1202..1912+ (Gracilaria caudata M_176_S67 male)
ATTGGGTTTGCCGCCGGCCATTGTGTTCGATGAGGCGCACTTCGGGGCGT
TCGTGGACCATGTGTTGCGTCGTACCGCGTACTTTGACATTCATCCGCCG
CTGGGAAAGCTTACGTTGGCGGCTGCGGGCTGGTTTCTTGGTTACCGTGC
GCACGATTCGTTCAAGTATGACGCGATTGGACGCGAGTATAACGCGGTGC
TGTTTCTGGCGTTGAGGATTGTGTCGGTGGTATTCGGCGCTTTGACGAAT
GTTTTGATGTATGAGACGGCGAGACAACTGGCTGTTTCCAGACTGTGCGG
CGTGTTTTGTGCGCTATTGTTTATGTTTGATCCTCTTAATGTGGTGGAGA
GTCGTCTCATTCTTATGGAAGCTCAGCTCATGTTTTATAGTGTGCTTGCG
TTGTATTGCGCCTTGAAGCTGTGGAAAACAGATCGTGCAAAGAAGGGACG
CTCCTTTTTCTGGTTGACTTGTACTGCGTTTGCTTGTTCGTGCGCCGTTT
CCGTCAAGTGGACTGCGTTGGTGACGCCGGCGCTTATTGCCGTCGTGTCC
TTCTTCGCGTTGCATTTTGTGAGTATGCCGCTGTCCGCTGTGCAGTGCGG
GTGGATGCTGCTCGTCGCGCTGTCGTGGTACCTGTTTTGGTTTCATGTCC
ATTTTGAACGTATGACTCACACGGGACCCGGCACTCCGTTTCTCATGGAA
GGCTTTCGTAG
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Coding sequence (CDS) from alignment at NODE_4853_length_1939_cov_3.659091:1202..1912+

>Gcaud1226.t1 ID=Gcaud1226.t1|Name=Gcaud1226.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=604bp|location=Sequence derived from alignment at NODE_4853_length_1939_cov_3.659091:1202..1912+ (Gracilaria caudata M_176_S67 male)
ATTGGGTTTGCCGCCGGCCATTGTGTTCGATGAGGCGCACTTCGGGGCGT
TCGTGGACCATGTGTTGCGTCGTACCGCGTACTTTGACATTCATCCGCCG
CTGGGAAAGCTTACGTTGGCGGCTGCGGGCTGGTTTCTTGGTTACCGTGC
GCACGATTCGTTCAAGTATGACGCGATTGGACGCGAGTATAACGCGGTGC
TGTTTCTGGCGTTGAGGATTGTGTCGGTGGTATTCGGCGCTTTGACGAAT
GTTTTGATGTATGAGACGGCGAGACAACTGGCTGTTTCCAGACTGTGCGG
CGTGTTTTGTGCGCTATTGTTTATGTTTGATCCTCTTAATGTGGTGGAGA
GTCGTCTCATTCTTATGGAAGCTCAGCTCATGTTTTATAGTGTGCTTGCG
TTGTATTGCGCCTTGAAGCTGTGGAAAACAGATCGTGCAAAGAAGGGACG
CTCCTTTTTCTGGTTGACTTGTACTGCGTTTGCTTGTTCGTGCGCCGTTT
CCGTCAAGTGGACTGCGTTGGTGACGCCGGCGCTTATTGCCGTCGTGTCC
TTCTTCGCGTTGCATTTTGTGAGTATGCCGCTGTCCGCTGTGCAGCTTTC
GTAG
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