Gcaud8030.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8030.t1
Unique NameGcaud8030.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length167
Homology
BLAST of Gcaud8030.t1 vs. uniprot
Match: A0A2V3IGI8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGI8_9FLOR)

HSP 1 Score: 159 bits (401), Expect = 4.530e-47
Identity = 90/133 (67.67%), Postives = 103/133 (77.44%), Query Frame = 0
Query:    1 MAFVTPVVLPRCGLSHASNSVAARPAAPVCVPYAPLEIRAAKHVQFKGAKKADRRRPKKHRPSDINRKPPSFNPEPLRAEGLPPVYKIIKPEELEAAFGGKEVIASAEMVATALAAE--DKFEESSTVDSTDA 131
            MAFV   VLPR GLS+AS SV+ RPA      ++PL+IRAAKHVQFKG KKA R RPKKHRPSDINRKPP FNPEPLRAEGLPPV +I+K E+ E  F G+ V+ASAE V   LAA+  D FEESSTV++TDA
Sbjct:    1 MAFVNAAVLPRTGLSYASTSVSVRPATAAPTVHSPLDIRAAKHVQFKGTKKAYRTRPKKHRPSDINRKPPPFNPEPLRAEGLPPVMEIVKAEDAEKFFEGRTVLASAETVQAELAAQQKDSFEESSTVEATDA 133          
BLAST of Gcaud8030.t1 vs. uniprot
Match: A0A1X6NTM2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTM2_PORUM)

HSP 1 Score: 79.0 bits (193), Expect = 3.010e-16
Identity = 49/88 (55.68%), Postives = 56/88 (63.64%), Query Frame = 0
Query:    2 AFVTPVVLPRC-GLSHASNSVAARPAAPVCVPYAPLEIRAAKHVQFKGAKKADRRRPKKHRPSDINRKPPSFNPEPLRAEGLPPVYKI 88
            AFV    L R  G +  S  V  + AAP       + I AAKH QFK AKKA+R RPKKHR SDINRK PS+N EPLRAEGLP  +K+
Sbjct:    3 AFVQCAALTRTLGATVGSPVVTTKRAAPAVAAPVNITIEAAKHAQFKAAKKANRYRPKKHRLSDINRKAPSYNVEPLRAEGLPADWKL 90          
BLAST of Gcaud8030.t1 vs. uniprot
Match: A0A5J4ZBM1_PORPP (Protein ORANGE-LIKE, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZBM1_PORPP)

HSP 1 Score: 63.9 bits (154), Expect = 6.120e-9
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   17 ASNSVAARPAAPVC----VPYAPLEIRAAKHVQFKGAKKADRRRPKKHRPSDINRKPPSFNPEPLR-AEGLPPVYKIIKPEELE 95
            AS+    R +A VC    V   P  ++ A HVQFK  KKA+ RRPKKHR SDINR P  ++ + LR  EGLPPV  I+  +++E
Sbjct:    9 ASSLFVERGSASVCSTARVSAGPAPLQMAHHVQFKNIKKANHRRPKKHRLSDINRAPVKYSTDALRDTEGLPPVMTIVPKQQIE 92          
BLAST of Gcaud8030.t1 vs. uniprot
Match: A0A7R9UHM5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHM5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.190e-6
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 0
Query:   41 AKHVQFKGAKKADRRRPKKHRPSDINRKPPSFNPEPLRAEGLPPVYKII 89
            A HV  KGAKKA + RPKKHRPSD  RK P +N EP R EG P  + ++
Sbjct:   76 AHHVNPKGAKKARKNRPKKHRPSDKFRKEPGYNVEPGRYEGAPSEWTVV 124          
The following BLAST results are available for this feature:
BLAST of Gcaud8030.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IGI8_9FLOR4.530e-4767.67Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NTM2_PORUM3.010e-1655.68Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4ZBM1_PORPP6.120e-947.62Protein ORANGE-LIKE, chloroplastic n=1 Tax=Porphyr... [more]
A0A7R9UHM5_9STRA5.190e-657.14Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_47_length_66049_cov_4.331180contigNODE_47_length_66049_cov_4.331180:56602..57207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8030.t1Gcaud8030.t1Gracilaria caudata M_176_S67 malemRNANODE_47_length_66049_cov_4.331180 56602..57207 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8030.t1 ID=Gcaud8030.t1|Name=Gcaud8030.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MAFVTPVVLPRCGLSHASNSVAARPAAPVCVPYAPLEIRAAKHVQFKGAK
KADRRRPKKHRPSDINRKPPSFNPEPLRAEGLPPVYKIIKPEELEAAFGG
KEVIASAEMVATALAAEDKFEESSTVDSTDAQQSEPTLAAEQAEDATDAA
AQEQTDDTPEQSGTPA*
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