Gcaud3110.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3110.t1
Unique Name	Gcaud3110.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	433

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_478_length_24326_cov_5.271673	contig	NODE_478_length_24326_cov_5.271673:5313..6709 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708192.1
Preferred name	CCBL2
PFAMs	Aminotran_1_2
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00006,RC01210,RC01245
KEGG ko	ko:K00816,ko:K09142,ko:K14264
KEGG Reaction	R01956,R04171,R09366,R09373
KEGG Pathway	ko00380,ko00450,ko01100,ko05204,map00380,map00450,map01100,map05204
GOs	GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006090,GO:0006103,GO:0006520,GO:0006558,GO:0006559,GO:0006568,GO:0006569,GO:0006575,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009072,GO:0009074,GO:0009308,GO:0009310,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016053,GO:0016054,GO:0016212,GO:0016740,GO:0016769,GO:0016829,GO:0016846,GO:0017144,GO:0019439,GO:0019752,GO:0031974,GO:0031981,GO:0032787,GO:0034641,GO:0036137,GO:0042180,GO:0042402,GO:0042430,GO:0042436,GO:0042537,GO:0042737,GO:0042802,GO:0042803,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044106,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046218,GO:0046394,GO:0046395,GO:0046483,GO:0046700,GO:0046983,GO:0047312,GO:0047315,GO:0047316,GO:0047804,GO:0047945,GO:0050896,GO:0051186,GO:0051704,GO:0051707,GO:0070013,GO:0070189,GO:0070546,GO:0070548,GO:0071704,GO:0097052,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1902221,GO:1902222
Evalue	2.19e-116
EggNOG OGs	COG0436@1\|root,KOG0257@2759\|Eukaryota
EC	2.6.1.64,2.6.1.7,4.4.1.13
Description	transferase activity, transferring nitrogenous groups
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01007

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3110	Gcaud3110	Gracilaria caudata M_176_S67 male	gene	NODE_478_length_24326_cov_5.271673 5313..6709 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1	Gcaud3110.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_478_length_24326_cov_5.271673 5313..6709 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1.start1	Gcaud3110.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_478_length_24326_cov_5.271673 5313..5315 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1.CDS1	Gcaud3110.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_478_length_24326_cov_5.271673 5313..5388 +
Gcaud3110.t1.CDS2	Gcaud3110.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_478_length_24326_cov_5.271673 5487..6709 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1.exon1	Gcaud3110.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_478_length_24326_cov_5.271673 5313..5388 +
Gcaud3110.t1.exon2	Gcaud3110.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_478_length_24326_cov_5.271673 5487..6709 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1.intron1	Gcaud3110.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_478_length_24326_cov_5.271673 5389..5486 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3110.t1.stop1	Gcaud3110.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_478_length_24326_cov_5.271673 6707..6709 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+
coding sequence from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+

mRNA sequence

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=433bp
MLPFGGPSVWLEFTPLSKLASSINLGQGAPGWASPAFVKDALVKAAQEDS
YCQYSRSSGVLALVEEISRMYTPKLLPPTLQSRGIDPLKQVLVTVGASQA
LSLACNSLLQEGDEALLIEPAFDIYTAAVRTAGAEPVYIPLRVKGNHLSS
ANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSREELKGILDILETK
APSCIVLSDEVYEHLVFSGEHIPFASVSESAFERTLSIYSIGKTFSATGM
KLGWMVGPHNLLRDSQILQQYMVFCVNHSSQAAAAEMLQFAQSPYKGFGT
YFEWLCDMYRNKRDFLIEAIRSAGMEPIVPQGAFYICARVPDGHPIKREK
GLPDEIRKLVEQGKLQIDQGTVDRTDYNMSRTLVAKKRVTTIPISAFFKP
EHVGKSDLSKDFIRFAFCHPDEVLSEASRRLR*

spliced messenger RNA

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1299bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTCAAGGAGCTCCAGGATGGGCCT
CTCCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCA
TATTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAAT
CTCGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTG
GGATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCT
CTAAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCT
CATAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAG
CTGAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCC
GCAAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGA
CAAAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAG
TATTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAA
GCTCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTT
CAGTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGC
GTACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATG
AAACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAAT
TCTTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGG
CTGCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACC
TACTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAAT
AGAAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCT
TTTACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAA
GGTTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAAT
CGATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGG
TAGCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCT
GAGCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATT
TTGTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA

protein sequence of Gcaud3110.t1

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=433bp
MLPFGGPSVWLEFTPLSKLASSINLGQGAPGWASPAFVKDALVKAAQEDS
YCQYSRSSGVLALVEEISRMYTPKLLPPTLQSRGIDPLKQVLVTVGASQA
LSLACNSLLQEGDEALLIEPAFDIYTAAVRTAGAEPVYIPLRVKGNHLSS
ANDFVLDLEELSNAITDKTRMLILNSPHNPTGKVFSREELKGILDILETK
APSCIVLSDEVYEHLVFSGEHIPFASVSESAFERTLSIYSIGKTFSATGM
KLGWMVGPHNLLRDSQILQQYMVFCVNHSSQAAAAEMLQFAQSPYKGFGT
YFEWLCDMYRNKRDFLIEAIRSAGMEPIVPQGAFYICARVPDGHPIKREK
GLPDEIRKLVEQGKLQIDQGTVDRTDYNMSRTLVAKKRVTTIPISAFFKP
EHVGKSDLSKDFIRFAFCHPDEVLSEASRRLR*

mRNA from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1397bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTGAGTCTTTGCGTAACATGGCTG
ATATCTAGCGCACTCTGATGTACATTCGAAAGCATGTCTAACACGCAAGG
CCATATCGTGGTACACGAATGTAGGTCAAGGAGCTCCAGGATGGGCCTCT
CCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCATA
TTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAATCT
CGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTGGG
ATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCTCT
AAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCTCA
TAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAGCT
GAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCCGC
AAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGACA
AAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAGTA
TTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAAGC
TCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTTCA
GTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGCGT
ACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATGAA
ACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAATTC
TTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGGCT
GCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACCTA
CTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAATAG
AAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCTTT
TACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAAGG
TTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAATCG
ATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGGTA
GCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCTGA
GCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATTTT
GTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA

Coding sequence (CDS) from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+

>Gcaud3110.t1 ID=Gcaud3110.t1|Name=Gcaud3110.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1299bp|location=Sequence derived from alignment at NODE_478_length_24326_cov_5.271673:5313..6709+ (Gracilaria caudata M_176_S67 male)
ATGCTTCCGTTTGGAGGTCCTTCAGTTTGGCTAGAATTTACTCCTCTTTC
GAAACTTGCATCAAGTATTAACTTAGGTCAAGGAGCTCCAGGATGGGCCT
CTCCCGCTTTTGTCAAAGATGCTTTGGTGAAGGCAGCCCAGGAGGATTCA
TATTGCCAATACTCTCGTTCTTCCGGAGTGCTTGCGCTCGTTGAAGAAAT
CTCGCGCATGTACACACCCAAGTTGCTACCTCCAACTTTGCAGTCACGTG
GGATAGATCCCCTTAAACAAGTTCTCGTCACAGTTGGTGCATCTCAAGCT
CTAAGCTTGGCATGCAACTCCTTGCTACAAGAAGGTGATGAAGCTCTTCT
CATAGAACCCGCATTCGACATCTACACAGCCGCCGTGCGTACGGCAGGAG
CTGAGCCAGTGTACATTCCGCTTCGGGTGAAAGGAAATCATCTGTCATCC
GCAAACGACTTTGTTCTTGACCTAGAGGAATTATCGAACGCTATCACTGA
CAAAACTCGGATGCTGATCCTTAACTCCCCTCACAACCCCACAGGCAAAG
TATTTTCACGTGAAGAACTAAAGGGGATATTGGATATATTAGAAACCAAA
GCTCCCTCTTGTATTGTACTGTCAGATGAAGTGTACGAGCATCTGGTGTT
CAGTGGTGAGCATATTCCCTTCGCATCGGTGTCTGAGAGTGCATTCGAGC
GTACTCTTAGCATCTACAGTATTGGAAAGACTTTCAGTGCGACCGGAATG
AAACTCGGTTGGATGGTAGGTCCTCACAATCTCCTCAGAGATTCTCAAAT
TCTTCAGCAGTACATGGTCTTTTGTGTGAATCATTCAAGTCAGGCTGCGG
CTGCTGAAATGCTCCAGTTCGCTCAAAGTCCGTACAAGGGATTTGGCACC
TACTTCGAATGGTTGTGTGACATGTATAGAAACAAACGCGATTTCTTAAT
AGAAGCAATTCGCAGCGCCGGAATGGAACCAATTGTGCCGCAGGGGGCCT
TTTACATCTGCGCAAGAGTGCCAGATGGACATCCAATCAAGAGAGAGAAA
GGTTTGCCCGATGAGATTCGCAAACTGGTAGAGCAAGGAAAACTGCAAAT
CGATCAAGGGACGGTAGACCGAACGGATTACAATATGTCTCGTACGTTGG
TAGCAAAGAAGAGAGTTACCACAATCCCAATATCAGCGTTCTTCAAGCCT
GAGCATGTTGGAAAAAGCGATCTTTCGAAAGACTTTATTCGTTTCGCATT
TTGTCATCCAGATGAGGTTCTTTCTGAGGCTTCCAGGCGACTTCGGTAA