Gcaud7469.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7469.t1
Unique NameGcaud7469.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length114
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_477_length_24373_cov_4.435714contigNODE_477_length_24373_cov_4.435714:13731..14180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707484.1
PFAMsPP-binding
Max annot lvl2759|Eukaryota
KEGG koko:K03955
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Evalue3.09e-26
EggNOG OGsCOG0236@1|root,KOG1748@2759|Eukaryota
Descriptionacyl binding
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7469Gcaud7469Gracilaria caudata M_176_S67 malegeneNODE_477_length_24373_cov_4.435714 13731..14180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1Gcaud7469.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_477_length_24373_cov_4.435714 13731..14180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1.stop1Gcaud7469.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_477_length_24373_cov_4.435714 13731..13733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1.CDS1Gcaud7469.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_477_length_24373_cov_4.435714 13731..13922 -
Gcaud7469.t1.CDS2Gcaud7469.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_477_length_24373_cov_4.435714 14031..14180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1.exon1Gcaud7469.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_477_length_24373_cov_4.435714 13731..13922 -
Gcaud7469.t1.exon2Gcaud7469.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_477_length_24373_cov_4.435714 14031..14180 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1.intron1Gcaud7469.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_477_length_24373_cov_4.435714 13923..14030 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7469.t1.start1Gcaud7469.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_477_length_24373_cov_4.435714 14178..14180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7469.t1 ID=Gcaud7469.t1|Name=Gcaud7469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=114bp
MMRSSTQPSYACLKAMKLHSFSRSFASEPGFPDKADVSDRVLELVRKFEK
VQPEKVTESSHFVNDLGLDSLDTVELVMALEDEFNIEISDEEAEKIMTCG
DAITYVAGNVHTN*
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spliced messenger RNA

>Gcaud7469.t1 ID=Gcaud7469.t1|Name=Gcaud7469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:13731..14180- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATCTTCCACCCAGCCATCATACGCATGCTTGAAGGCTATGAA
GCTTCATTCCTTTTCGAGATCATTTGCTTCAGAACCCGGATTTCCAGACA
AGGCAGATGTTTCCGACCGCGTGTTGGAGCTGGTTCGAAAGTTCGAGAAG
GTTCAACCCGAGAAAGTCACTGAGAGTTCACACTTTGTAAATGATCTTGG
GCTCGATAGTTTGGACACTGTTGAGCTGGTTATGGCGCTAGAGGATGAGT
TCAATATTGAAATCTCGGACGAAGAAGCCGAAAAGATTATGACATGTGGC
GATGCAATAACTTACGTAGCCGGCAATGTTCATACCAACTAA
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protein sequence of Gcaud7469.t1

>Gcaud7469.t1 ID=Gcaud7469.t1|Name=Gcaud7469.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=114bp
MMRSSTQPSYACLKAMKLHSFSRSFASEPGFPDKADVSDRVLELVRKFEK
VQPEKVTESSHFVNDLGLDSLDTVELVMALEDEFNIEISDEEAEKIMTCG
DAITYVAGNVHTN*
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mRNA from alignment at NODE_477_length_24373_cov_4.435714:13731..14180-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7469.t1 ID=Gcaud7469.t1|Name=Gcaud7469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:13731..14180- (Gracilaria caudata M_176_S67 male)
ATGATGCGATCTTCCACCCAGCCATCATACGCATGCTTGAAGGCTATGAA
GCTTCATTCCTTTTCGAGATCATTTGCTTCAGAACCCGGATTTCCAGACA
AGGCAGATGTTTCCGACCGCGTGTTGGAGCTGGTTCGAAAGTTCGAGAAG
GTAAGATCACTATCCCTAATTTTTTTTCGTACAACCTCTCTGAGAGCGTG
CAATCGATAAACATGCGGTTCTAACGGCTTGCTGTTGTAACGATCTCCCA
ATGTGTAGGTTCAACCCGAGAAAGTCACTGAGAGTTCACACTTTGTAAAT
GATCTTGGGCTCGATAGTTTGGACACTGTTGAGCTGGTTATGGCGCTAGA
GGATGAGTTCAATATTGAAATCTCGGACGAAGAAGCCGAAAAGATTATGA
CATGTGGCGATGCAATAACTTACGTAGCCGGCAATGTTCATACCAACTAA
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Coding sequence (CDS) from alignment at NODE_477_length_24373_cov_4.435714:13731..14180-

>Gcaud7469.t1 ID=Gcaud7469.t1|Name=Gcaud7469.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=342bp|location=Sequence derived from alignment at NODE_477_length_24373_cov_4.435714:13731..14180- (Gracilaria caudata M_176_S67 male)
ATGATGCGATCTTCCACCCAGCCATCATACGCATGCTTGAAGGCTATGAA
GCTTCATTCCTTTTCGAGATCATTTGCTTCAGAACCCGGATTTCCAGACA
AGGCAGATGTTTCCGACCGCGTGTTGGAGCTGGTTCGAAAGTTCGAGAAG
GTTCAACCCGAGAAAGTCACTGAGAGTTCACACTTTGTAAATGATCTTGG
GCTCGATAGTTTGGACACTGTTGAGCTGGTTATGGCGCTAGAGGATGAGT
TCAATATTGAAATCTCGGACGAAGAAGCCGAAAAGATTATGACATGTGGC
GATGCAATAACTTACGTAGCCGGCAATGTTCATACCAACTAA
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