Gcaud1793.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1793.t2
Unique Name	Gcaud1793.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:20521..21639 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CML085CT
PFAMs	UAA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15276
KEGG TC	2.A.7.11.2,2.A.7.11.3
Evalue	1.31e-88
EggNOG OGs	COG0697@1\|root,KOG1581@2759\|Eukaryota
Description	UDP-galactose transmembrane transporter activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1793	Gcaud1793	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 20521..21639 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1793.t2.stop1	Gcaud1793.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 20521..20523 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1793.t2.CDS1	Gcaud1793.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 20521..21639 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1793.t2.exon1	Gcaud1793.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 20521..21639 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1793.t2.start1	Gcaud1793.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 21637..21639 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1793.t2	Gcaud1793.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 20521..21639 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:20521..21639-
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:20521..21639-

mRNA sequence

>Gcaud1793.t2 ID=Gcaud1793.t2|Name=Gcaud1793.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MTAAQLARRHDGRQLPPDAPHPPHTALDEEPKLDVDITQSASLSKRRPPR
LSARTVAHAAACALCIMMSLMIYSLLQERIMTRPYSSPSSSDTAFFSHSL
FLVLANRMLAAVLAVALIVVRGESSHLKAAAPLTDYISVSVSNVIATSCQ
YEALKWLTFPTVTIGKCAKMLPVMLILKFKSGRQYTYEDFAVVGVVLAGC
ATMISSGNVSAQHSSSAEADTPFGFVLMLFYLLFDAITSTHQESLFEKYH
MSVYNQMLYINLSSACISIVALTARGGLWECARFITAFPSILPDICTLSL
SAVAGQFAITYTIQAFGALLYAGVMTTRQFCSVLASDIIFKHGLTVVQWT
GAMMVFAALFFKLWRKATRSSE*

spliced messenger RNA

>Gcaud1793.t2 ID=Gcaud1793.t2|Name=Gcaud1793.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21639- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGCACAGCTTGCCCGTCGTCATGACGGCCGACAACTGCCTCC
GGACGCGCCGCACCCGCCGCACACGGCGCTCGACGAAGAGCCCAAGTTGG
ACGTCGACATCACTCAATCCGCGTCACTTTCGAAGCGACGCCCGCCCAGG
CTGTCGGCCAGGACCGTCGCGCACGCCGCCGCATGCGCGCTTTGCATCAT
GATGAGCCTCATGATCTACTCGTTGCTGCAGGAACGCATTATGACCAGGC
CGTATTCGTCGCCTTCTTCTTCAGACACCGCTTTCTTCTCGCATTCGCTG
TTCCTGGTGTTGGCCAATCGCATGCTGGCGGCCGTTTTGGCCGTCGCGCT
CATTGTCGTGCGCGGCGAGTCGTCGCACTTGAAGGCGGCCGCGCCGTTGA
CGGACTACATTTCCGTGTCTGTCTCCAATGTGATTGCCACTTCCTGTCAG
TACGAGGCGCTCAAGTGGTTAACTTTCCCCACCGTCACTATCGGCAAATG
CGCCAAGATGTTGCCGGTGATGCTAATTCTCAAGTTCAAGTCGGGACGCC
AGTACACGTACGAAGACTTTGCGGTGGTGGGCGTGGTTCTGGCTGGCTGT
GCAACCATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGC
AGAGGCCGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCT
TCGACGCCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCAC
ATGTCCGTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTAT
TTCGATCGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCT
TCATAACTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTG
TCGGCGGTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGG
CGCGTTGCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGT
TGGCGAGTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACA
GGCGCCATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGC
CACGCGCAGCTCGGAGTGA

protein sequence of Gcaud1793.t2

>Gcaud1793.t2 ID=Gcaud1793.t2|Name=Gcaud1793.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MTAAQLARRHDGRQLPPDAPHPPHTALDEEPKLDVDITQSASLSKRRPPR
LSARTVAHAAACALCIMMSLMIYSLLQERIMTRPYSSPSSSDTAFFSHSL
FLVLANRMLAAVLAVALIVVRGESSHLKAAAPLTDYISVSVSNVIATSCQ
YEALKWLTFPTVTIGKCAKMLPVMLILKFKSGRQYTYEDFAVVGVVLAGC
ATMISSGNVSAQHSSSAEADTPFGFVLMLFYLLFDAITSTHQESLFEKYH
MSVYNQMLYINLSSACISIVALTARGGLWECARFITAFPSILPDICTLSL
SAVAGQFAITYTIQAFGALLYAGVMTTRQFCSVLASDIIFKHGLTVVQWT
GAMMVFAALFFKLWRKATRSSE*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:20521..21639-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1793.t2 ID=Gcaud1793.t2|Name=Gcaud1793.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21639- (Gracilaria caudata M_176_S67 male)
ATGACCGCCGCACAGCTTGCCCGTCGTCATGACGGCCGACAACTGCCTCC
GGACGCGCCGCACCCGCCGCACACGGCGCTCGACGAAGAGCCCAAGTTGG
ACGTCGACATCACTCAATCCGCGTCACTTTCGAAGCGACGCCCGCCCAGG
CTGTCGGCCAGGACCGTCGCGCACGCCGCCGCATGCGCGCTTTGCATCAT
GATGAGCCTCATGATCTACTCGTTGCTGCAGGAACGCATTATGACCAGGC
CGTATTCGTCGCCTTCTTCTTCAGACACCGCTTTCTTCTCGCATTCGCTG
TTCCTGGTGTTGGCCAATCGCATGCTGGCGGCCGTTTTGGCCGTCGCGCT
CATTGTCGTGCGCGGCGAGTCGTCGCACTTGAAGGCGGCCGCGCCGTTGA
CGGACTACATTTCCGTGTCTGTCTCCAATGTGATTGCCACTTCCTGTCAG
TACGAGGCGCTCAAGTGGTTAACTTTCCCCACCGTCACTATCGGCAAATG
CGCCAAGATGTTGCCGGTGATGCTAATTCTCAAGTTCAAGTCGGGACGCC
AGTACACGTACGAAGACTTTGCGGTGGTGGGCGTGGTTCTGGCTGGCTGT
GCAACCATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGC
AGAGGCCGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCT
TCGACGCCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCAC
ATGTCCGTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTAT
TTCGATCGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCT
TCATAACTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTG
TCGGCGGTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGG
CGCGTTGCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGT
TGGCGAGTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACA
GGCGCCATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGC
CACGCGCAGCTCGGAGTGA

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:20521..21639-

>Gcaud1793.t2 ID=Gcaud1793.t2|Name=Gcaud1793.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:20521..21639- (Gracilaria caudata M_176_S67 male)
ATGACCGCCGCACAGCTTGCCCGTCGTCATGACGGCCGACAACTGCCTCC
GGACGCGCCGCACCCGCCGCACACGGCGCTCGACGAAGAGCCCAAGTTGG
ACGTCGACATCACTCAATCCGCGTCACTTTCGAAGCGACGCCCGCCCAGG
CTGTCGGCCAGGACCGTCGCGCACGCCGCCGCATGCGCGCTTTGCATCAT
GATGAGCCTCATGATCTACTCGTTGCTGCAGGAACGCATTATGACCAGGC
CGTATTCGTCGCCTTCTTCTTCAGACACCGCTTTCTTCTCGCATTCGCTG
TTCCTGGTGTTGGCCAATCGCATGCTGGCGGCCGTTTTGGCCGTCGCGCT
CATTGTCGTGCGCGGCGAGTCGTCGCACTTGAAGGCGGCCGCGCCGTTGA
CGGACTACATTTCCGTGTCTGTCTCCAATGTGATTGCCACTTCCTGTCAG
TACGAGGCGCTCAAGTGGTTAACTTTCCCCACCGTCACTATCGGCAAATG
CGCCAAGATGTTGCCGGTGATGCTAATTCTCAAGTTCAAGTCGGGACGCC
AGTACACGTACGAAGACTTTGCGGTGGTGGGCGTGGTTCTGGCTGGCTGT
GCAACCATGATTTCGTCAGGCAACGTCTCCGCACAACACTCATCGAGCGC
AGAGGCCGATACGCCGTTTGGGTTTGTTCTCATGTTGTTCTACCTGCTCT
TCGACGCCATAACATCAACTCATCAAGAATCCCTTTTCGAGAAGTATCAC
ATGTCCGTGTACAATCAGATGCTTTACATCAATCTTTCGTCTGCGTGTAT
TTCGATCGTAGCGCTAACTGCGAGAGGCGGATTATGGGAATGCGCGCGCT
TCATAACTGCGTTTCCCTCCATCCTGCCGGACATATGCACGTTGTCATTG
TCGGCGGTGGCGGGACAGTTTGCCATCACGTACACCATTCAGGCGTTTGG
CGCGTTGCTCTACGCGGGAGTGATGACGACAAGACAATTTTGCTCCGTGT
TGGCGAGTGATATTATCTTCAAGCACGGCCTCACCGTGGTGCAATGGACA
GGCGCCATGATGGTTTTTGCGGCGTTGTTCTTCAAACTGTGGAGAAAGGC
CACGCGCAGCTCGGAGTGA