Gcaud9585.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9585.t1
Unique Name	Gcaud9585.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_4332_length_2363_cov_4.693662	contig	NODE_4332_length_2363_cov_4.693662:1941..2309 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	470704.XP_007756140.1
Preferred name	SLY1
PFAMs	Sec1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K19998
GOs	GO:0000139,GO:0000149,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006904,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010638,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019905,GO:0022406,GO:0030134,GO:0030135,GO:0031090,GO:0031334,GO:0031338,GO:0031340,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032940,GO:0033036,GO:0033043,GO:0034613,GO:0035542,GO:0035543,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0140029,GO:0140056
Evalue	2.45e-19
EggNOG OGs	COG5158@1\|root,KOG1301@2759\|Eukaryota,38BSP@33154\|Opisthokonta,3NXNB@4751\|Fungi,3QK9Z@4890\|Ascomycota,20ASK@147545\|Eurotiomycetes,3MU3X@451870\|Chaetothyriomycetidae
Description	Belongs to the STXBP unc-18 SEC1 family
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9585	Gcaud9585	Gracilaria caudata M_176_S67 male	gene	NODE_4332_length_2363_cov_4.693662 1941..2309 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9585.t1.stop1	Gcaud9585.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_4332_length_2363_cov_4.693662 1941..1943 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9585.t1.CDS1	Gcaud9585.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_4332_length_2363_cov_4.693662 1941..2309 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9585.t1.exon1	Gcaud9585.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_4332_length_2363_cov_4.693662 1941..2309 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9585.t1.start1	Gcaud9585.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_4332_length_2363_cov_4.693662 2307..2309 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9585.t1	Gcaud9585.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_4332_length_2363_cov_4.693662 1941..2309 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309-
coding sequence from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309-

mRNA sequence

>Gcaud9585.t1 ID=Gcaud9585.t1|Name=Gcaud9585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=123bp
MLSACTAGPDALEDGNDVWKVLMFDATGRDIIAPLLQVAGLKAADVTLHM
MLHAAHQPIPDVPDVYFVEPTKESMNQISSHSAKGFYASPWINLPTQSPE
IFSKALLIWGQPFLILARLPVE*

spliced messenger RNA

>Gcaud9585.t1 ID=Gcaud9585.t1|Name=Gcaud9585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=369bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCGGCATGCACTGCCGGACCTGACGCTCTTGAGGACGGCAACGA
TGTTTGGAAAGTTCTAATGTTTGATGCCACTGGCAGAGACATCATTGCTC
CGTTGCTTCAGGTTGCCGGTCTAAAAGCTGCCGATGTAACACTTCACATG
ATGCTCCATGCAGCCCACCAACCAATTCCCGATGTTCCGGATGTGTATTT
TGTGGAACCTACGAAGGAGAGTATGAACCAAATTTCTAGTCATTCTGCCA
AAGGGTTCTATGCCAGTCCATGGATCAACTTACCGACTCAATCTCCAGAA
ATCTTCTCGAAAGCTTTGCTGATATGGGGGCAACCGTTTCTAATCCTAGC
CCGTTTGCCGGTAGAATAG

protein sequence of Gcaud9585.t1

>Gcaud9585.t1 ID=Gcaud9585.t1|Name=Gcaud9585.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=123bp
MLSACTAGPDALEDGNDVWKVLMFDATGRDIIAPLLQVAGLKAADVTLHM
MLHAAHQPIPDVPDVYFVEPTKESMNQISSHSAKGFYASPWINLPTQSPE
IFSKALLIWGQPFLILARLPVE*

mRNA from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9585.t1 ID=Gcaud9585.t1|Name=Gcaud9585.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=369bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309- (Gracilaria caudata M_176_S67 male)
ATGCTTTCGGCATGCACTGCCGGACCTGACGCTCTTGAGGACGGCAACGA
TGTTTGGAAAGTTCTAATGTTTGATGCCACTGGCAGAGACATCATTGCTC
CGTTGCTTCAGGTTGCCGGTCTAAAAGCTGCCGATGTAACACTTCACATG
ATGCTCCATGCAGCCCACCAACCAATTCCCGATGTTCCGGATGTGTATTT
TGTGGAACCTACGAAGGAGAGTATGAACCAAATTTCTAGTCATTCTGCCA
AAGGGTTCTATGCCAGTCCATGGATCAACTTACCGACTCAATCTCCAGAA
ATCTTCTCGAAAGCTTTGCTGATATGGGGGCAACCGTTTCTAATCCTAGC
CCGTTTGCCGGTAGAATAG

Coding sequence (CDS) from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309-

>Gcaud9585.t1 ID=Gcaud9585.t1|Name=Gcaud9585.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=369bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:1941..2309- (Gracilaria caudata M_176_S67 male)
ATGCTTTCGGCATGCACTGCCGGACCTGACGCTCTTGAGGACGGCAACGA
TGTTTGGAAAGTTCTAATGTTTGATGCCACTGGCAGAGACATCATTGCTC
CGTTGCTTCAGGTTGCCGGTCTAAAAGCTGCCGATGTAACACTTCACATG
ATGCTCCATGCAGCCCACCAACCAATTCCCGATGTTCCGGATGTGTATTT
TGTGGAACCTACGAAGGAGAGTATGAACCAAATTTCTAGTCATTCTGCCA
AAGGGTTCTATGCCAGTCCATGGATCAACTTACCGACTCAATCTCCAGAA
ATCTTCTCGAAAGCTTTGCTGATATGGGGGCAACCGTTTCTAATCCTAGC
CCGTTTGCCGGTAGAATAG