Gcaud258.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud258.t1
Unique NameGcaud258.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4325_length_2367_cov_4.518453contigNODE_4325_length_2367_cov_4.518453:2..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud258Gcaud258Gracilaria caudata M_176_S67 malegeneNODE_4325_length_2367_cov_4.518453 2..305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud258.t1.CDS1Gcaud258.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4325_length_2367_cov_4.518453 2..305 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud258.t1.exon1Gcaud258.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4325_length_2367_cov_4.518453 2..305 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud258.t1.start1Gcaud258.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4325_length_2367_cov_4.518453 303..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud258.t1Gcaud258.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4325_length_2367_cov_4.518453 2..305 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud258.t1 ID=Gcaud258.t1|Name=Gcaud258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=102bp
MKITIITLATVLCTVLSAPASREVDVDESVSIGGPGGFGGDAFVTGAVVT
GGVGGDGVVGSAEVENFGAIVGGDGILTATVGNGAVGTVEGDGSITGFVT
NX
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spliced messenger RNA

>Gcaud258.t1 ID=Gcaud258.t1|Name=Gcaud258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp|location=Sequence derived from alignment at NODE_4325_length_2367_cov_4.518453:2..305- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATCACCATCATCACGCTCGCCACCGTGCTGTGCACTGTACTTAG
CGCCCCGGCTTCGAGGGAAGTGGACGTCGACGAATCGGTTAGCATCGGCG
GCCCTGGCGGCTTCGGAGGAGACGCCTTTGTGACCGGTGCCGTCGTTACG
GGCGGCGTTGGCGGCGACGGCGTTGTTGGCAGTGCTGAAGTTGAAAACTT
TGGTGCCATTGTGGGCGGCGACGGGATCTTGACTGCGACCGTGGGGAATG
GTGCTGTGGGAACAGTGGAGGGTGATGGTAGTATCACTGGCTTTGTGACT
AACA
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protein sequence of Gcaud258.t1

>Gcaud258.t1 ID=Gcaud258.t1|Name=Gcaud258.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=102bp
MKITIITLATVLCTVLSAPASREVDVDESVSIGGPGGFGGDAFVTGAVVT
GGVGGDGVVGSAEVENFGAIVGGDGILTATVGNGAVGTVEGDGSITGFVT
NX
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mRNA from alignment at NODE_4325_length_2367_cov_4.518453:2..305-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud258.t1 ID=Gcaud258.t1|Name=Gcaud258.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp|location=Sequence derived from alignment at NODE_4325_length_2367_cov_4.518453:2..305- (Gracilaria caudata M_176_S67 male)
ATGAAGATCACCATCATCACGCTCGCCACCGTGCTGTGCACTGTACTTAG
CGCCCCGGCTTCGAGGGAAGTGGACGTCGACGAATCGGTTAGCATCGGCG
GCCCTGGCGGCTTCGGAGGAGACGCCTTTGTGACCGGTGCCGTCGTTACG
GGCGGCGTTGGCGGCGACGGCGTTGTTGGCAGTGCTGAAGTTGAAAACTT
TGGTGCCATTGTGGGCGGCGACGGGATCTTGACTGCGACCGTGGGGAATG
GTGCTGTGGGAACAGTGGAGGGTGATGGTAGTATCACTGGCTTTGTGACT
AACA
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Coding sequence (CDS) from alignment at NODE_4325_length_2367_cov_4.518453:2..305-

>Gcaud258.t1 ID=Gcaud258.t1|Name=Gcaud258.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=304bp|location=Sequence derived from alignment at NODE_4325_length_2367_cov_4.518453:2..305- (Gracilaria caudata M_176_S67 male)
ATGAAGATCACCATCATCACGCTCGCCACCGTGCTGTGCACTGTACTTAG
CGCCCCGGCTTCGAGGGAAGTGGACGTCGACGAATCGGTTAGCATCGGCG
GCCCTGGCGGCTTCGGAGGAGACGCCTTTGTGACCGGTGCCGTCGTTACG
GGCGGCGTTGGCGGCGACGGCGTTGTTGGCAGTGCTGAAGTTGAAAACTT
TGGTGCCATTGTGGGCGGCGACGGGATCTTGACTGCGACCGTGGGGAATG
GTGCTGTGGGAACAGTGGAGGGTGATGGTAGTATCACTGGCTTTGTGACT
AACA
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