Gcaud257.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud257.t1
Unique Name	Gcaud257.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_426_length_25926_cov_5.837081	contig	NODE_426_length_25926_cov_5.837081:21940..23326 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud257	Gcaud257	Gracilaria caudata M_176_S67 male	gene	NODE_426_length_25926_cov_5.837081 21940..23326 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud257.t1.start1	Gcaud257.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_426_length_25926_cov_5.837081 21940..21942 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud257.t1.CDS1	Gcaud257.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_426_length_25926_cov_5.837081 21940..23326 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud257.t1.exon1	Gcaud257.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_426_length_25926_cov_5.837081 21940..23326 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud257.t1	Gcaud257.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_426_length_25926_cov_5.837081 21940..23326 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+
coding sequence from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+

mRNA sequence

>Gcaud257.t1 ID=Gcaud257.t1|Name=Gcaud257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=463bp
MEHTIENGNTALIFAAREGHPAVVQQLLKANAQVNHAANDGHTAITLAAG
KGHAAVVEQLLRAGAEVNHAANDGNTALILAAARGNAPVVKQLLAANAHI
NHANEDGGTALILASRKGHPEVVKHLLHANATIDHTVSIGNTALIFAARE
GHPEVVEQLLRANAQVNQTANDGLTALSVAAMNGHSAVVEQLLRANADIE
HADKDGDTPLVLASWKGHSPLVKQLLEAEAEVNHENENGEIALTLAARKG
HSEVVELLLHANAWIDHAVSNGNTALIFAAREGQSAVVEKLLNAHAKINH
AANDGHTALTLAARNGHLEVVERLLNTSVEVNHSNGHGSTALTLAAMNGH
SEVVEQLLRADAQIDHTVDNGNTALIFAAREGHSGVVQKLLRAKAQVNHA
ADDGHTALTLGARNGHLDVVVQLLRGNASVNHAKTSGDTALILASRDGHF
EVVEQLLIHQAQX

spliced messenger RNA

>Gcaud257.t1 ID=Gcaud257.t1|Name=Gcaud257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1387bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACACAATTGAAAATGGGAACACCGCATTGATCTTCGCAGCCCG
TGAAGGTCACCCAGCAGTGGTGCAGCAGTTGTTGAAAGCAAACGCTCAGG
TCAACCATGCAGCTAATGATGGACACACAGCCATAACTTTGGCAGCTGGA
AAGGGGCACGCCGCCGTAGTCGAGCAGCTGTTGAGAGCAGGTGCTGAGGT
TAACCATGCTGCCAATGATGGAAACACAGCTTTAATTTTGGCAGCCGCGA
GGGGTAATGCTCCAGTTGTGAAGCAGTTATTGGCAGCAAACGCCCATATC
AACCACGCAAACGAAGATGGAGGCACGGCATTGATCTTGGCATCCAGAAA
GGGTCATCCTGAAGTCGTCAAGCACCTGTTGCATGCGAATGCAACGATCG
ATCATACGGTTAGCATTGGAAACACCGCCCTGATTTTTGCAGCTCGTGAA
GGTCACCCCGAGGTAGTCGAACAGCTACTGAGAGCAAACGCACAGGTAAA
CCAGACAGCCAATGATGGACTTACGGCGTTATCTGTAGCAGCCATGAACG
GTCATTCAGCAGTTGTCGAGCAACTTTTGAGGGCAAACGCAGACATTGAA
CATGCAGACAAAGATGGAGACACACCACTGGTTCTTGCGAGTTGGAAAGG
TCATTCTCCTCTAGTCAAGCAGCTCTTAGAAGCAGAAGCAGAAGTCAACC
ACGAAAACGAGAATGGAGAAATCGCATTGACTCTGGCTGCCAGAAAGGGT
CATTCTGAAGTAGTGGAGCTGCTGTTGCATGCAAATGCATGGATCGACCA
TGCGGTTAGCAATGGAAATACCGCATTGATTTTCGCAGCTCGTGAAGGTC
AATCCGCAGTAGTCGAGAAGTTGTTGAACGCACACGCGAAGATCAACCAT
GCAGCCAACGATGGACACACAGCATTGACCTTGGCAGCCAGAAATGGGCA
TTTGGAAGTGGTCGAACGGCTATTGAATACAAGTGTAGAAGTCAACCACT
CCAACGGACATGGAAGTACCGCACTGACTTTGGCCGCCATGAATGGTCAT
TCCGAAGTAGTCGAACAGCTATTACGAGCAGATGCACAGATCGACCATAC
AGTTGACAACGGAAACACTGCATTGATTTTCGCTGCTCGGGAGGGTCACT
CTGGAGTCGTCCAGAAGCTCTTGAGGGCAAAAGCACAGGTCAACCATGCA
GCCGACGATGGGCACACAGCACTAACTCTGGGAGCCAGAAATGGTCATTT
GGATGTGGTCGTGCAGCTGTTACGCGGAAACGCCTCTGTCAATCATGCTA
AAACCAGTGGAGACACAGCATTGATACTCGCCTCCCGTGATGGACATTTT
GAGGTCGTTGAGCAGCTTTTGATTCATCAGGCTCAGt

protein sequence of Gcaud257.t1

>Gcaud257.t1 ID=Gcaud257.t1|Name=Gcaud257.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=463bp
MEHTIENGNTALIFAAREGHPAVVQQLLKANAQVNHAANDGHTAITLAAG
KGHAAVVEQLLRAGAEVNHAANDGNTALILAAARGNAPVVKQLLAANAHI
NHANEDGGTALILASRKGHPEVVKHLLHANATIDHTVSIGNTALIFAARE
GHPEVVEQLLRANAQVNQTANDGLTALSVAAMNGHSAVVEQLLRANADIE
HADKDGDTPLVLASWKGHSPLVKQLLEAEAEVNHENENGEIALTLAARKG
HSEVVELLLHANAWIDHAVSNGNTALIFAAREGQSAVVEKLLNAHAKINH
AANDGHTALTLAARNGHLEVVERLLNTSVEVNHSNGHGSTALTLAAMNGH
SEVVEQLLRADAQIDHTVDNGNTALIFAAREGHSGVVQKLLRAKAQVNHA
ADDGHTALTLGARNGHLDVVVQLLRGNASVNHAKTSGDTALILASRDGHF
EVVEQLLIHQAQX

mRNA from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud257.t1 ID=Gcaud257.t1|Name=Gcaud257.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1387bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACACAATTGAAAATGGGAACACCGCATTGATCTTCGCAGCCCG
TGAAGGTCACCCAGCAGTGGTGCAGCAGTTGTTGAAAGCAAACGCTCAGG
TCAACCATGCAGCTAATGATGGACACACAGCCATAACTTTGGCAGCTGGA
AAGGGGCACGCCGCCGTAGTCGAGCAGCTGTTGAGAGCAGGTGCTGAGGT
TAACCATGCTGCCAATGATGGAAACACAGCTTTAATTTTGGCAGCCGCGA
GGGGTAATGCTCCAGTTGTGAAGCAGTTATTGGCAGCAAACGCCCATATC
AACCACGCAAACGAAGATGGAGGCACGGCATTGATCTTGGCATCCAGAAA
GGGTCATCCTGAAGTCGTCAAGCACCTGTTGCATGCGAATGCAACGATCG
ATCATACGGTTAGCATTGGAAACACCGCCCTGATTTTTGCAGCTCGTGAA
GGTCACCCCGAGGTAGTCGAACAGCTACTGAGAGCAAACGCACAGGTAAA
CCAGACAGCCAATGATGGACTTACGGCGTTATCTGTAGCAGCCATGAACG
GTCATTCAGCAGTTGTCGAGCAACTTTTGAGGGCAAACGCAGACATTGAA
CATGCAGACAAAGATGGAGACACACCACTGGTTCTTGCGAGTTGGAAAGG
TCATTCTCCTCTAGTCAAGCAGCTCTTAGAAGCAGAAGCAGAAGTCAACC
ACGAAAACGAGAATGGAGAAATCGCATTGACTCTGGCTGCCAGAAAGGGT
CATTCTGAAGTAGTGGAGCTGCTGTTGCATGCAAATGCATGGATCGACCA
TGCGGTTAGCAATGGAAATACCGCATTGATTTTCGCAGCTCGTGAAGGTC
AATCCGCAGTAGTCGAGAAGTTGTTGAACGCACACGCGAAGATCAACCAT
GCAGCCAACGATGGACACACAGCATTGACCTTGGCAGCCAGAAATGGGCA
TTTGGAAGTGGTCGAACGGCTATTGAATACAAGTGTAGAAGTCAACCACT
CCAACGGACATGGAAGTACCGCACTGACTTTGGCCGCCATGAATGGTCAT
TCCGAAGTAGTCGAACAGCTATTACGAGCAGATGCACAGATCGACCATAC
AGTTGACAACGGAAACACTGCATTGATTTTCGCTGCTCGGGAGGGTCACT
CTGGAGTCGTCCAGAAGCTCTTGAGGGCAAAAGCACAGGTCAACCATGCA
GCCGACGATGGGCACACAGCACTAACTCTGGGAGCCAGAAATGGTCATTT
GGATGTGGTCGTGCAGCTGTTACGCGGAAACGCCTCTGTCAATCATGCTA
AAACCAGTGGAGACACAGCATTGATACTCGCCTCCCGTGATGGACATTTT
GAGGTCGTTGAGCAGCTTTTGATTCATCAGGCTCAGt

Coding sequence (CDS) from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+

>Gcaud257.t1 ID=Gcaud257.t1|Name=Gcaud257.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1387bp|location=Sequence derived from alignment at NODE_426_length_25926_cov_5.837081:21940..23326+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACACAATTGAAAATGGGAACACCGCATTGATCTTCGCAGCCCG
TGAAGGTCACCCAGCAGTGGTGCAGCAGTTGTTGAAAGCAAACGCTCAGG
TCAACCATGCAGCTAATGATGGACACACAGCCATAACTTTGGCAGCTGGA
AAGGGGCACGCCGCCGTAGTCGAGCAGCTGTTGAGAGCAGGTGCTGAGGT
TAACCATGCTGCCAATGATGGAAACACAGCTTTAATTTTGGCAGCCGCGA
GGGGTAATGCTCCAGTTGTGAAGCAGTTATTGGCAGCAAACGCCCATATC
AACCACGCAAACGAAGATGGAGGCACGGCATTGATCTTGGCATCCAGAAA
GGGTCATCCTGAAGTCGTCAAGCACCTGTTGCATGCGAATGCAACGATCG
ATCATACGGTTAGCATTGGAAACACCGCCCTGATTTTTGCAGCTCGTGAA
GGTCACCCCGAGGTAGTCGAACAGCTACTGAGAGCAAACGCACAGGTAAA
CCAGACAGCCAATGATGGACTTACGGCGTTATCTGTAGCAGCCATGAACG
GTCATTCAGCAGTTGTCGAGCAACTTTTGAGGGCAAACGCAGACATTGAA
CATGCAGACAAAGATGGAGACACACCACTGGTTCTTGCGAGTTGGAAAGG
TCATTCTCCTCTAGTCAAGCAGCTCTTAGAAGCAGAAGCAGAAGTCAACC
ACGAAAACGAGAATGGAGAAATCGCATTGACTCTGGCTGCCAGAAAGGGT
CATTCTGAAGTAGTGGAGCTGCTGTTGCATGCAAATGCATGGATCGACCA
TGCGGTTAGCAATGGAAATACCGCATTGATTTTCGCAGCTCGTGAAGGTC
AATCCGCAGTAGTCGAGAAGTTGTTGAACGCACACGCGAAGATCAACCAT
GCAGCCAACGATGGACACACAGCATTGACCTTGGCAGCCAGAAATGGGCA
TTTGGAAGTGGTCGAACGGCTATTGAATACAAGTGTAGAAGTCAACCACT
CCAACGGACATGGAAGTACCGCACTGACTTTGGCCGCCATGAATGGTCAT
TCCGAAGTAGTCGAACAGCTATTACGAGCAGATGCACAGATCGACCATAC
AGTTGACAACGGAAACACTGCATTGATTTTCGCTGCTCGGGAGGGTCACT
CTGGAGTCGTCCAGAAGCTCTTGAGGGCAAAAGCACAGGTCAACCATGCA
GCCGACGATGGGCACACAGCACTAACTCTGGGAGCCAGAAATGGTCATTT
GGATGTGGTCGTGCAGCTGTTACGCGGAAACGCCTCTGTCAATCATGCTA
AAACCAGTGGAGACACAGCATTGATACTCGCCTCCCGTGATGGACATTTT
GAGGTCGTTGAGCAGCTTTTGATTCATCAGGCTCAGt