Gcaud256.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud256.t1
Unique NameGcaud256.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length348
Homology
BLAST of Gcaud256.t1 vs. uniprot
Match: A0A2V3ITE7_9FLOR (Uncharacterized protein n=4 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITE7_9FLOR)

HSP 1 Score: 130 bits (328), Expect = 6.380e-31
Identity = 90/273 (32.97%), Postives = 126/273 (46.15%), Query Frame = 0
Query:   26 YPSRFKPDYNPFRSLPQVATLMDCAQVCTGWANAIIDKENWQSLCPRI-----------------------------------------------------------EQKEHIFEAWFNLQPILQTRCLHLTITNQAIAPHTDVFDRKRVGFLTLMVSKWSLLQSLDIDCAANEIFIPDTI-----LNYRDNYIPKPDPPFPALKRLSLSTHVDMRAGRNVTLVAPHVEHFHMRLSGY------GDDHLLSIERARTRGVYRQFLREDKRYRS 228
            Y   FKPD + FR +P+V TLM CAQVC  W++AII+K  W S    +                                                           +++     AW +L+P L+T+ LHL ++N       D+F  KRVGF TL +++W LLQSLD+D A N I  P  +     L+ +  ++ + + PFP LK+LSL T  + R  + VTLVAP VEH  +  SGY      GD H   I  +       QFL+EDK+YR+
Sbjct:   50 YRLLFKPDRDDFRGIPEVFTLMQCAQVCKVWSDAIIEKRFWDSNVTTMLGEQYAEPWKLGRRWNALFAHVPVPILGTMDQFLSNIGKIETSIRRGRPSFHVYLPLSSDRRRETIRAWCSLEPFLRTKALHLKVSNMTTGDD-DLFRGKRVGFKTLTLNEWPLLQSLDVDLAENGILSPAMVRSRTELDSKLEHVVRANLPFPCLKKLSLPTPPNGRGAQLVTLVAPKVEHCFIFNSGYSNDPPGGDMHCNCIWHS-------QFLQEDKKYRT 314          
BLAST of Gcaud256.t1 vs. uniprot
Match: A0A2V3ISG1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISG1_9FLOR)

HSP 1 Score: 105 bits (263), Expect = 2.450e-23
Identity = 60/148 (40.54%), Postives = 92/148 (62.16%), Query Frame = 0
Query:   86 LQPILQTRCLHLTITNQAIAPHTDVFDRKRVGFLTLMVSKWSLLQSLDIDCAANEIFI-----PDTILNYRDNYIPKPDPPFPALKRLSLSTHVDMRAGRNVTLVAPHVEHFHMRLSGYGDDHLLSIERARTRGVYRQFLREDKRYRS 228
            ++P L+T+ LHL +++       D+F  +RVGF TLM+++W LLQSLD+D A N I         T L+ +  ++ + +PPFP LK+LSL TH +    + VTLVAP VEH  +    Y ++ L  ++  R R +Y QFL+EDK+Y++
Sbjct:    1 MEPFLRTKALHLKVSDITTGGD-DLFGGQRVGFETLMLNEWPLLQSLDVDLAENGILTLAMVGSRTELDSKPEHVVRANPPFPCLKKLSLPTHPNGHGEQLVTLVAPKVEHCSIITYVYNNESL-GLDMHRNRILYSQFLQEDKKYKT 146          
The following BLAST results are available for this feature:
BLAST of Gcaud256.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITE7_9FLOR6.380e-3132.97Uncharacterized protein n=4 Tax=Gracilariopsis cho... [more]
A0A2V3ISG1_9FLOR2.450e-2340.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 254..347
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 231..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_426_length_25926_cov_5.837081contigNODE_426_length_25926_cov_5.837081:15730..19000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud256.t1Gcaud256.t1Gracilaria caudata M_176_S67 malemRNANODE_426_length_25926_cov_5.837081 15730..19000 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud256.t1 ID=Gcaud256.t1|Name=Gcaud256.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MAELDANSEEEELDRSAHEDGNRIDYPSRFKPDYNPFRSLPQVATLMDCA
QVCTGWANAIIDKENWQSLCPRIEQKEHIFEAWFNLQPILQTRCLHLTIT
NQAIAPHTDVFDRKRVGFLTLMVSKWSLLQSLDIDCAANEIFIPDTILNY
RDNYIPKPDPPFPALKRLSLSTHVDMRAGRNVTLVAPHVEHFHMRLSGYG
DDHLLSIERARTRGVYRQFLREDKRYRSPDMVTLLHSLAIVLTMICVVQT
SVLPSDNKQLSNNVMYANDKHHALKSALSGTSLLIRKGNERLDVDKRATG
HDSTDYNSAQARPTLVRQQNNGTIYGFVYKGGGGCRHCDEDDDDGRR*
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