Gcaud2809.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2809.t1
Unique Name	Gcaud2809.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_425_length_26049_cov_4.672086	contig	NODE_425_length_26049_cov_4.672086:20902..22657 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2809	Gcaud2809	Gracilaria caudata M_176_S67 male	gene	NODE_425_length_26049_cov_4.672086 20902..22657 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1	Gcaud2809.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_425_length_26049_cov_4.672086 20902..22657 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1.stop1	Gcaud2809.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_425_length_26049_cov_4.672086 20902..20904 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1.CDS1	Gcaud2809.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_425_length_26049_cov_4.672086 20902..22509 -
Gcaud2809.t1.CDS2	Gcaud2809.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_425_length_26049_cov_4.672086 22646..22657 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1.exon1	Gcaud2809.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_425_length_26049_cov_4.672086 20902..22509 -
Gcaud2809.t1.exon2	Gcaud2809.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_425_length_26049_cov_4.672086 22646..22657 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1.intron1	Gcaud2809.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_425_length_26049_cov_4.672086 22510..22645 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2809.t1.start1	Gcaud2809.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_425_length_26049_cov_4.672086 22655..22657 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_425_length_26049_cov_4.672086:20902..22657-
coding sequence from alignment at NODE_425_length_26049_cov_4.672086:20902..22657-

mRNA sequence

>Gcaud2809.t1 ID=Gcaud2809.t1|Name=Gcaud2809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp
LALTSVTTRSAESAEHFRMDRQRNRSLHPQPSSATPSLICVGGMLRVAET
PPPKTIAHSPLGPHSASPPSELQARIARTPLRTPSTTPFKALVSPFAATA
PFTAPSTPYSHSAITPVPLELSPAQTPTTLQGSSIPLRSKVPTAPTNANR
VKTFHREAQAPAHHLLTPKQVRELRRLCRKTANRAEFEDRLIQIRQVASI
AAMASSSLHLFDPQNPHSGLPLRVWVETHRTDGADWRDERPLSDEAIDEL
RRWDRLLKAWARVRFEAFQSYESDGHQRNIFAGPRSDTTETVLQPVRLRF
EQLSVGTSPTTPLNLVRHGRTGDAKVRDRMAQMTSPTTPDEHNTSFLRSQ
GANSRGANVSISKAKNAGSANGPVSSTNALHMVQSAWTKISPPVMRNCID
ERKPLGEVSINKVGDLINVTVPVINSQQYQSGSLRGFGKPSSKGADASAA
KGEENTLGIEQMKSWRNVVLESSKCGSRDDEAGTGTERFPSYGEDGYNGQ
DDVHGLIPPSRSELDWSILRGGEGSAPSFYSHHGAKHHK*

spliced messenger RNA

>Gcaud2809.t1 ID=Gcaud2809.t1|Name=Gcaud2809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at NODE_425_length_26049_cov_4.672086:20902..22657- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCTCTCACTAGCGTGACAACCCGTTCAGCCGAGTCCGCAGAACACTT
TCGCATGGATCGTCAACGAAACCGATCACTTCATCCGCAACCATCATCCG
CGACTCCATCCCTGATTTGCGTGGGCGGAATGCTTCGCGTAGCTGAGACT
CCGCCGCCGAAAACTATCGCACATTCGCCTCTAGGACCTCACTCAGCATC
GCCACCGTCTGAACTCCAAGCTCGTATCGCTCGTACGCCGCTGCGCACTC
CGAGTACCACTCCGTTCAAGGCGCTTGTCTCGCCGTTCGCAGCCACCGCC
CCGTTTACTGCGCCAAGTACACCCTACTCCCACTCAGCAATAACACCAGT
TCCGCTCGAACTATCTCCGGCACAAACACCAACCACATTGCAAGGAAGTT
CAATACCATTACGTTCTAAGGTCCCGACGGCCCCTACAAATGCCAACCGC
GTAAAAACGTTCCATAGAGAGGCTCAGGCGCCCGCGCACCATCTCCTTAC
CCCGAAGCAAGTGCGTGAGCTTCGCCGCCTTTGTCGTAAGACGGCAAACC
GAGCTGAATTTGAAGATCGCCTCATCCAAATCCGCCAGGTCGCCTCTATT
GCCGCTATGGCTTCTTCCTCACTGCATCTTTTCGATCCACAAAATCCGCA
TAGCGGTCTCCCTCTTCGGGTCTGGGTTGAGACTCACCGGACAGACGGTG
CGGATTGGCGTGATGAGCGGCCACTCTCCGATGAGGCAATAGACGAGCTT
CGTCGTTGGGATCGTTTGCTAAAGGCTTGGGCACGTGTGCGTTTTGAGGC
GTTCCAGTCGTACGAATCAGATGGGCATCAGCGGAACATATTTGCTGGTC
CAAGGTCTGATACAACCGAGACAGTTTTGCAGCCGGTGCGTTTACGGTTT
GAACAGTTATCTGTTGGTACGTCACCAACCACACCGCTTAACCTCGTCAG
GCACGGAAGAACAGGAGATGCAAAAGTGAGAGATCGCATGGCACAGATGA
CTTCCCCAACAACCCCAGATGAACACAACACTTCCTTTTTACGTTCACAA
GGTGCCAATAGCAGAGGAGCGAACGTGAGTATAAGCAAGGCGAAGAATGC
CGGAAGCGCTAATGGGCCGGTAAGCAGCACGAACGCGTTGCACATGGTTC
AATCTGCGTGGACCAAAATATCGCCACCGGTGATGAGGAATTGCATAGAT
GAAAGAAAGCCGCTGGGGGAGGTCAGCATCAATAAGGTTGGGGACCTAAT
TAATGTAACAGTGCCGGTTATCAATTCGCAGCAGTATCAATCAGGCAGCC
TGCGAGGTTTTGGCAAACCCAGCTCGAAGGGTGCGGATGCCTCGGCAGCT
AAGGGTGAGGAAAATACGCTCGGTATCGAGCAAATGAAATCGTGGAGAAA
TGTGGTCTTAGAGTCGTCCAAATGCGGGAGTCGGGATGACGAAGCGGGCA
CTGGTACTGAGCGATTTCCCAGCTACGGTGAGGACGGATATAATGGTCAA
GACGACGTACACGGTTTGATTCCCCCATCTCGATCGGAACTAGATTGGAG
TATACTGAGGGGTGGAGAAGGCTCCGCGCCTAGTTTTTACTCTCATCATG
GAGCAAAACATCACAAGTAA

protein sequence of Gcaud2809.t1

>Gcaud2809.t1 ID=Gcaud2809.t1|Name=Gcaud2809.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=540bp
LALTSVTTRSAESAEHFRMDRQRNRSLHPQPSSATPSLICVGGMLRVAET
PPPKTIAHSPLGPHSASPPSELQARIARTPLRTPSTTPFKALVSPFAATA
PFTAPSTPYSHSAITPVPLELSPAQTPTTLQGSSIPLRSKVPTAPTNANR
VKTFHREAQAPAHHLLTPKQVRELRRLCRKTANRAEFEDRLIQIRQVASI
AAMASSSLHLFDPQNPHSGLPLRVWVETHRTDGADWRDERPLSDEAIDEL
RRWDRLLKAWARVRFEAFQSYESDGHQRNIFAGPRSDTTETVLQPVRLRF
EQLSVGTSPTTPLNLVRHGRTGDAKVRDRMAQMTSPTTPDEHNTSFLRSQ
GANSRGANVSISKAKNAGSANGPVSSTNALHMVQSAWTKISPPVMRNCID
ERKPLGEVSINKVGDLINVTVPVINSQQYQSGSLRGFGKPSSKGADASAA
KGEENTLGIEQMKSWRNVVLESSKCGSRDDEAGTGTERFPSYGEDGYNGQ
DDVHGLIPPSRSELDWSILRGGEGSAPSFYSHHGAKHHK*

mRNA from alignment at NODE_425_length_26049_cov_4.672086:20902..22657-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2809.t1 ID=Gcaud2809.t1|Name=Gcaud2809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1756bp|location=Sequence derived from alignment at NODE_425_length_26049_cov_4.672086:20902..22657- (Gracilaria caudata M_176_S67 male)
TTGGCTCTCACTGTTCGTCAGCACCTATTTAATGCCTTTCGATCATCTCG
TTGCCGTTCTTACATCCAGAACCGATCCCAACGAGATCGACAAAACTTTC
CTATCCTCTCAATTCAAAAACCCATCTAACTCACTTCCAATCCGACAGAG
CGTGACAACCCGTTCAGCCGAGTCCGCAGAACACTTTCGCATGGATCGTC
AACGAAACCGATCACTTCATCCGCAACCATCATCCGCGACTCCATCCCTG
ATTTGCGTGGGCGGAATGCTTCGCGTAGCTGAGACTCCGCCGCCGAAAAC
TATCGCACATTCGCCTCTAGGACCTCACTCAGCATCGCCACCGTCTGAAC
TCCAAGCTCGTATCGCTCGTACGCCGCTGCGCACTCCGAGTACCACTCCG
TTCAAGGCGCTTGTCTCGCCGTTCGCAGCCACCGCCCCGTTTACTGCGCC
AAGTACACCCTACTCCCACTCAGCAATAACACCAGTTCCGCTCGAACTAT
CTCCGGCACAAACACCAACCACATTGCAAGGAAGTTCAATACCATTACGT
TCTAAGGTCCCGACGGCCCCTACAAATGCCAACCGCGTAAAAACGTTCCA
TAGAGAGGCTCAGGCGCCCGCGCACCATCTCCTTACCCCGAAGCAAGTGC
GTGAGCTTCGCCGCCTTTGTCGTAAGACGGCAAACCGAGCTGAATTTGAA
GATCGCCTCATCCAAATCCGCCAGGTCGCCTCTATTGCCGCTATGGCTTC
TTCCTCACTGCATCTTTTCGATCCACAAAATCCGCATAGCGGTCTCCCTC
TTCGGGTCTGGGTTGAGACTCACCGGACAGACGGTGCGGATTGGCGTGAT
GAGCGGCCACTCTCCGATGAGGCAATAGACGAGCTTCGTCGTTGGGATCG
TTTGCTAAAGGCTTGGGCACGTGTGCGTTTTGAGGCGTTCCAGTCGTACG
AATCAGATGGGCATCAGCGGAACATATTTGCTGGTCCAAGGTCTGATACA
ACCGAGACAGTTTTGCAGCCGGTGCGTTTACGGTTTGAACAGTTATCTGT
TGGTACGTCACCAACCACACCGCTTAACCTCGTCAGGCACGGAAGAACAG
GAGATGCAAAAGTGAGAGATCGCATGGCACAGATGACTTCCCCAACAACC
CCAGATGAACACAACACTTCCTTTTTACGTTCACAAGGTGCCAATAGCAG
AGGAGCGAACGTGAGTATAAGCAAGGCGAAGAATGCCGGAAGCGCTAATG
GGCCGGTAAGCAGCACGAACGCGTTGCACATGGTTCAATCTGCGTGGACC
AAAATATCGCCACCGGTGATGAGGAATTGCATAGATGAAAGAAAGCCGCT
GGGGGAGGTCAGCATCAATAAGGTTGGGGACCTAATTAATGTAACAGTGC
CGGTTATCAATTCGCAGCAGTATCAATCAGGCAGCCTGCGAGGTTTTGGC
AAACCCAGCTCGAAGGGTGCGGATGCCTCGGCAGCTAAGGGTGAGGAAAA
TACGCTCGGTATCGAGCAAATGAAATCGTGGAGAAATGTGGTCTTAGAGT
CGTCCAAATGCGGGAGTCGGGATGACGAAGCGGGCACTGGTACTGAGCGA
TTTCCCAGCTACGGTGAGGACGGATATAATGGTCAAGACGACGTACACGG
TTTGATTCCCCCATCTCGATCGGAACTAGATTGGAGTATACTGAGGGGTG
GAGAAGGCTCCGCGCCTAGTTTTTACTCTCATCATGGAGCAAAACATCAC
AAGTAA

Coding sequence (CDS) from alignment at NODE_425_length_26049_cov_4.672086:20902..22657-

>Gcaud2809.t1 ID=Gcaud2809.t1|Name=Gcaud2809.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1620bp|location=Sequence derived from alignment at NODE_425_length_26049_cov_4.672086:20902..22657- (Gracilaria caudata M_176_S67 male)
TTGGCTCTCACTAGCGTGACAACCCGTTCAGCCGAGTCCGCAGAACACTT
TCGCATGGATCGTCAACGAAACCGATCACTTCATCCGCAACCATCATCCG
CGACTCCATCCCTGATTTGCGTGGGCGGAATGCTTCGCGTAGCTGAGACT
CCGCCGCCGAAAACTATCGCACATTCGCCTCTAGGACCTCACTCAGCATC
GCCACCGTCTGAACTCCAAGCTCGTATCGCTCGTACGCCGCTGCGCACTC
CGAGTACCACTCCGTTCAAGGCGCTTGTCTCGCCGTTCGCAGCCACCGCC
CCGTTTACTGCGCCAAGTACACCCTACTCCCACTCAGCAATAACACCAGT
TCCGCTCGAACTATCTCCGGCACAAACACCAACCACATTGCAAGGAAGTT
CAATACCATTACGTTCTAAGGTCCCGACGGCCCCTACAAATGCCAACCGC
GTAAAAACGTTCCATAGAGAGGCTCAGGCGCCCGCGCACCATCTCCTTAC
CCCGAAGCAAGTGCGTGAGCTTCGCCGCCTTTGTCGTAAGACGGCAAACC
GAGCTGAATTTGAAGATCGCCTCATCCAAATCCGCCAGGTCGCCTCTATT
GCCGCTATGGCTTCTTCCTCACTGCATCTTTTCGATCCACAAAATCCGCA
TAGCGGTCTCCCTCTTCGGGTCTGGGTTGAGACTCACCGGACAGACGGTG
CGGATTGGCGTGATGAGCGGCCACTCTCCGATGAGGCAATAGACGAGCTT
CGTCGTTGGGATCGTTTGCTAAAGGCTTGGGCACGTGTGCGTTTTGAGGC
GTTCCAGTCGTACGAATCAGATGGGCATCAGCGGAACATATTTGCTGGTC
CAAGGTCTGATACAACCGAGACAGTTTTGCAGCCGGTGCGTTTACGGTTT
GAACAGTTATCTGTTGGTACGTCACCAACCACACCGCTTAACCTCGTCAG
GCACGGAAGAACAGGAGATGCAAAAGTGAGAGATCGCATGGCACAGATGA
CTTCCCCAACAACCCCAGATGAACACAACACTTCCTTTTTACGTTCACAA
GGTGCCAATAGCAGAGGAGCGAACGTGAGTATAAGCAAGGCGAAGAATGC
CGGAAGCGCTAATGGGCCGGTAAGCAGCACGAACGCGTTGCACATGGTTC
AATCTGCGTGGACCAAAATATCGCCACCGGTGATGAGGAATTGCATAGAT
GAAAGAAAGCCGCTGGGGGAGGTCAGCATCAATAAGGTTGGGGACCTAAT
TAATGTAACAGTGCCGGTTATCAATTCGCAGCAGTATCAATCAGGCAGCC
TGCGAGGTTTTGGCAAACCCAGCTCGAAGGGTGCGGATGCCTCGGCAGCT
AAGGGTGAGGAAAATACGCTCGGTATCGAGCAAATGAAATCGTGGAGAAA
TGTGGTCTTAGAGTCGTCCAAATGCGGGAGTCGGGATGACGAAGCGGGCA
CTGGTACTGAGCGATTTCCCAGCTACGGTGAGGACGGATATAATGGTCAA
GACGACGTACACGGTTTGATTCCCCCATCTCGATCGGAACTAGATTGGAG
TATACTGAGGGGTGGAGAAGGCTCCGCGCCTAGTTTTTACTCTCATCATG
GAGCAAAACATCACAAGTAA