Gcaud8478.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8478.t1
Unique Name	Gcaud8478.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_412_length_26355_cov_4.423431	contig	NODE_412_length_26355_cov_4.423431:24133..25887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123072.AUDH01000021_gene2045
Preferred name	der
PFAMs	KH_dom-like,MMR_HSR1
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K03977
Evalue	2.65e-77
EggNOG OGs	COG1160@1\|root,COG1160@2\|Bacteria,1MU9S@1224\|Proteobacteria,2TT38@28211\|Alphaproteobacteria,2JQT7@204441\|Rhodospirillales
Description	GTPase that plays an essential role in the late steps of ribosome biogenesis
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8478	Gcaud8478	Gracilaria caudata M_176_S67 male	gene	NODE_412_length_26355_cov_4.423431 24133..25887 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8478.t1.stop1	Gcaud8478.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_412_length_26355_cov_4.423431 24133..24135 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8478.t1.CDS1	Gcaud8478.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 24133..25887 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8478.t1.exon1	Gcaud8478.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 24133..25887 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8478.t1.start1	Gcaud8478.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_412_length_26355_cov_4.423431 25885..25887 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8478.t1	Gcaud8478.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_412_length_26355_cov_4.423431 24133..25887 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_412_length_26355_cov_4.423431:24133..25887-
coding sequence from alignment at NODE_412_length_26355_cov_4.423431:24133..25887-

mRNA sequence

>Gcaud8478.t1 ID=Gcaud8478.t1|Name=Gcaud8478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp
MRMRLLSVVRALHADARAGATARVAVPAAGARSAPAPTVYAHTRLTAALV
GRPNVGKSTLFNRLAAAVRGRQTDADGSPPLAFVRSVVHPLPGVTRDSRE
AAGAVADLLLKVVDTPGLESAVGLQEPVRAADDVPFAEGTSLVDAVAHCE
HVAYRRVYAHMKAATISAVHHSNLILFIIDASVGVTALDHAHAKWLRSVL
TPQKSLILVANKCDVADSDKRAIDAYELGFGDPVLISAEQALGFADLYER
IRHVPALPAIEHKPPQPAEDSPSDVSDAEIQIRQSFDDELVISTSARLRE
QPLRQLIVSIVGRPNVGKSTLLNRLVGEQRSIVAAAAGVTRDAVLCPWNA
QYERPEYPPVWLVDTPGVRAETKVSSDNLERLMVRASLQALRSSHVVVVV
MDATESLTRQDLKLMDVIITEGRAVVLVLNKMDALHESDMADWRARLRYE
VDNKLEQLKGVEVVEMSAKYWEDDPTQGKRLYDAVQRARGRWERRVPTSA
LNRFVKNFNERMSVGGGTRGERRNRIGVTKFITQKKIRPPMFRLDGSSAV
SMNYLRSLSNAIRHEFGFEGVPIRVKRPSRRKKR*

spliced messenger RNA

>Gcaud8478.t1 ID=Gcaud8478.t1|Name=Gcaud8478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:24133..25887- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATGCGACTGCTTTCTGTTGTGCGAGCGCTGCACGCGGACGCGCG
CGCGGGCGCTACCGCGCGCGTGGCGGTGCCCGCCGCTGGCGCGAGGAGCG
CGCCGGCGCCAACTGTGTACGCGCATACGAGGCTCACTGCCGCGCTTGTG
GGGCGTCCCAACGTGGGAAAGTCCACGCTGTTCAATCGGCTGGCCGCCGC
CGTGCGCGGCCGTCAAACCGACGCCGACGGCTCACCACCGCTTGCGTTTG
TGCGCTCCGTCGTTCATCCGCTGCCGGGCGTCACCAGGGACTCGAGGGAG
GCTGCTGGCGCCGTGGCTGACCTCTTGCTCAAGGTTGTCGACACCCCGGG
GTTGGAGAGTGCTGTCGGTCTGCAGGAGCCCGTCCGTGCGGCCGATGATG
TGCCCTTTGCAGAGGGTACTTCGCTTGTTGATGCTGTGGCCCATTGCGAG
CACGTTGCGTACCGTCGCGTGTATGCCCACATGAAAGCTGCTACCATCAG
CGCTGTTCACCATTCCAACCTCATTCTCTTTATTATTGACGCCTCGGTTG
GAGTCACCGCCTTGGACCATGCGCATGCCAAGTGGTTGCGCTCGGTTCTC
ACGCCGCAAAAGTCCCTTATTCTTGTCGCCAACAAATGCGATGTGGCCGA
TTCGGACAAACGAGCAATTGATGCCTACGAGCTTGGCTTTGGTGATCCTG
TTCTCATCTCTGCCGAACAAGCTCTAGGCTTTGCCGATCTCTATGAGCGC
ATTCGCCACGTGCCTGCGCTTCCCGCTATCGAGCACAAGCCGCCGCAACC
CGCAGAAGATTCCCCGTCGGATGTTAGTGACGCGGAGATTCAGATACGTC
AATCTTTTGACGACGAGCTGGTGATTTCCACTTCAGCGCGCCTTCGCGAG
CAGCCGCTTAGGCAACTCATTGTTTCTATCGTTGGTCGCCCGAACGTCGG
CAAGTCTACACTACTCAACCGACTTGTTGGCGAACAACGTTCAATTGTCG
CCGCCGCCGCTGGTGTCACACGTGACGCTGTTTTGTGCCCATGGAATGCG
CAGTATGAGCGGCCTGAGTACCCACCCGTGTGGCTCGTTGATACTCCTGG
GGTCCGCGCTGAAACTAAAGTTAGCTCTGACAATCTTGAAAGGCTTATGG
TAAGAGCTTCTCTACAAGCTCTCAGATCCAGTCATGTCGTGGTAGTTGTA
ATGGATGCCACAGAATCGCTTACTCGTCAAGACCTCAAGCTCATGGACGT
TATTATCACAGAGGGACGCGCTGTTGTGCTTGTACTTAATAAGATGGATG
CGTTACATGAGAGTGACATGGCTGACTGGAGAGCCCGGCTGCGCTATGAA
GTCGATAATAAGCTGGAACAATTGAAGGGTGTGGAAGTTGTAGAGATGTC
AGCAAAGTACTGGGAGGATGACCCAACGCAGGGCAAACGTTTGTACGATG
CTGTTCAACGTGCTAGAGGGCGATGGGAGAGGCGAGTACCTACTTCAGCT
CTCAACCGATTTGTGAAAAACTTTAATGAACGCATGTCCGTCGGTGGTGG
GACAAGAGGAGAGCGCCGAAATCGTATTGGAGTAACCAAATTCATTACAC
AGAAAAAGATTCGCCCTCCAATGTTTAGGTTGGATGGGTCGTCTGCTGTG
TCGATGAATTACCTTAGATCTCTTTCAAATGCAATCCGTCATGAATTCGG
GTTTGAAGGTGTGCCCATTCGCGTGAAGAGACCTTCCAGACGAAAAAAGC
GTTGA

protein sequence of Gcaud8478.t1

>Gcaud8478.t1 ID=Gcaud8478.t1|Name=Gcaud8478.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
MRMRLLSVVRALHADARAGATARVAVPAAGARSAPAPTVYAHTRLTAALV
GRPNVGKSTLFNRLAAAVRGRQTDADGSPPLAFVRSVVHPLPGVTRDSRE
AAGAVADLLLKVVDTPGLESAVGLQEPVRAADDVPFAEGTSLVDAVAHCE
HVAYRRVYAHMKAATISAVHHSNLILFIIDASVGVTALDHAHAKWLRSVL
TPQKSLILVANKCDVADSDKRAIDAYELGFGDPVLISAEQALGFADLYER
IRHVPALPAIEHKPPQPAEDSPSDVSDAEIQIRQSFDDELVISTSARLRE
QPLRQLIVSIVGRPNVGKSTLLNRLVGEQRSIVAAAAGVTRDAVLCPWNA
QYERPEYPPVWLVDTPGVRAETKVSSDNLERLMVRASLQALRSSHVVVVV
MDATESLTRQDLKLMDVIITEGRAVVLVLNKMDALHESDMADWRARLRYE
VDNKLEQLKGVEVVEMSAKYWEDDPTQGKRLYDAVQRARGRWERRVPTSA
LNRFVKNFNERMSVGGGTRGERRNRIGVTKFITQKKIRPPMFRLDGSSAV
SMNYLRSLSNAIRHEFGFEGVPIRVKRPSRRKKR*

mRNA from alignment at NODE_412_length_26355_cov_4.423431:24133..25887-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8478.t1 ID=Gcaud8478.t1|Name=Gcaud8478.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:24133..25887- (Gracilaria caudata M_176_S67 male)
ATGCGGATGCGACTGCTTTCTGTTGTGCGAGCGCTGCACGCGGACGCGCG
CGCGGGCGCTACCGCGCGCGTGGCGGTGCCCGCCGCTGGCGCGAGGAGCG
CGCCGGCGCCAACTGTGTACGCGCATACGAGGCTCACTGCCGCGCTTGTG
GGGCGTCCCAACGTGGGAAAGTCCACGCTGTTCAATCGGCTGGCCGCCGC
CGTGCGCGGCCGTCAAACCGACGCCGACGGCTCACCACCGCTTGCGTTTG
TGCGCTCCGTCGTTCATCCGCTGCCGGGCGTCACCAGGGACTCGAGGGAG
GCTGCTGGCGCCGTGGCTGACCTCTTGCTCAAGGTTGTCGACACCCCGGG
GTTGGAGAGTGCTGTCGGTCTGCAGGAGCCCGTCCGTGCGGCCGATGATG
TGCCCTTTGCAGAGGGTACTTCGCTTGTTGATGCTGTGGCCCATTGCGAG
CACGTTGCGTACCGTCGCGTGTATGCCCACATGAAAGCTGCTACCATCAG
CGCTGTTCACCATTCCAACCTCATTCTCTTTATTATTGACGCCTCGGTTG
GAGTCACCGCCTTGGACCATGCGCATGCCAAGTGGTTGCGCTCGGTTCTC
ACGCCGCAAAAGTCCCTTATTCTTGTCGCCAACAAATGCGATGTGGCCGA
TTCGGACAAACGAGCAATTGATGCCTACGAGCTTGGCTTTGGTGATCCTG
TTCTCATCTCTGCCGAACAAGCTCTAGGCTTTGCCGATCTCTATGAGCGC
ATTCGCCACGTGCCTGCGCTTCCCGCTATCGAGCACAAGCCGCCGCAACC
CGCAGAAGATTCCCCGTCGGATGTTAGTGACGCGGAGATTCAGATACGTC
AATCTTTTGACGACGAGCTGGTGATTTCCACTTCAGCGCGCCTTCGCGAG
CAGCCGCTTAGGCAACTCATTGTTTCTATCGTTGGTCGCCCGAACGTCGG
CAAGTCTACACTACTCAACCGACTTGTTGGCGAACAACGTTCAATTGTCG
CCGCCGCCGCTGGTGTCACACGTGACGCTGTTTTGTGCCCATGGAATGCG
CAGTATGAGCGGCCTGAGTACCCACCCGTGTGGCTCGTTGATACTCCTGG
GGTCCGCGCTGAAACTAAAGTTAGCTCTGACAATCTTGAAAGGCTTATGG
TAAGAGCTTCTCTACAAGCTCTCAGATCCAGTCATGTCGTGGTAGTTGTA
ATGGATGCCACAGAATCGCTTACTCGTCAAGACCTCAAGCTCATGGACGT
TATTATCACAGAGGGACGCGCTGTTGTGCTTGTACTTAATAAGATGGATG
CGTTACATGAGAGTGACATGGCTGACTGGAGAGCCCGGCTGCGCTATGAA
GTCGATAATAAGCTGGAACAATTGAAGGGTGTGGAAGTTGTAGAGATGTC
AGCAAAGTACTGGGAGGATGACCCAACGCAGGGCAAACGTTTGTACGATG
CTGTTCAACGTGCTAGAGGGCGATGGGAGAGGCGAGTACCTACTTCAGCT
CTCAACCGATTTGTGAAAAACTTTAATGAACGCATGTCCGTCGGTGGTGG
GACAAGAGGAGAGCGCCGAAATCGTATTGGAGTAACCAAATTCATTACAC
AGAAAAAGATTCGCCCTCCAATGTTTAGGTTGGATGGGTCGTCTGCTGTG
TCGATGAATTACCTTAGATCTCTTTCAAATGCAATCCGTCATGAATTCGG
GTTTGAAGGTGTGCCCATTCGCGTGAAGAGACCTTCCAGACGAAAAAAGC
GTTGA

Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:24133..25887-

>Gcaud8478.t1 ID=Gcaud8478.t1|Name=Gcaud8478.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1755bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:24133..25887- (Gracilaria caudata M_176_S67 male)
ATGCGGATGCGACTGCTTTCTGTTGTGCGAGCGCTGCACGCGGACGCGCG
CGCGGGCGCTACCGCGCGCGTGGCGGTGCCCGCCGCTGGCGCGAGGAGCG
CGCCGGCGCCAACTGTGTACGCGCATACGAGGCTCACTGCCGCGCTTGTG
GGGCGTCCCAACGTGGGAAAGTCCACGCTGTTCAATCGGCTGGCCGCCGC
CGTGCGCGGCCGTCAAACCGACGCCGACGGCTCACCACCGCTTGCGTTTG
TGCGCTCCGTCGTTCATCCGCTGCCGGGCGTCACCAGGGACTCGAGGGAG
GCTGCTGGCGCCGTGGCTGACCTCTTGCTCAAGGTTGTCGACACCCCGGG
GTTGGAGAGTGCTGTCGGTCTGCAGGAGCCCGTCCGTGCGGCCGATGATG
TGCCCTTTGCAGAGGGTACTTCGCTTGTTGATGCTGTGGCCCATTGCGAG
CACGTTGCGTACCGTCGCGTGTATGCCCACATGAAAGCTGCTACCATCAG
CGCTGTTCACCATTCCAACCTCATTCTCTTTATTATTGACGCCTCGGTTG
GAGTCACCGCCTTGGACCATGCGCATGCCAAGTGGTTGCGCTCGGTTCTC
ACGCCGCAAAAGTCCCTTATTCTTGTCGCCAACAAATGCGATGTGGCCGA
TTCGGACAAACGAGCAATTGATGCCTACGAGCTTGGCTTTGGTGATCCTG
TTCTCATCTCTGCCGAACAAGCTCTAGGCTTTGCCGATCTCTATGAGCGC
ATTCGCCACGTGCCTGCGCTTCCCGCTATCGAGCACAAGCCGCCGCAACC
CGCAGAAGATTCCCCGTCGGATGTTAGTGACGCGGAGATTCAGATACGTC
AATCTTTTGACGACGAGCTGGTGATTTCCACTTCAGCGCGCCTTCGCGAG
CAGCCGCTTAGGCAACTCATTGTTTCTATCGTTGGTCGCCCGAACGTCGG
CAAGTCTACACTACTCAACCGACTTGTTGGCGAACAACGTTCAATTGTCG
CCGCCGCCGCTGGTGTCACACGTGACGCTGTTTTGTGCCCATGGAATGCG
CAGTATGAGCGGCCTGAGTACCCACCCGTGTGGCTCGTTGATACTCCTGG
GGTCCGCGCTGAAACTAAAGTTAGCTCTGACAATCTTGAAAGGCTTATGG
TAAGAGCTTCTCTACAAGCTCTCAGATCCAGTCATGTCGTGGTAGTTGTA
ATGGATGCCACAGAATCGCTTACTCGTCAAGACCTCAAGCTCATGGACGT
TATTATCACAGAGGGACGCGCTGTTGTGCTTGTACTTAATAAGATGGATG
CGTTACATGAGAGTGACATGGCTGACTGGAGAGCCCGGCTGCGCTATGAA
GTCGATAATAAGCTGGAACAATTGAAGGGTGTGGAAGTTGTAGAGATGTC
AGCAAAGTACTGGGAGGATGACCCAACGCAGGGCAAACGTTTGTACGATG
CTGTTCAACGTGCTAGAGGGCGATGGGAGAGGCGAGTACCTACTTCAGCT
CTCAACCGATTTGTGAAAAACTTTAATGAACGCATGTCCGTCGGTGGTGG
GACAAGAGGAGAGCGCCGAAATCGTATTGGAGTAACCAAATTCATTACAC
AGAAAAAGATTCGCCCTCCAATGTTTAGGTTGGATGGGTCGTCTGCTGTG
TCGATGAATTACCTTAGATCTCTTTCAAATGCAATCCGTCATGAATTCGG
GTTTGAAGGTGTGCCCATTCGCGTGAAGAGACCTTCCAGACGAAAAAAGC
GTTGA