Gcaud8477.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8477.t1
Unique NameGcaud8477.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_412_length_26355_cov_4.423431contigNODE_412_length_26355_cov_4.423431:23517..24002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8477Gcaud8477Gracilaria caudata M_176_S67 malegeneNODE_412_length_26355_cov_4.423431 23517..24002 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8477.t1.start1Gcaud8477.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_412_length_26355_cov_4.423431 23517..23519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8477.t1.CDS1Gcaud8477.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_412_length_26355_cov_4.423431 23517..24002 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8477.t1.exon1Gcaud8477.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_412_length_26355_cov_4.423431 23517..24002 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8477.t1.stop1Gcaud8477.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_412_length_26355_cov_4.423431 24000..24002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8477.t1Gcaud8477.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_412_length_26355_cov_4.423431 23517..24002 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8477.t1 ID=Gcaud8477.t1|Name=Gcaud8477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=162bp
MSLLGPTVSIYIYHQLYNLFEKHGPLLSARFQTVVKKLNSNIDNGSESGR
LRSIPQSSRKEDNPFVLKIANEVIRITNMRLREKAVVSRIQMDDDQYELS
RRHAASDVARVAINVLEDVLKDGCGAALDSEEKLAVQSMIKGSIAQYSMN
RSWHNRLFRVM*
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spliced messenger RNA

>Gcaud8477.t1 ID=Gcaud8477.t1|Name=Gcaud8477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:23517..24002+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTACTGGGACCGACCGTATCGATATACATATATCATCAACTATA
CAACCTTTTCGAAAAACACGGTCCACTCTTAAGTGCAAGGTTTCAAACCG
TCGTCAAGAAACTCAACTCGAATATTGACAACGGATCAGAAAGCGGCCGG
CTTCGCTCTATACCGCAATCGTCTCGGAAGGAAGACAATCCATTTGTGCT
AAAGATTGCAAACGAAGTTATCCGCATTACTAATATGCGCCTCAGGGAGA
AGGCGGTTGTTTCAAGAATTCAGATGGATGATGACCAATACGAACTGAGT
CGGAGACATGCAGCTTCTGATGTCGCTCGTGTGGCCATCAACGTCCTTGA
AGACGTACTCAAAGACGGATGCGGCGCAGCTCTTGATTCAGAAGAAAAAC
TCGCCGTGCAATCCATGATTAAGGGATCAATTGCGCAGTATTCCATGAAC
CGATCATGGCATAATCGCCTTTTCCGCGTGATGTGA
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protein sequence of Gcaud8477.t1

>Gcaud8477.t1 ID=Gcaud8477.t1|Name=Gcaud8477.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=162bp
MSLLGPTVSIYIYHQLYNLFEKHGPLLSARFQTVVKKLNSNIDNGSESGR
LRSIPQSSRKEDNPFVLKIANEVIRITNMRLREKAVVSRIQMDDDQYELS
RRHAASDVARVAINVLEDVLKDGCGAALDSEEKLAVQSMIKGSIAQYSMN
RSWHNRLFRVM*
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mRNA from alignment at NODE_412_length_26355_cov_4.423431:23517..24002+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8477.t1 ID=Gcaud8477.t1|Name=Gcaud8477.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:23517..24002+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTACTGGGACCGACCGTATCGATATACATATATCATCAACTATA
CAACCTTTTCGAAAAACACGGTCCACTCTTAAGTGCAAGGTTTCAAACCG
TCGTCAAGAAACTCAACTCGAATATTGACAACGGATCAGAAAGCGGCCGG
CTTCGCTCTATACCGCAATCGTCTCGGAAGGAAGACAATCCATTTGTGCT
AAAGATTGCAAACGAAGTTATCCGCATTACTAATATGCGCCTCAGGGAGA
AGGCGGTTGTTTCAAGAATTCAGATGGATGATGACCAATACGAACTGAGT
CGGAGACATGCAGCTTCTGATGTCGCTCGTGTGGCCATCAACGTCCTTGA
AGACGTACTCAAAGACGGATGCGGCGCAGCTCTTGATTCAGAAGAAAAAC
TCGCCGTGCAATCCATGATTAAGGGATCAATTGCGCAGTATTCCATGAAC
CGATCATGGCATAATCGCCTTTTCCGCGTGATGTGA
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Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:23517..24002+

>Gcaud8477.t1 ID=Gcaud8477.t1|Name=Gcaud8477.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=486bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:23517..24002+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTACTGGGACCGACCGTATCGATATACATATATCATCAACTATA
CAACCTTTTCGAAAAACACGGTCCACTCTTAAGTGCAAGGTTTCAAACCG
TCGTCAAGAAACTCAACTCGAATATTGACAACGGATCAGAAAGCGGCCGG
CTTCGCTCTATACCGCAATCGTCTCGGAAGGAAGACAATCCATTTGTGCT
AAAGATTGCAAACGAAGTTATCCGCATTACTAATATGCGCCTCAGGGAGA
AGGCGGTTGTTTCAAGAATTCAGATGGATGATGACCAATACGAACTGAGT
CGGAGACATGCAGCTTCTGATGTCGCTCGTGTGGCCATCAACGTCCTTGA
AGACGTACTCAAAGACGGATGCGGCGCAGCTCTTGATTCAGAAGAAAAAC
TCGCCGTGCAATCCATGATTAAGGGATCAATTGCGCAGTATTCCATGAAC
CGATCATGGCATAATCGCCTTTTCCGCGTGATGTGA
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