Gcaud8473.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8473.t1
Unique Name	Gcaud8473.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_412_length_26355_cov_4.423431	contig	NODE_412_length_26355_cov_4.423431:17172..18716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1150626.PHAMO_230085
Preferred name	pepB
PFAMs	Peptidase_M17
Max annot lvl	204441\|Rhodospirillales
KEGG rclass	RC00096,RC00141
KEGG ko	ko:K01255
KEGG Reaction	R00899,R04951
KEGG Pathway	ko00480,ko01100,map00480,map01100
Evalue	4.14e-127
EggNOG OGs	COG0260@1\|root,COG0260@2\|Bacteria,1MUIN@1224\|Proteobacteria,2TSI6@28211\|Alphaproteobacteria,2JPVI@204441\|Rhodospirillales
EC	3.4.11.1
Description	Belongs to the peptidase M17 family
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8473	Gcaud8473	Gracilaria caudata M_176_S67 male	gene	NODE_412_length_26355_cov_4.423431 17172..18716 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8473.t1.stop1	Gcaud8473.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_412_length_26355_cov_4.423431 17172..17174 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8473.t1.CDS1	Gcaud8473.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_412_length_26355_cov_4.423431 17172..18716 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8473.t1.exon1	Gcaud8473.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_412_length_26355_cov_4.423431 17172..18716 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8473.t1.start1	Gcaud8473.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_412_length_26355_cov_4.423431 18714..18716 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8473.t1	Gcaud8473.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_412_length_26355_cov_4.423431 17172..18716 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_412_length_26355_cov_4.423431:17172..18716-
coding sequence from alignment at NODE_412_length_26355_cov_4.423431:17172..18716-

mRNA sequence

>Gcaud8473.t1 ID=Gcaud8473.t1|Name=Gcaud8473.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=515bp
MSNRLYFVPFVRLPIPCRTRATPLKQISRRRYMTLSAAKATDPGMSSVLS
ANRFRSSFSDSNGGILLDLVLKGEWDEYIERQLPVQKAWLTAHGSPTSPT
PVPAQNASIDRFVVPIKPGSQDLWRLAAAFSGLQKGKLYTINEAAGFDNG
TIELAWGLTAYAFTQYKKQDEEPEEPTRLVRRTASRSAERADVDRALHAT
YMVRDMISTPAEDFGPPNLEAAVSTLAAQHAARSSSIVGQQLLQHDFPQV
HRVGRAATSDRAPRLIELIWNQSAERRLTLVGKGVCYDTGGLSLKPTNSM
LTMSKDMGGAAHVLGLAYMIMDAKLDVCLRVLIPAVENAVGSNSYRPGDI
LTSRNGTTTLNSNSDAEGRLILADALVAATEDDPELIIDCATLTGAQRVA
LGPDIPGVFCDDDEIADQLYSLGKKVEDLVWRLPLHEPYRKLLDTPLADI
KSCSSGGLGGAITAALYLKEFVGDAKWMHIDLMAYNGTSSPGRPEGGEAM
GLRALFELVRERFS*

spliced messenger RNA

>Gcaud8473.t1 ID=Gcaud8473.t1|Name=Gcaud8473.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:17172..18716- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATCGACTTTACTTTGTTCCTTTTGTACGGCTCCCAATTCCGTG
CCGCACTCGCGCCACACCTTTAAAACAAATTTCACGGAGACGCTATATGA
CGCTTTCGGCAGCGAAGGCTACTGATCCCGGAATGTCCTCCGTACTCTCA
GCCAATCGCTTCCGATCCAGTTTCTCAGATTCTAACGGAGGAATCCTCTT
AGACCTCGTTCTGAAAGGAGAATGGGATGAGTACATTGAACGTCAACTTC
CGGTGCAGAAAGCATGGCTCACAGCCCATGGCAGCCCCACATCGCCCACG
CCGGTTCCAGCACAAAATGCATCCATAGACCGTTTTGTTGTGCCAATCAA
GCCTGGCTCACAAGATTTATGGCGACTAGCCGCCGCTTTCTCGGGTCTGC
AGAAAGGCAAGTTGTACACAATAAATGAAGCTGCTGGCTTCGACAATGGC
ACGATTGAACTTGCTTGGGGTCTCACGGCTTATGCCTTCACGCAATACAA
AAAGCAAGACGAAGAACCCGAAGAACCCACACGCCTTGTTCGTCGAACCG
CTTCGAGAAGTGCAGAACGAGCAGATGTCGACCGAGCGCTGCATGCCACG
TACATGGTGCGCGATATGATCTCAACTCCGGCAGAAGACTTTGGGCCTCC
GAACCTTGAGGCAGCAGTTTCTACTTTGGCAGCTCAGCACGCTGCACGTT
CCTCATCCATTGTAGGGCAACAACTTCTGCAACACGACTTTCCCCAAGTA
CATCGCGTTGGGCGGGCGGCCACCAGCGACAGAGCACCGAGACTCATTGA
ACTCATTTGGAACCAATCAGCAGAGAGACGCCTCACTCTTGTCGGGAAAG
GAGTTTGTTACGACACTGGTGGACTCAGCCTAAAACCAACGAATTCGATG
CTCACTATGAGCAAGGATATGGGAGGTGCTGCGCATGTGCTAGGACTTGC
CTATATGATAATGGACGCCAAATTGGATGTCTGTCTAAGAGTGCTTATTC
CTGCGGTGGAAAACGCTGTTGGAAGCAATAGTTATCGTCCTGGTGACATA
CTAACAAGTCGAAACGGTACGACAACGCTTAATTCTAATTCCGATGCCGA
AGGCCGTCTCATCTTGGCGGATGCCTTGGTTGCAGCAACAGAAGACGATC
CGGAATTAATCATCGATTGCGCAACACTAACCGGAGCGCAACGAGTGGCA
TTAGGGCCAGACATCCCCGGGGTGTTTTGTGACGATGATGAGATTGCGGA
TCAGCTGTATTCATTGGGCAAGAAAGTGGAAGATCTGGTGTGGAGATTGC
CTCTTCATGAGCCGTATCGCAAACTGCTTGACACACCGTTGGCAGATATC
AAGAGTTGCAGCAGTGGCGGGCTCGGAGGCGCCATCACAGCCGCGCTTTA
TCTGAAGGAATTCGTGGGCGATGCAAAATGGATGCACATCGATTTGATGG
CGTATAACGGCACGTCCAGCCCTGGCAGACCGGAAGGTGGCGAAGCAATG
GGGCTTCGCGCTCTTTTTGAGCTTGTTCGGGAACGCTTCTCATGA

protein sequence of Gcaud8473.t1

>Gcaud8473.t1 ID=Gcaud8473.t1|Name=Gcaud8473.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=515bp
MSNRLYFVPFVRLPIPCRTRATPLKQISRRRYMTLSAAKATDPGMSSVLS
ANRFRSSFSDSNGGILLDLVLKGEWDEYIERQLPVQKAWLTAHGSPTSPT
PVPAQNASIDRFVVPIKPGSQDLWRLAAAFSGLQKGKLYTINEAAGFDNG
TIELAWGLTAYAFTQYKKQDEEPEEPTRLVRRTASRSAERADVDRALHAT
YMVRDMISTPAEDFGPPNLEAAVSTLAAQHAARSSSIVGQQLLQHDFPQV
HRVGRAATSDRAPRLIELIWNQSAERRLTLVGKGVCYDTGGLSLKPTNSM
LTMSKDMGGAAHVLGLAYMIMDAKLDVCLRVLIPAVENAVGSNSYRPGDI
LTSRNGTTTLNSNSDAEGRLILADALVAATEDDPELIIDCATLTGAQRVA
LGPDIPGVFCDDDEIADQLYSLGKKVEDLVWRLPLHEPYRKLLDTPLADI
KSCSSGGLGGAITAALYLKEFVGDAKWMHIDLMAYNGTSSPGRPEGGEAM
GLRALFELVRERFS*

mRNA from alignment at NODE_412_length_26355_cov_4.423431:17172..18716-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8473.t1 ID=Gcaud8473.t1|Name=Gcaud8473.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:17172..18716- (Gracilaria caudata M_176_S67 male)
ATGAGCAATCGACTTTACTTTGTTCCTTTTGTACGGCTCCCAATTCCGTG
CCGCACTCGCGCCACACCTTTAAAACAAATTTCACGGAGACGCTATATGA
CGCTTTCGGCAGCGAAGGCTACTGATCCCGGAATGTCCTCCGTACTCTCA
GCCAATCGCTTCCGATCCAGTTTCTCAGATTCTAACGGAGGAATCCTCTT
AGACCTCGTTCTGAAAGGAGAATGGGATGAGTACATTGAACGTCAACTTC
CGGTGCAGAAAGCATGGCTCACAGCCCATGGCAGCCCCACATCGCCCACG
CCGGTTCCAGCACAAAATGCATCCATAGACCGTTTTGTTGTGCCAATCAA
GCCTGGCTCACAAGATTTATGGCGACTAGCCGCCGCTTTCTCGGGTCTGC
AGAAAGGCAAGTTGTACACAATAAATGAAGCTGCTGGCTTCGACAATGGC
ACGATTGAACTTGCTTGGGGTCTCACGGCTTATGCCTTCACGCAATACAA
AAAGCAAGACGAAGAACCCGAAGAACCCACACGCCTTGTTCGTCGAACCG
CTTCGAGAAGTGCAGAACGAGCAGATGTCGACCGAGCGCTGCATGCCACG
TACATGGTGCGCGATATGATCTCAACTCCGGCAGAAGACTTTGGGCCTCC
GAACCTTGAGGCAGCAGTTTCTACTTTGGCAGCTCAGCACGCTGCACGTT
CCTCATCCATTGTAGGGCAACAACTTCTGCAACACGACTTTCCCCAAGTA
CATCGCGTTGGGCGGGCGGCCACCAGCGACAGAGCACCGAGACTCATTGA
ACTCATTTGGAACCAATCAGCAGAGAGACGCCTCACTCTTGTCGGGAAAG
GAGTTTGTTACGACACTGGTGGACTCAGCCTAAAACCAACGAATTCGATG
CTCACTATGAGCAAGGATATGGGAGGTGCTGCGCATGTGCTAGGACTTGC
CTATATGATAATGGACGCCAAATTGGATGTCTGTCTAAGAGTGCTTATTC
CTGCGGTGGAAAACGCTGTTGGAAGCAATAGTTATCGTCCTGGTGACATA
CTAACAAGTCGAAACGGTACGACAACGCTTAATTCTAATTCCGATGCCGA
AGGCCGTCTCATCTTGGCGGATGCCTTGGTTGCAGCAACAGAAGACGATC
CGGAATTAATCATCGATTGCGCAACACTAACCGGAGCGCAACGAGTGGCA
TTAGGGCCAGACATCCCCGGGGTGTTTTGTGACGATGATGAGATTGCGGA
TCAGCTGTATTCATTGGGCAAGAAAGTGGAAGATCTGGTGTGGAGATTGC
CTCTTCATGAGCCGTATCGCAAACTGCTTGACACACCGTTGGCAGATATC
AAGAGTTGCAGCAGTGGCGGGCTCGGAGGCGCCATCACAGCCGCGCTTTA
TCTGAAGGAATTCGTGGGCGATGCAAAATGGATGCACATCGATTTGATGG
CGTATAACGGCACGTCCAGCCCTGGCAGACCGGAAGGTGGCGAAGCAATG
GGGCTTCGCGCTCTTTTTGAGCTTGTTCGGGAACGCTTCTCATGA

Coding sequence (CDS) from alignment at NODE_412_length_26355_cov_4.423431:17172..18716-

>Gcaud8473.t1 ID=Gcaud8473.t1|Name=Gcaud8473.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1545bp|location=Sequence derived from alignment at NODE_412_length_26355_cov_4.423431:17172..18716- (Gracilaria caudata M_176_S67 male)
ATGAGCAATCGACTTTACTTTGTTCCTTTTGTACGGCTCCCAATTCCGTG
CCGCACTCGCGCCACACCTTTAAAACAAATTTCACGGAGACGCTATATGA
CGCTTTCGGCAGCGAAGGCTACTGATCCCGGAATGTCCTCCGTACTCTCA
GCCAATCGCTTCCGATCCAGTTTCTCAGATTCTAACGGAGGAATCCTCTT
AGACCTCGTTCTGAAAGGAGAATGGGATGAGTACATTGAACGTCAACTTC
CGGTGCAGAAAGCATGGCTCACAGCCCATGGCAGCCCCACATCGCCCACG
CCGGTTCCAGCACAAAATGCATCCATAGACCGTTTTGTTGTGCCAATCAA
GCCTGGCTCACAAGATTTATGGCGACTAGCCGCCGCTTTCTCGGGTCTGC
AGAAAGGCAAGTTGTACACAATAAATGAAGCTGCTGGCTTCGACAATGGC
ACGATTGAACTTGCTTGGGGTCTCACGGCTTATGCCTTCACGCAATACAA
AAAGCAAGACGAAGAACCCGAAGAACCCACACGCCTTGTTCGTCGAACCG
CTTCGAGAAGTGCAGAACGAGCAGATGTCGACCGAGCGCTGCATGCCACG
TACATGGTGCGCGATATGATCTCAACTCCGGCAGAAGACTTTGGGCCTCC
GAACCTTGAGGCAGCAGTTTCTACTTTGGCAGCTCAGCACGCTGCACGTT
CCTCATCCATTGTAGGGCAACAACTTCTGCAACACGACTTTCCCCAAGTA
CATCGCGTTGGGCGGGCGGCCACCAGCGACAGAGCACCGAGACTCATTGA
ACTCATTTGGAACCAATCAGCAGAGAGACGCCTCACTCTTGTCGGGAAAG
GAGTTTGTTACGACACTGGTGGACTCAGCCTAAAACCAACGAATTCGATG
CTCACTATGAGCAAGGATATGGGAGGTGCTGCGCATGTGCTAGGACTTGC
CTATATGATAATGGACGCCAAATTGGATGTCTGTCTAAGAGTGCTTATTC
CTGCGGTGGAAAACGCTGTTGGAAGCAATAGTTATCGTCCTGGTGACATA
CTAACAAGTCGAAACGGTACGACAACGCTTAATTCTAATTCCGATGCCGA
AGGCCGTCTCATCTTGGCGGATGCCTTGGTTGCAGCAACAGAAGACGATC
CGGAATTAATCATCGATTGCGCAACACTAACCGGAGCGCAACGAGTGGCA
TTAGGGCCAGACATCCCCGGGGTGTTTTGTGACGATGATGAGATTGCGGA
TCAGCTGTATTCATTGGGCAAGAAAGTGGAAGATCTGGTGTGGAGATTGC
CTCTTCATGAGCCGTATCGCAAACTGCTTGACACACCGTTGGCAGATATC
AAGAGTTGCAGCAGTGGCGGGCTCGGAGGCGCCATCACAGCCGCGCTTTA
TCTGAAGGAATTCGTGGGCGATGCAAAATGGATGCACATCGATTTGATGG
CGTATAACGGCACGTCCAGCCCTGGCAGACCGGAAGGTGGCGAAGCAATG
GGGCTTCGCGCTCTTTTTGAGCTTGTTCGGGAACGCTTCTCATGA