Gcaud2729.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2729.t1
Unique NameGcaud2729.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4106_length_2573_cov_5.608380contigNODE_4106_length_2573_cov_5.608380:2123..2440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog596151.DesfrDRAFT_0369
Preferred namePREP
PFAMsM16C_assoc,Peptidase_M16,Peptidase_M16_C
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K06972
Evalue6.93e-32
EggNOG OGsCOG1026@1|root,COG1026@2|Bacteria,1MVDJ@1224|Proteobacteria,42MRG@68525|delta/epsilon subdivisions,2WJ5Q@28221|Deltaproteobacteria,2M9EM@213115|Desulfovibrionales
DescriptionPFAM Peptidase M16C associated
COG categoryS
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2729Gcaud2729Gracilaria caudata M_176_S67 malegeneNODE_4106_length_2573_cov_5.608380 2123..2440 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2729.t1.start1Gcaud2729.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4106_length_2573_cov_5.608380 2123..2125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2729.t1.CDS1Gcaud2729.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4106_length_2573_cov_5.608380 2123..2440 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2729.t1.exon1Gcaud2729.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4106_length_2573_cov_5.608380 2123..2440 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2729.t1.stop1Gcaud2729.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4106_length_2573_cov_5.608380 2438..2440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2729.t1Gcaud2729.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4106_length_2573_cov_5.608380 2123..2440 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2729.t1 ID=Gcaud2729.t1|Name=Gcaud2729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=106bp
MNHILLSLSSSLFRKALIDSQLGEDVVGGGLETDLRQMKFSVGLKGITKD
TAPKMEKVVLDVLRDVQQNGFPERMIDASLNTIEFRLRENNTGSFPKGLL
LMLRS*
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spliced messenger RNA

>Gcaud2729.t1 ID=Gcaud2729.t1|Name=Gcaud2729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:2123..2440+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCATATTCTGCTCTCATTGTCATCTTCTCTCTTTCGAAAGGCCTT
GATTGATTCTCAGCTTGGGGAAGATGTGGTGGGCGGAGGGTTGGAGACGG
ACCTGCGCCAAATGAAATTCTCTGTTGGCTTGAAAGGAATTACCAAAGAT
ACCGCTCCCAAGATGGAGAAGGTTGTCTTGGATGTATTGAGAGACGTACA
ACAAAATGGTTTCCCTGAAAGAATGATTGACGCTAGCCTCAACACAATCG
AATTCCGATTGCGAGAGAATAATACCGGCTCATTTCCAAAGGGGCTTTTG
CTCATGTTGCGATCTTGA
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protein sequence of Gcaud2729.t1

>Gcaud2729.t1 ID=Gcaud2729.t1|Name=Gcaud2729.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=106bp
MNHILLSLSSSLFRKALIDSQLGEDVVGGGLETDLRQMKFSVGLKGITKD
TAPKMEKVVLDVLRDVQQNGFPERMIDASLNTIEFRLRENNTGSFPKGLL
LMLRS*
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mRNA from alignment at NODE_4106_length_2573_cov_5.608380:2123..2440+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2729.t1 ID=Gcaud2729.t1|Name=Gcaud2729.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=318bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:2123..2440+ (Gracilaria caudata M_176_S67 male)
ATGAATCATATTCTGCTCTCATTGTCATCTTCTCTCTTTCGAAAGGCCTT
GATTGATTCTCAGCTTGGGGAAGATGTGGTGGGCGGAGGGTTGGAGACGG
ACCTGCGCCAAATGAAATTCTCTGTTGGCTTGAAAGGAATTACCAAAGAT
ACCGCTCCCAAGATGGAGAAGGTTGTCTTGGATGTATTGAGAGACGTACA
ACAAAATGGTTTCCCTGAAAGAATGATTGACGCTAGCCTCAACACAATCG
AATTCCGATTGCGAGAGAATAATACCGGCTCATTTCCAAAGGGGCTTTTG
CTCATGTTGCGATCTTGA
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Coding sequence (CDS) from alignment at NODE_4106_length_2573_cov_5.608380:2123..2440+

>Gcaud2729.t1 ID=Gcaud2729.t1|Name=Gcaud2729.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=318bp|location=Sequence derived from alignment at NODE_4106_length_2573_cov_5.608380:2123..2440+ (Gracilaria caudata M_176_S67 male)
ATGAATCATATTCTGCTCTCATTGTCATCTTCTCTCTTTCGAAAGGCCTT
GATTGATTCTCAGCTTGGGGAAGATGTGGTGGGCGGAGGGTTGGAGACGG
ACCTGCGCCAAATGAAATTCTCTGTTGGCTTGAAAGGAATTACCAAAGAT
ACCGCTCCCAAGATGGAGAAGGTTGTCTTGGATGTATTGAGAGACGTACA
ACAAAATGGTTTCCCTGAAAGAATGATTGACGCTAGCCTCAACACAATCG
AATTCCGATTGCGAGAGAATAATACCGGCTCATTTCCAAAGGGGCTTTTG
CTCATGTTGCGATCTTGA
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