Gcaud2723.t3 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2723.t3
Unique NameGcaud2723.t3
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_409_length_26400_cov_4.606408contigNODE_409_length_26400_cov_4.606408:19511..20395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2723Gcaud2723Gracilaria caudata M_176_S67 malegeneNODE_409_length_26400_cov_4.606408 19511..20845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3Gcaud2723.t3Gracilaria caudata M_176_S67 malepolypeptideNODE_409_length_26400_cov_4.606408 19511..20395 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3.stop1Gcaud2723.t3.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_409_length_26400_cov_4.606408 19511..19513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3.CDS1Gcaud2723.t3.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 19511..19811 -
Gcaud2723.t3.CDS2Gcaud2723.t3.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 19892..19927 -
Gcaud2723.t3.CDS3Gcaud2723.t3.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20043..20142 -
Gcaud2723.t3.CDS4Gcaud2723.t3.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20377..20395 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3.exon1Gcaud2723.t3.exon1Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 19511..19811 -
Gcaud2723.t3.exon2Gcaud2723.t3.exon2Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 19892..19927 -
Gcaud2723.t3.exon3Gcaud2723.t3.exon3Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20043..20142 -
Gcaud2723.t3.exon4Gcaud2723.t3.exon4Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20377..20395 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3.intron1Gcaud2723.t3.intron1Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 19812..19891 -
Gcaud2723.t3.intron2Gcaud2723.t3.intron2Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 19928..20042 -
Gcaud2723.t3.intron3Gcaud2723.t3.intron3Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 20143..20376 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t3.start1Gcaud2723.t3.start1Gracilaria caudata M_176_S67 malestart_codonNODE_409_length_26400_cov_4.606408 20393..20395 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2723.t3 ID=Gcaud2723.t3|Name=Gcaud2723.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=152bp
MVSRASSVQDGASKGSKKMKFTIDFPPERSESRAGTLVSRAVASISLTMN
ACTLRQAKSLDSDEDGVVVLVNCGLDRLSWFAKRGFAKYIDEFVAAYYLK
AVGNGWLLKSGASPWRTFVLLKGTLENISETNDKPKLVDVETQIRVANAR
A*
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spliced messenger RNA

>Gcaud2723.t3 ID=Gcaud2723.t3|Name=Gcaud2723.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=456bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19511..20395- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCAGGGCGAGCTCAGTGCAAGATGGCGCAAGTAAGGGCTCAAA
AAAGATGAAGTTTACGATCGACTTCCCTCCAGAACGGTCCGAAAGCCGAG
CTGGAACGCTTGTATCCAGGGCGGTGGCGAGTATCTCACTGACGATGAAT
GCATGCACATTGCGTCAAGCGAAATCGCTGGACAGCGATGAAGACGGCGT
GGTTGTTCTGGTGAACTGCGGACTCGATCGGCTATCGTGGTTTGCCAAGC
GCGGGTTCGCTAAGTACATCGACGAGTTCGTCGCCGCGTACTACCTCAAA
GCGGTGGGAAACGGTTGGCTACTCAAGAGCGGAGCATCGCCGTGGCGCAC
GTTCGTGCTACTCAAGGGCACGCTTGAGAACATCAGCGAGACGAACGATA
AGCCGAAGTTGGTCGACGTCGAAACGCAAATCCGCGTCGCCAATGCGCGT
GCTTGA
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protein sequence of Gcaud2723.t3

>Gcaud2723.t3 ID=Gcaud2723.t3|Name=Gcaud2723.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=152bp
MVSRASSVQDGASKGSKKMKFTIDFPPERSESRAGTLVSRAVASISLTMN
ACTLRQAKSLDSDEDGVVVLVNCGLDRLSWFAKRGFAKYIDEFVAAYYLK
AVGNGWLLKSGASPWRTFVLLKGTLENISETNDKPKLVDVETQIRVANAR
A*
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mRNA from alignment at NODE_409_length_26400_cov_4.606408:19511..20395-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2723.t3 ID=Gcaud2723.t3|Name=Gcaud2723.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=885bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19511..20395- (Gracilaria caudata M_176_S67 male)
ATGGTTTCCAGGGCGAGCTGTACGTTCGTGCCGTCAATCACCTCGAAAAG
CGCTTCATGGAGTGCGCCCCGCTTCCAATTGACACGCTGTCGTGCATCAA
AGCGTGATGGATCCATATGGCGAACGCCAAGAAGTTGTGCACCGAACACG
TCGCTGTCGCTTCCTTTGTTCGATGACTACCGCGGTGCACGGGGCATATT
TGCCGTATCTCATGCAAAGGTGCTTTCTCAATGTGTGCATGCGTTACAGG
AAGCAGTGCAAGATGGCGCAAGTAAGGGCTCAAAAAAGATGAAGTTTACG
ATCGACTTCCCTCCAGAACGGTCCGAAAGCCGAGCTGGAACGCTTGTATC
CAGGTTTGAAAATAACCTCAACTTCACGGAGAAGCTTCTTGCTGGGCTGG
GAGTAGCTTTGAAACAGTGTGAACGCGTTGGCGGTGAGGTAAATATCTGT
GACAATATCAATCCGCAGGGCGGTGGCGAGTATCTCACTGACGATGAATG
CATGGTAGGTTTTCGAACGAGACAATGCGCCAGGTTACAAGCACGCTCAT
TGCTGATTCTGTTCAATGCGGGCATGGATGGCAGCACATTGCGTCAAGCG
AAATCGCTGGACAGCGATGAAGACGGCGTGGTTGTTCTGGTGAACTGCGG
ACTCGATCGGCTATCGTGGTTTGCCAAGCGCGGGTTCGCTAAGTACATCG
ACGAGTTCGTCGCCGCGTACTACCTCAAAGCGGTGGGAAACGGTTGGCTA
CTCAAGAGCGGAGCATCGCCGTGGCGCACGTTCGTGCTACTCAAGGGCAC
GCTTGAGAACATCAGCGAGACGAACGATAAGCCGAAGTTGGTCGACGTCG
AAACGCAAATCCGCGTCGCCAATGCGCGTGCTTGA
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Coding sequence (CDS) from alignment at NODE_409_length_26400_cov_4.606408:19511..20395-

>Gcaud2723.t3 ID=Gcaud2723.t3|Name=Gcaud2723.t3|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=456bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19511..20395- (Gracilaria caudata M_176_S67 male)
ATGGTTTCCAGGGCGAGCTCAGTGCAAGATGGCGCAAGTAAGGGCTCAAA
AAAGATGAAGTTTACGATCGACTTCCCTCCAGAACGGTCCGAAAGCCGAG
CTGGAACGCTTGTATCCAGGGCGGTGGCGAGTATCTCACTGACGATGAAT
GCATGCACATTGCGTCAAGCGAAATCGCTGGACAGCGATGAAGACGGCGT
GGTTGTTCTGGTGAACTGCGGACTCGATCGGCTATCGTGGTTTGCCAAGC
GCGGGTTCGCTAAGTACATCGACGAGTTCGTCGCCGCGTACTACCTCAAA
GCGGTGGGAAACGGTTGGCTACTCAAGAGCGGAGCATCGCCGTGGCGCAC
GTTCGTGCTACTCAAGGGCACGCTTGAGAACATCAGCGAGACGAACGATA
AGCCGAAGTTGGTCGACGTCGAAACGCAAATCCGCGTCGCCAATGCGCGT
GCTTGA
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