Gcaud2723.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2723.t2
Unique NameGcaud2723.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_409_length_26400_cov_4.606408contigNODE_409_length_26400_cov_4.606408:19840..20845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2723Gcaud2723Gracilaria caudata M_176_S67 malegeneNODE_409_length_26400_cov_4.606408 19511..20845 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2.stop1Gcaud2723.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_409_length_26400_cov_4.606408 19840..19842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2.CDS1Gcaud2723.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 19840..19887 -
Gcaud2723.t2.CDS2Gcaud2723.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 19958..20066 -
Gcaud2723.t2.CDS3Gcaud2723.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20141..20146 -
Gcaud2723.t2.CDS4Gcaud2723.t2.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20377..20384 -
Gcaud2723.t2.CDS5Gcaud2723.t2.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20449..20496 -
Gcaud2723.t2.CDS6Gcaud2723.t2.CDS6Gracilaria caudata M_176_S67 maleCDSNODE_409_length_26400_cov_4.606408 20582..20845 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2.exon1Gcaud2723.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 19840..19887 -
Gcaud2723.t2.exon2Gcaud2723.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 19958..20066 -
Gcaud2723.t2.exon3Gcaud2723.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20141..20146 -
Gcaud2723.t2.exon4Gcaud2723.t2.exon4Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20377..20384 -
Gcaud2723.t2.exon5Gcaud2723.t2.exon5Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20449..20496 -
Gcaud2723.t2.exon6Gcaud2723.t2.exon6Gracilaria caudata M_176_S67 maleexonNODE_409_length_26400_cov_4.606408 20582..20845 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2.intron1Gcaud2723.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 19888..19957 -
Gcaud2723.t2.intron2Gcaud2723.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 20067..20140 -
Gcaud2723.t2.intron3Gcaud2723.t2.intron3Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 20147..20376 -
Gcaud2723.t2.intron4Gcaud2723.t2.intron4Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 20385..20448 -
Gcaud2723.t2.intron5Gcaud2723.t2.intron5Gracilaria caudata M_176_S67 maleintronNODE_409_length_26400_cov_4.606408 20497..20581 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2.start1Gcaud2723.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_409_length_26400_cov_4.606408 20843..20845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2723.t2Gcaud2723.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_409_length_26400_cov_4.606408 19840..20845 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2723.t2 ID=Gcaud2723.t2|Name=Gcaud2723.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MNASMEVDLLRDIYDWGNARAIQATTQLVKTSGGSKKERIKILVQDLIPL
LKTDRGQWLGAAAGATATQRGCNICKCRVTLRLGDGKLARTPTLFIPPRK
ATSMGELKHRAGTLVSRFENNLNFTEKLLAGLGVALKQCERVGGEVFERD
NAPGYKHAHC*
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spliced messenger RNA

>Gcaud2723.t2 ID=Gcaud2723.t2|Name=Gcaud2723.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19840..20845- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCTCGATGGAAGTGGACCTGTTGAGAGATATCTATGACTGGGG
AAATGCTCGAGCCATACAGGCTACCACCCAACTTGTGAAAACTTCAGGGG
GAAGCAAGAAAGAACGGATCAAAATCCTCGTCCAAGATCTTATACCGCTG
TTAAAAACTGACCGAGGCCAGTGGCTTGGAGCGGCTGCTGGTGCCACAGC
AACACAAAGAGGATGTAACATTTGCAAGTGCAGAGTAACTCTACGGTTGG
GTGATGGAAAACTCGCGCGCACACCAACACTATTCATTCCTCCTCGGAAA
GCTACGAGCATGGGCGAGCTGAAGCACCGAGCTGGAACGCTTGTATCCAG
GTTTGAAAATAACCTCAACTTCACGGAGAAGCTTCTTGCTGGGCTGGGAG
TAGCTTTGAAACAGTGTGAACGCGTTGGCGGTGAGGTTTTCGAACGAGAC
AATGCGCCAGGTTACAAGCACGCTCATTGCTGA
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protein sequence of Gcaud2723.t2

>Gcaud2723.t2 ID=Gcaud2723.t2|Name=Gcaud2723.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MNASMEVDLLRDIYDWGNARAIQATTQLVKTSGGSKKERIKILVQDLIPL
LKTDRGQWLGAAAGATATQRGCNICKCRVTLRLGDGKLARTPTLFIPPRK
ATSMGELKHRAGTLVSRFENNLNFTEKLLAGLGVALKQCERVGGEVFERD
NAPGYKHAHC*
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mRNA from alignment at NODE_409_length_26400_cov_4.606408:19840..20845-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2723.t2 ID=Gcaud2723.t2|Name=Gcaud2723.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1006bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19840..20845- (Gracilaria caudata M_176_S67 male)
ATGAATGCCTCGATGGAAGTGGACCTGTTGAGAGATATCTATGACTGGGG
AAATGCTCGAGCCATACAGGCTACCACCCAACTTGTGAAAACTTCAGGGG
GAAGCAAGAAAGAACGGATCAAAATCCTCGTCCAAGATCTTATACCGCTG
TTAAAAACTGACCGAGGCCAGTGGCTTGGAGCGGCTGCTGGTGCCACAGC
AACACAAAGAGGATGTAACATTTGCAAGTGCAGAGTAACTCTACGGTTGG
GTGATGGAAAACTCGTACGTGTCCATACAGTATGAGATATGCGAGATTTT
TGGAGGAGGGAGCAAACACTGACCCCGAAGCCCAATGTGTGGTGCGTAGG
CGCGCACACCAACACTATTCATTCCTCCTCGGAAAGCTACGAGCATGGTG
CGATGAAGCACGTATCAGCATCGAAACACCATAGCAATTCTTCCCAGACA
ATGGTTTCCAGGGCGAGCTGTACGTTCGTGCCGTCAATCACCTCGAAAAG
CGCTTCATGGAGTGCGCCCCGCTTCCAATTGACACGCTGTCGTGCATCAA
AGCGTGATGGATCCATATGGCGAACGCCAAGAAGTTGTGCACCGAACACG
TCGCTGTCGCTTCCTTTGTTCGATGACTACCGCGGTGCACGGGGCATATT
TGCCGTATCTCATGCAAAGGTGCTTTCTCAATGTGTGCATGCGTTACAGG
AAGCAGTGCAAGATGGCGCAAGTAAGGGCTCAAAAAAGATGAAGTTTACG
ATCGACTTCCCTCCAGAACGGTCCGAAAGCCGAGCTGGAACGCTTGTATC
CAGGTTTGAAAATAACCTCAACTTCACGGAGAAGCTTCTTGCTGGGCTGG
GAGTAGCTTTGAAACAGTGTGAACGCGTTGGCGGTGAGGTAAATATCTGT
GACAATATCAATCCGCAGGGCGGTGGCGAGTATCTCACTGACGATGAATG
CATGGTAGGTTTTCGAACGAGACAATGCGCCAGGTTACAAGCACGCTCAT
TGCTGA
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Coding sequence (CDS) from alignment at NODE_409_length_26400_cov_4.606408:19840..20845-

>Gcaud2723.t2 ID=Gcaud2723.t2|Name=Gcaud2723.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:19840..20845- (Gracilaria caudata M_176_S67 male)
ATGAATGCCTCGATGGAAGTGGACCTGTTGAGAGATATCTATGACTGGGG
AAATGCTCGAGCCATACAGGCTACCACCCAACTTGTGAAAACTTCAGGGG
GAAGCAAGAAAGAACGGATCAAAATCCTCGTCCAAGATCTTATACCGCTG
TTAAAAACTGACCGAGGCCAGTGGCTTGGAGCGGCTGCTGGTGCCACAGC
AACACAAAGAGGATGTAACATTTGCAAGTGCAGAGTAACTCTACGGTTGG
GTGATGGAAAACTCGCGCGCACACCAACACTATTCATTCCTCCTCGGAAA
GCTACGAGCATGGGCGAGCTGAAGCACCGAGCTGGAACGCTTGTATCCAG
GTTTGAAAATAACCTCAACTTCACGGAGAAGCTTCTTGCTGGGCTGGGAG
TAGCTTTGAAACAGTGTGAACGCGTTGGCGGTGAGGTTTTCGAACGAGAC
AATGCGCCAGGTTACAAGCACGCTCATTGCTGA
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