Gcaud8391.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8391.t1
Unique NameGcaud8391.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:22601..23276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8391Gcaud8391Gracilaria caudata M_176_S67 malegeneNODE_406_length_26511_cov_4.568963 22601..23276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1Gcaud8391.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_406_length_26511_cov_4.568963 22601..23276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1.start1Gcaud8391.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_406_length_26511_cov_4.568963 22601..22603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1.CDS1Gcaud8391.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 22601..22610 +
Gcaud8391.t1.CDS2Gcaud8391.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 22710..22784 +
Gcaud8391.t1.CDS3Gcaud8391.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 22849..23276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1.exon1Gcaud8391.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 22601..22610 +
Gcaud8391.t1.exon2Gcaud8391.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 22710..22784 +
Gcaud8391.t1.exon3Gcaud8391.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 22849..23276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1.intron1Gcaud8391.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_406_length_26511_cov_4.568963 22611..22709 +
Gcaud8391.t1.intron2Gcaud8391.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_406_length_26511_cov_4.568963 22785..22848 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8391.t1.stop1Gcaud8391.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_406_length_26511_cov_4.568963 23274..23276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8391.t1 ID=Gcaud8391.t1|Name=Gcaud8391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=171bp
LEIDSEGLVLPLLCVSCPIWPREDFCMVYDGLKTVFQSEAGSLHAAKLEM
VMNMCYVVRLRNLHNLSSTIGLQLSAYLSPTKVLGLKRIPKRYATCNTAR
SRLIYRRDATQFYGATCPVCSREQAHPLNCDEVHRMSTPPRGRICPTLGQ
SVRMGKDYEIIHFLDTLSIH*
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spliced messenger RNA

>Gcaud8391.t1 ID=Gcaud8391.t1|Name=Gcaud8391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22601..23276+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAGATAGATTCAGAGGGGCTGGTGTTGCCATTATTATGTGTTTCTTG
TCCCATATGGCCCCGTGAAGACTTCTGCATGGTGTATGATGGCTTGAAGA
CAGTTTTCCAGAGTGAAGCAGGATCCTTGCATGCGGCCAAACTTGAGATG
GTCATGAACATGTGCTACGTGGTTAGACTGCGCAACCTCCACAATCTATC
ATCTACCATAGGTCTGCAGCTTTCTGCGTATCTGAGCCCAACTAAAGTAC
TTGGGTTGAAACGCATCCCGAAAAGGTACGCTACATGCAATACAGCAAGG
TCAAGGCTGATTTATCGTCGTGACGCCACGCAGTTTTATGGAGCGACCTG
CCCGGTGTGCAGCCGAGAACAGGCTCATCCGCTGAATTGTGATGAAGTTC
ATCGCATGTCAACACCACCGAGAGGCCGAATATGCCCCACCTTGGGGCAA
TCTGTTCGAATGGGAAAGGACTATGAAATCATTCACTTTCTCGATACTCT
CAGTATACACTAG
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protein sequence of Gcaud8391.t1

>Gcaud8391.t1 ID=Gcaud8391.t1|Name=Gcaud8391.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=171bp
LEIDSEGLVLPLLCVSCPIWPREDFCMVYDGLKTVFQSEAGSLHAAKLEM
VMNMCYVVRLRNLHNLSSTIGLQLSAYLSPTKVLGLKRIPKRYATCNTAR
SRLIYRRDATQFYGATCPVCSREQAHPLNCDEVHRMSTPPRGRICPTLGQ
SVRMGKDYEIIHFLDTLSIH*
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mRNA from alignment at NODE_406_length_26511_cov_4.568963:22601..23276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8391.t1 ID=Gcaud8391.t1|Name=Gcaud8391.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=676bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22601..23276+ (Gracilaria caudata M_176_S67 male)
TTGGAGATAGGTACGCTTTCAATTTGATCCAAGGTTTTCGCTCGTGACAA
GAGTGTCTTTTTTCTCATCAGTTTCGCTTTGTTTCTGATCCTCCTACCGA
TGCTCGCAGATTCAGAGGGGCTGGTGTTGCCATTATTATGTGTTTCTTGT
CCCATATGGCCCCGTGAAGACTTCTGCATGGTGTGTATGCTTGGGAAGAC
AAGACTTCCTCCTGCGAGCTCGACTTATATGTCAGAATTCGATGTAAGAT
GATGGCTTGAAGACAGTTTTCCAGAGTGAAGCAGGATCCTTGCATGCGGC
CAAACTTGAGATGGTCATGAACATGTGCTACGTGGTTAGACTGCGCAACC
TCCACAATCTATCATCTACCATAGGTCTGCAGCTTTCTGCGTATCTGAGC
CCAACTAAAGTACTTGGGTTGAAACGCATCCCGAAAAGGTACGCTACATG
CAATACAGCAAGGTCAAGGCTGATTTATCGTCGTGACGCCACGCAGTTTT
ATGGAGCGACCTGCCCGGTGTGCAGCCGAGAACAGGCTCATCCGCTGAAT
TGTGATGAAGTTCATCGCATGTCAACACCACCGAGAGGCCGAATATGCCC
CACCTTGGGGCAATCTGTTCGAATGGGAAAGGACTATGAAATCATTCACT
TTCTCGATACTCTCAGTATACACTAG
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Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:22601..23276+

>Gcaud8391.t1 ID=Gcaud8391.t1|Name=Gcaud8391.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=513bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:22601..23276+ (Gracilaria caudata M_176_S67 male)
TTGGAGATAGATTCAGAGGGGCTGGTGTTGCCATTATTATGTGTTTCTTG
TCCCATATGGCCCCGTGAAGACTTCTGCATGGTGTATGATGGCTTGAAGA
CAGTTTTCCAGAGTGAAGCAGGATCCTTGCATGCGGCCAAACTTGAGATG
GTCATGAACATGTGCTACGTGGTTAGACTGCGCAACCTCCACAATCTATC
ATCTACCATAGGTCTGCAGCTTTCTGCGTATCTGAGCCCAACTAAAGTAC
TTGGGTTGAAACGCATCCCGAAAAGGTACGCTACATGCAATACAGCAAGG
TCAAGGCTGATTTATCGTCGTGACGCCACGCAGTTTTATGGAGCGACCTG
CCCGGTGTGCAGCCGAGAACAGGCTCATCCGCTGAATTGTGATGAAGTTC
ATCGCATGTCAACACCACCGAGAGGCCGAATATGCCCCACCTTGGGGCAA
TCTGTTCGAATGGGAAAGGACTATGAAATCATTCACTTTCTCGATACTCT
CAGTATACACTAG
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