Gcaud8392.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8392.t1
Unique Name	Gcaud8392.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	427

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:23525..24994 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8392	Gcaud8392	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 23525..24994 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1	Gcaud8392.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 23525..24994 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1.stop1	Gcaud8392.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 23525..23527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1.CDS1	Gcaud8392.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 23525..23561 -
Gcaud8392.t1.CDS2	Gcaud8392.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 23644..23646 -
Gcaud8392.t1.CDS3	Gcaud8392.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 23754..24994 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1.exon1	Gcaud8392.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 23525..23561 -
Gcaud8392.t1.exon2	Gcaud8392.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 23644..23646 -
Gcaud8392.t1.exon3	Gcaud8392.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 23754..24994 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1.intron1	Gcaud8392.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 23562..23643 -
Gcaud8392.t1.intron2	Gcaud8392.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 23647..23753 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8392.t1.start1	Gcaud8392.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 24992..24994 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:23525..24994-
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:23525..24994-

mRNA sequence

>Gcaud8392.t1 ID=Gcaud8392.t1|Name=Gcaud8392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=427bp
MQKSLATNAHLPYSKWSQHRAENGLIYLSHPVTQEVKWLWSRHNDPNTSN
DYLVNTVTGDRQWVTKENEHLCPVPVDKSGNQQKANNSKPTSNAPTNPFT
EKRSQRSKPPNAVKRLPNAESPEYREIAAPKSLGLTADEVLMLVPETGRR
YVFNKKTNSSRWLPDIPPDTIPAPSTQRTFLGRAKAKAADNVDNDIHPHL
REKTKTPFFDPSDPPVADHGLSTKRSSDTPSTAHKLSHSHIAAHNSTNIP
STQPPTNGAHPTRQSPTNQSRAATWRPTANMSSSSRETAPASPSVAAAEQ
TASSQPRKEVNPITEKLNALESVRGNINKITASGKYDMNQFRRLPTMRGK
EEQLEEGSQRLLELEEYLTQQMLKVDAVESEGNQRVRAKRKETVNTILSL
TDEIEQLRTKIKNLSYIKNPGSLANE*

spliced messenger RNA

>Gcaud8392.t1 ID=Gcaud8392.t1|Name=Gcaud8392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1281bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:23525..24994- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAGTCCTTAGCAACCAACGCCCACCTGCCATACTCAAAGTGGTC
CCAGCACCGTGCCGAAAACGGCCTCATTTATCTCTCGCATCCCGTTACCC
AAGAAGTCAAATGGCTCTGGTCCCGACACAATGATCCTAACACAAGCAAC
GACTATCTCGTCAACACCGTTACTGGCGACCGTCAGTGGGTCACCAAGGA
AAACGAACACCTCTGTCCAGTTCCGGTGGACAAATCTGGCAATCAGCAAA
AAGCCAACAATTCAAAACCTACATCCAATGCTCCCACCAACCCTTTCACT
GAGAAGCGTTCGCAGCGAAGTAAACCACCCAACGCCGTAAAACGGCTGCC
TAACGCGGAGAGCCCCGAATATCGCGAGATAGCTGCTCCCAAGTCACTCG
GTCTTACAGCGGATGAAGTGCTCATGCTTGTTCCCGAAACCGGCCGCCGA
TACGTATTCAACAAGAAGACTAATAGTTCACGATGGCTTCCAGATATACC
TCCGGACACCATTCCGGCCCCTTCGACACAGCGAACATTTTTGGGGCGCG
CCAAGGCCAAGGCTGCTGACAACGTTGACAACGACATTCATCCACACCTA
CGTGAAAAGACAAAGACTCCATTTTTTGACCCAAGCGATCCTCCCGTGGC
GGACCACGGCTTATCGACCAAGCGTTCCAGCGATACTCCATCCACGGCCC
ACAAGCTCTCTCATTCCCACATCGCTGCACATAACTCTACTAATATCCCC
TCAACGCAGCCACCAACCAACGGTGCGCATCCGACCCGGCAGTCTCCAAC
GAACCAGAGCAGGGCGGCAACTTGGAGGCCTACAGCTAACATGAGTTCGT
CAAGTCGGGAAACTGCGCCAGCTTCTCCAAGCGTAGCTGCTGCCGAGCAA
ACTGCTTCGAGTCAGCCCCGAAAAGAAGTGAACCCAATAACAGAAAAGCT
CAACGCTTTGGAATCTGTACGTGGCAATATCAATAAGATTACCGCATCTG
GCAAATACGACATGAATCAATTCCGTCGGTTGCCTACAATGCGAGGGAAG
GAAGAGCAACTCGAAGAAGGATCCCAACGTCTCCTAGAGCTGGAAGAATA
TCTGACACAGCAAATGCTCAAAGTTGATGCCGTAGAAAGCGAAGGCAACC
AGCGGGTTCGAGCAAAGAGGAAAGAAACTGTGAACACCATACTTAGTCTG
ACGGATGAGATAGAGCAACTCCGGACGAAGATAAAGAATTTAAGCTACAT
CAAAAACCCAGGATCGCTTGCAAATGAATGA

protein sequence of Gcaud8392.t1

>Gcaud8392.t1 ID=Gcaud8392.t1|Name=Gcaud8392.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=427bp
MQKSLATNAHLPYSKWSQHRAENGLIYLSHPVTQEVKWLWSRHNDPNTSN
DYLVNTVTGDRQWVTKENEHLCPVPVDKSGNQQKANNSKPTSNAPTNPFT
EKRSQRSKPPNAVKRLPNAESPEYREIAAPKSLGLTADEVLMLVPETGRR
YVFNKKTNSSRWLPDIPPDTIPAPSTQRTFLGRAKAKAADNVDNDIHPHL
REKTKTPFFDPSDPPVADHGLSTKRSSDTPSTAHKLSHSHIAAHNSTNIP
STQPPTNGAHPTRQSPTNQSRAATWRPTANMSSSSRETAPASPSVAAAEQ
TASSQPRKEVNPITEKLNALESVRGNINKITASGKYDMNQFRRLPTMRGK
EEQLEEGSQRLLELEEYLTQQMLKVDAVESEGNQRVRAKRKETVNTILSL
TDEIEQLRTKIKNLSYIKNPGSLANE*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:23525..24994-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8392.t1 ID=Gcaud8392.t1|Name=Gcaud8392.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:23525..24994- (Gracilaria caudata M_176_S67 male)
ATGCAAAAGTCCTTAGCAACCAACGCCCACCTGCCATACTCAAAGTGGTC
CCAGCACCGTGCCGAAAACGGCCTCATTTATCTCTCGCATCCCGTTACCC
AAGAAGTCAAATGGCTCTGGTCCCGACACAATGATCCTAACACAAGCAAC
GACTATCTCGTCAACACCGTTACTGGCGACCGTCAGTGGGTCACCAAGGA
AAACGAACACCTCTGTCCAGTTCCGGTGGACAAATCTGGCAATCAGCAAA
AAGCCAACAATTCAAAACCTACATCCAATGCTCCCACCAACCCTTTCACT
GAGAAGCGTTCGCAGCGAAGTAAACCACCCAACGCCGTAAAACGGCTGCC
TAACGCGGAGAGCCCCGAATATCGCGAGATAGCTGCTCCCAAGTCACTCG
GTCTTACAGCGGATGAAGTGCTCATGCTTGTTCCCGAAACCGGCCGCCGA
TACGTATTCAACAAGAAGACTAATAGTTCACGATGGCTTCCAGATATACC
TCCGGACACCATTCCGGCCCCTTCGACACAGCGAACATTTTTGGGGCGCG
CCAAGGCCAAGGCTGCTGACAACGTTGACAACGACATTCATCCACACCTA
CGTGAAAAGACAAAGACTCCATTTTTTGACCCAAGCGATCCTCCCGTGGC
GGACCACGGCTTATCGACCAAGCGTTCCAGCGATACTCCATCCACGGCCC
ACAAGCTCTCTCATTCCCACATCGCTGCACATAACTCTACTAATATCCCC
TCAACGCAGCCACCAACCAACGGTGCGCATCCGACCCGGCAGTCTCCAAC
GAACCAGAGCAGGGCGGCAACTTGGAGGCCTACAGCTAACATGAGTTCGT
CAAGTCGGGAAACTGCGCCAGCTTCTCCAAGCGTAGCTGCTGCCGAGCAA
ACTGCTTCGAGTCAGCCCCGAAAAGAAGTGAACCCAATAACAGAAAAGCT
CAACGCTTTGGAATCTGTACGTGGCAATATCAATAAGATTACCGCATCTG
GCAAATACGACATGAATCAATTCCGTCGGTTGCCTACAATGCGAGGGAAG
GAAGAGCAACTCGAAGAAGGATCCCAACGTCTCCTAGAGCTGGAAGAATA
TCTGACACAGCAAATGCTCAAAGTTGATGCCGTAGAAAGCGAAGGCAACC
AGCGGGTTCGAGCAAAGAGGAAAGAAACTGTGAACACCATACTTAGTCTG
ACGGATGAGATAGAGCAACTCCGGACGAAGATAAAGAATTTGTGAGCCTG
TAAAATCACGTTACAATCGCTATTTGCCTACAGCCTTTCCGTCAAAACGT
TCAGCCACAGAAACCGGGGCAAACTTTCGCCATCCTTGGTTAACGCAGAA
GGTTCGTACGGAAGTTGGTGAAAGAGCAGCCTTTGCTTCGGAGAAAGATA
AGTCAGCTCATTGTCTCTGACGTACACCAACAGCTACATCAAAAACCCAG
GATCGCTTGCAAATGAATGA

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:23525..24994-

>Gcaud8392.t1 ID=Gcaud8392.t1|Name=Gcaud8392.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1281bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:23525..24994- (Gracilaria caudata M_176_S67 male)
ATGCAAAAGTCCTTAGCAACCAACGCCCACCTGCCATACTCAAAGTGGTC
CCAGCACCGTGCCGAAAACGGCCTCATTTATCTCTCGCATCCCGTTACCC
AAGAAGTCAAATGGCTCTGGTCCCGACACAATGATCCTAACACAAGCAAC
GACTATCTCGTCAACACCGTTACTGGCGACCGTCAGTGGGTCACCAAGGA
AAACGAACACCTCTGTCCAGTTCCGGTGGACAAATCTGGCAATCAGCAAA
AAGCCAACAATTCAAAACCTACATCCAATGCTCCCACCAACCCTTTCACT
GAGAAGCGTTCGCAGCGAAGTAAACCACCCAACGCCGTAAAACGGCTGCC
TAACGCGGAGAGCCCCGAATATCGCGAGATAGCTGCTCCCAAGTCACTCG
GTCTTACAGCGGATGAAGTGCTCATGCTTGTTCCCGAAACCGGCCGCCGA
TACGTATTCAACAAGAAGACTAATAGTTCACGATGGCTTCCAGATATACC
TCCGGACACCATTCCGGCCCCTTCGACACAGCGAACATTTTTGGGGCGCG
CCAAGGCCAAGGCTGCTGACAACGTTGACAACGACATTCATCCACACCTA
CGTGAAAAGACAAAGACTCCATTTTTTGACCCAAGCGATCCTCCCGTGGC
GGACCACGGCTTATCGACCAAGCGTTCCAGCGATACTCCATCCACGGCCC
ACAAGCTCTCTCATTCCCACATCGCTGCACATAACTCTACTAATATCCCC
TCAACGCAGCCACCAACCAACGGTGCGCATCCGACCCGGCAGTCTCCAAC
GAACCAGAGCAGGGCGGCAACTTGGAGGCCTACAGCTAACATGAGTTCGT
CAAGTCGGGAAACTGCGCCAGCTTCTCCAAGCGTAGCTGCTGCCGAGCAA
ACTGCTTCGAGTCAGCCCCGAAAAGAAGTGAACCCAATAACAGAAAAGCT
CAACGCTTTGGAATCTGTACGTGGCAATATCAATAAGATTACCGCATCTG
GCAAATACGACATGAATCAATTCCGTCGGTTGCCTACAATGCGAGGGAAG
GAAGAGCAACTCGAAGAAGGATCCCAACGTCTCCTAGAGCTGGAAGAATA
TCTGACACAGCAAATGCTCAAAGTTGATGCCGTAGAAAGCGAAGGCAACC
AGCGGGTTCGAGCAAAGAGGAAAGAAACTGTGAACACCATACTTAGTCTG
ACGGATGAGATAGAGCAACTCCGGACGAAGATAAAGAATTTAAGCTACAT
CAAAAACCCAGGATCGCTTGCAAATGAATGA