Gcaud8512.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8512.t1
Unique Name	Gcaud8512.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	657

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3978_length_2718_cov_3.301485	contig	NODE_3978_length_2718_cov_3.301485:141..2111 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR382CT
PFAMs	Na_H_Exchanger
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03316
KEGG TC	2.A.36
Evalue	1.24e-66
EggNOG OGs	COG0025@1\|root,KOG1965@2759\|Eukaryota
Description	potassium:proton antiporter activity
COG category	P
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8512	Gcaud8512	Gracilaria caudata M_176_S67 male	gene	NODE_3978_length_2718_cov_3.301485 141..2111 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8512.t1.stop1	Gcaud8512.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3978_length_2718_cov_3.301485 141..143 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8512.t1.CDS1	Gcaud8512.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3978_length_2718_cov_3.301485 141..2111 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8512.t1.exon1	Gcaud8512.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3978_length_2718_cov_3.301485 141..2111 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8512.t1.start1	Gcaud8512.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3978_length_2718_cov_3.301485 2109..2111 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8512.t1	Gcaud8512.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3978_length_2718_cov_3.301485 141..2111 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3978_length_2718_cov_3.301485:141..2111-
coding sequence from alignment at NODE_3978_length_2718_cov_3.301485:141..2111-

mRNA sequence

>Gcaud8512.t1 ID=Gcaud8512.t1|Name=Gcaud8512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp
MPAVGPDLLHGAREAATAAAALVSSLPSLTAVAVRSGGAGGAEHADGGAI
LGPLNGTDIVMILLSISLFLHVVNNHFIGIPSSVAMAFGAILMTVALLIL
SHIPMLGVCTVVEAFRSLLEDFPDILLNYMLGFLLFAAAIEVDFRKVERI
LSTVIALSVVSTFLSTFIVGVMTYFLMQNIAHMDFAWCLLFGAIVSPTDP
VTVMSILAQKPALLPESTRYFVICESLLNDAMGVVLYFTFKEIVTTPDIT
TTGILSILFENVVKECLVGALIGVLFAWIAYSAIRTSKEPLLQVLITFVL
VGNINMVCRIFHASIPLASVGAGLFIGTYAPKFAMGEATDTFHKVWQLAD
ETLNSVLFLLIGAADLFWNPQDLGWENVLLLSVSTVCISLFARFVAVVIP
LLAIIVLEWAFDLHLRHSTVKYRGGTIAVLTWAGMRGGISIALALGVPDA
FVKHAIPGHMTYGQLIFFMTFILVVFSIVVQGMLFEPVVNMINRVSYQIL
PSGGLSTMESQMSLGADYGAMGVESGEDSVLSGDLMWGDNEQLFKDYPDG
SDSSSGVGYQLPRAHTDTRLQDAVGNLQQMTHQREPSNIFTDLPQLREPP
TIQQVISNLQRGTFSFNKWFGSQQPKQDAGSKSRLKRSRTEPDTHRFLTH
DSHGSG*

spliced messenger RNA

>Gcaud8512.t1 ID=Gcaud8512.t1|Name=Gcaud8512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at NODE_3978_length_2718_cov_3.301485:141..2111- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCTGTTGGTCCCGATCTGTTGCATGGCGCGCGAGAGGCTGCCAC
AGCCGCCGCTGCGCTCGTGTCGTCGCTGCCGTCGCTCACGGCCGTCGCCG
TGCGGTCGGGCGGCGCAGGCGGTGCCGAACATGCCGACGGCGGCGCCATT
CTGGGACCGCTCAATGGAACCGACATTGTGATGATTCTGCTTTCCATCTC
TCTGTTCTTGCACGTGGTCAACAATCATTTCATCGGCATTCCCTCCTCCG
TCGCCATGGCGTTCGGCGCCATCCTCATGACCGTTGCGTTGCTCATTCTC
AGTCACATTCCCATGCTCGGTGTTTGCACCGTCGTGGAGGCCTTCCGCTC
GTTGCTGGAGGACTTTCCGGACATATTGCTCAATTACATGCTTGGGTTCC
TTCTGTTCGCCGCCGCAATCGAGGTGGACTTCCGAAAAGTGGAGCGCATT
CTGTCCACCGTCATTGCGCTCAGCGTTGTGTCCACCTTTCTGTCCACCTT
CATTGTGGGCGTCATGACCTACTTCCTCATGCAGAACATTGCGCACATGG
ACTTTGCGTGGTGTCTGTTGTTCGGCGCCATTGTGTCGCCCACCGATCCC
GTCACCGTCATGTCCATCCTCGCTCAAAAGCCAGCGCTTCTTCCCGAGTC
CACGAGGTACTTTGTTATCTGTGAGAGTCTGCTCAACGATGCTATGGGTG
TTGTATTATACTTTACGTTCAAGGAGATTGTCACCACACCGGACATCACC
ACCACGGGCATTCTGTCCATTCTGTTTGAGAATGTGGTCAAGGAATGCTT
GGTAGGCGCGCTAATCGGCGTGCTTTTCGCCTGGATTGCGTACTCTGCTA
TCCGCACCTCCAAGGAGCCGCTACTACAGGTTCTCATTACTTTTGTACTC
GTGGGCAACATTAATATGGTATGTCGTATCTTCCACGCCTCCATTCCGTT
GGCGTCGGTGGGCGCGGGTCTTTTCATCGGCACGTATGCTCCCAAATTTG
CCATGGGCGAGGCCACAGACACGTTCCACAAAGTGTGGCAACTGGCGGAC
GAGACGCTCAACTCAGTGCTGTTCCTGCTCATTGGCGCAGCAGATCTGTT
CTGGAACCCGCAGGATCTCGGCTGGGAAAACGTGCTGTTGCTGAGCGTGT
CCACGGTTTGCATTTCTCTGTTTGCGCGCTTTGTGGCGGTTGTGATCCCG
TTGCTGGCTATCATTGTGCTGGAATGGGCGTTCGACCTGCATCTGCGCCA
TTCAACAGTCAAGTACAGAGGCGGTACAATTGCCGTGTTGACGTGGGCGG
GAATGCGAGGCGGTATTTCGATAGCTTTGGCGCTGGGCGTTCCGGACGCG
TTTGTGAAGCATGCTATTCCGGGACATATGACGTATGGACAGCTTATTTT
CTTTATGACGTTTATTCTGGTGGTATTCTCCATTGTTGTGCAGGGAATGC
TGTTTGAGCCGGTTGTGAACATGATCAACCGAGTGAGCTACCAGATTCTT
CCCAGCGGCGGTCTCAGCACGATGGAGTCTCAAATGAGTCTGGGCGCTGA
CTATGGCGCAATGGGCGTTGAATCGGGAGAGGATTCGGTGCTGTCGGGAG
ACCTGATGTGGGGCGATAACGAGCAATTGTTCAAAGACTACCCCGACGGG
TCGGATTCAAGCTCAGGAGTAGGGTACCAACTTCCGCGCGCGCACACGGA
CACCAGACTGCAGGACGCGGTGGGAAATCTGCAGCAAATGACTCACCAGC
GAGAGCCCTCCAACATCTTTACGGATCTTCCGCAGCTGCGCGAACCACCC
ACGATCCAGCAGGTGATCTCCAACTTGCAGCGTGGCACTTTTTCGTTCAA
CAAGTGGTTTGGGTCGCAGCAACCGAAACAAGATGCGGGCTCGAAGAGCC
GACTGAAACGGTCGCGCACTGAGCCTGATACACACAGGTTTTTGACACAT
GATTCACATGGTTCGGGTTAA

protein sequence of Gcaud8512.t1

>Gcaud8512.t1 ID=Gcaud8512.t1|Name=Gcaud8512.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=657bp
MPAVGPDLLHGAREAATAAAALVSSLPSLTAVAVRSGGAGGAEHADGGAI
LGPLNGTDIVMILLSISLFLHVVNNHFIGIPSSVAMAFGAILMTVALLIL
SHIPMLGVCTVVEAFRSLLEDFPDILLNYMLGFLLFAAAIEVDFRKVERI
LSTVIALSVVSTFLSTFIVGVMTYFLMQNIAHMDFAWCLLFGAIVSPTDP
VTVMSILAQKPALLPESTRYFVICESLLNDAMGVVLYFTFKEIVTTPDIT
TTGILSILFENVVKECLVGALIGVLFAWIAYSAIRTSKEPLLQVLITFVL
VGNINMVCRIFHASIPLASVGAGLFIGTYAPKFAMGEATDTFHKVWQLAD
ETLNSVLFLLIGAADLFWNPQDLGWENVLLLSVSTVCISLFARFVAVVIP
LLAIIVLEWAFDLHLRHSTVKYRGGTIAVLTWAGMRGGISIALALGVPDA
FVKHAIPGHMTYGQLIFFMTFILVVFSIVVQGMLFEPVVNMINRVSYQIL
PSGGLSTMESQMSLGADYGAMGVESGEDSVLSGDLMWGDNEQLFKDYPDG
SDSSSGVGYQLPRAHTDTRLQDAVGNLQQMTHQREPSNIFTDLPQLREPP
TIQQVISNLQRGTFSFNKWFGSQQPKQDAGSKSRLKRSRTEPDTHRFLTH
DSHGSG*

mRNA from alignment at NODE_3978_length_2718_cov_3.301485:141..2111-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8512.t1 ID=Gcaud8512.t1|Name=Gcaud8512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at NODE_3978_length_2718_cov_3.301485:141..2111- (Gracilaria caudata M_176_S67 male)
ATGCCTGCTGTTGGTCCCGATCTGTTGCATGGCGCGCGAGAGGCTGCCAC
AGCCGCCGCTGCGCTCGTGTCGTCGCTGCCGTCGCTCACGGCCGTCGCCG
TGCGGTCGGGCGGCGCAGGCGGTGCCGAACATGCCGACGGCGGCGCCATT
CTGGGACCGCTCAATGGAACCGACATTGTGATGATTCTGCTTTCCATCTC
TCTGTTCTTGCACGTGGTCAACAATCATTTCATCGGCATTCCCTCCTCCG
TCGCCATGGCGTTCGGCGCCATCCTCATGACCGTTGCGTTGCTCATTCTC
AGTCACATTCCCATGCTCGGTGTTTGCACCGTCGTGGAGGCCTTCCGCTC
GTTGCTGGAGGACTTTCCGGACATATTGCTCAATTACATGCTTGGGTTCC
TTCTGTTCGCCGCCGCAATCGAGGTGGACTTCCGAAAAGTGGAGCGCATT
CTGTCCACCGTCATTGCGCTCAGCGTTGTGTCCACCTTTCTGTCCACCTT
CATTGTGGGCGTCATGACCTACTTCCTCATGCAGAACATTGCGCACATGG
ACTTTGCGTGGTGTCTGTTGTTCGGCGCCATTGTGTCGCCCACCGATCCC
GTCACCGTCATGTCCATCCTCGCTCAAAAGCCAGCGCTTCTTCCCGAGTC
CACGAGGTACTTTGTTATCTGTGAGAGTCTGCTCAACGATGCTATGGGTG
TTGTATTATACTTTACGTTCAAGGAGATTGTCACCACACCGGACATCACC
ACCACGGGCATTCTGTCCATTCTGTTTGAGAATGTGGTCAAGGAATGCTT
GGTAGGCGCGCTAATCGGCGTGCTTTTCGCCTGGATTGCGTACTCTGCTA
TCCGCACCTCCAAGGAGCCGCTACTACAGGTTCTCATTACTTTTGTACTC
GTGGGCAACATTAATATGGTATGTCGTATCTTCCACGCCTCCATTCCGTT
GGCGTCGGTGGGCGCGGGTCTTTTCATCGGCACGTATGCTCCCAAATTTG
CCATGGGCGAGGCCACAGACACGTTCCACAAAGTGTGGCAACTGGCGGAC
GAGACGCTCAACTCAGTGCTGTTCCTGCTCATTGGCGCAGCAGATCTGTT
CTGGAACCCGCAGGATCTCGGCTGGGAAAACGTGCTGTTGCTGAGCGTGT
CCACGGTTTGCATTTCTCTGTTTGCGCGCTTTGTGGCGGTTGTGATCCCG
TTGCTGGCTATCATTGTGCTGGAATGGGCGTTCGACCTGCATCTGCGCCA
TTCAACAGTCAAGTACAGAGGCGGTACAATTGCCGTGTTGACGTGGGCGG
GAATGCGAGGCGGTATTTCGATAGCTTTGGCGCTGGGCGTTCCGGACGCG
TTTGTGAAGCATGCTATTCCGGGACATATGACGTATGGACAGCTTATTTT
CTTTATGACGTTTATTCTGGTGGTATTCTCCATTGTTGTGCAGGGAATGC
TGTTTGAGCCGGTTGTGAACATGATCAACCGAGTGAGCTACCAGATTCTT
CCCAGCGGCGGTCTCAGCACGATGGAGTCTCAAATGAGTCTGGGCGCTGA
CTATGGCGCAATGGGCGTTGAATCGGGAGAGGATTCGGTGCTGTCGGGAG
ACCTGATGTGGGGCGATAACGAGCAATTGTTCAAAGACTACCCCGACGGG
TCGGATTCAAGCTCAGGAGTAGGGTACCAACTTCCGCGCGCGCACACGGA
CACCAGACTGCAGGACGCGGTGGGAAATCTGCAGCAAATGACTCACCAGC
GAGAGCCCTCCAACATCTTTACGGATCTTCCGCAGCTGCGCGAACCACCC
ACGATCCAGCAGGTGATCTCCAACTTGCAGCGTGGCACTTTTTCGTTCAA
CAAGTGGTTTGGGTCGCAGCAACCGAAACAAGATGCGGGCTCGAAGAGCC
GACTGAAACGGTCGCGCACTGAGCCTGATACACACAGGTTTTTGACACAT
GATTCACATGGTTCGGGTTAA

Coding sequence (CDS) from alignment at NODE_3978_length_2718_cov_3.301485:141..2111-

>Gcaud8512.t1 ID=Gcaud8512.t1|Name=Gcaud8512.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1971bp|location=Sequence derived from alignment at NODE_3978_length_2718_cov_3.301485:141..2111- (Gracilaria caudata M_176_S67 male)
ATGCCTGCTGTTGGTCCCGATCTGTTGCATGGCGCGCGAGAGGCTGCCAC
AGCCGCCGCTGCGCTCGTGTCGTCGCTGCCGTCGCTCACGGCCGTCGCCG
TGCGGTCGGGCGGCGCAGGCGGTGCCGAACATGCCGACGGCGGCGCCATT
CTGGGACCGCTCAATGGAACCGACATTGTGATGATTCTGCTTTCCATCTC
TCTGTTCTTGCACGTGGTCAACAATCATTTCATCGGCATTCCCTCCTCCG
TCGCCATGGCGTTCGGCGCCATCCTCATGACCGTTGCGTTGCTCATTCTC
AGTCACATTCCCATGCTCGGTGTTTGCACCGTCGTGGAGGCCTTCCGCTC
GTTGCTGGAGGACTTTCCGGACATATTGCTCAATTACATGCTTGGGTTCC
TTCTGTTCGCCGCCGCAATCGAGGTGGACTTCCGAAAAGTGGAGCGCATT
CTGTCCACCGTCATTGCGCTCAGCGTTGTGTCCACCTTTCTGTCCACCTT
CATTGTGGGCGTCATGACCTACTTCCTCATGCAGAACATTGCGCACATGG
ACTTTGCGTGGTGTCTGTTGTTCGGCGCCATTGTGTCGCCCACCGATCCC
GTCACCGTCATGTCCATCCTCGCTCAAAAGCCAGCGCTTCTTCCCGAGTC
CACGAGGTACTTTGTTATCTGTGAGAGTCTGCTCAACGATGCTATGGGTG
TTGTATTATACTTTACGTTCAAGGAGATTGTCACCACACCGGACATCACC
ACCACGGGCATTCTGTCCATTCTGTTTGAGAATGTGGTCAAGGAATGCTT
GGTAGGCGCGCTAATCGGCGTGCTTTTCGCCTGGATTGCGTACTCTGCTA
TCCGCACCTCCAAGGAGCCGCTACTACAGGTTCTCATTACTTTTGTACTC
GTGGGCAACATTAATATGGTATGTCGTATCTTCCACGCCTCCATTCCGTT
GGCGTCGGTGGGCGCGGGTCTTTTCATCGGCACGTATGCTCCCAAATTTG
CCATGGGCGAGGCCACAGACACGTTCCACAAAGTGTGGCAACTGGCGGAC
GAGACGCTCAACTCAGTGCTGTTCCTGCTCATTGGCGCAGCAGATCTGTT
CTGGAACCCGCAGGATCTCGGCTGGGAAAACGTGCTGTTGCTGAGCGTGT
CCACGGTTTGCATTTCTCTGTTTGCGCGCTTTGTGGCGGTTGTGATCCCG
TTGCTGGCTATCATTGTGCTGGAATGGGCGTTCGACCTGCATCTGCGCCA
TTCAACAGTCAAGTACAGAGGCGGTACAATTGCCGTGTTGACGTGGGCGG
GAATGCGAGGCGGTATTTCGATAGCTTTGGCGCTGGGCGTTCCGGACGCG
TTTGTGAAGCATGCTATTCCGGGACATATGACGTATGGACAGCTTATTTT
CTTTATGACGTTTATTCTGGTGGTATTCTCCATTGTTGTGCAGGGAATGC
TGTTTGAGCCGGTTGTGAACATGATCAACCGAGTGAGCTACCAGATTCTT
CCCAGCGGCGGTCTCAGCACGATGGAGTCTCAAATGAGTCTGGGCGCTGA
CTATGGCGCAATGGGCGTTGAATCGGGAGAGGATTCGGTGCTGTCGGGAG
ACCTGATGTGGGGCGATAACGAGCAATTGTTCAAAGACTACCCCGACGGG
TCGGATTCAAGCTCAGGAGTAGGGTACCAACTTCCGCGCGCGCACACGGA
CACCAGACTGCAGGACGCGGTGGGAAATCTGCAGCAAATGACTCACCAGC
GAGAGCCCTCCAACATCTTTACGGATCTTCCGCAGCTGCGCGAACCACCC
ACGATCCAGCAGGTGATCTCCAACTTGCAGCGTGGCACTTTTTCGTTCAA
CAAGTGGTTTGGGTCGCAGCAACCGAAACAAGATGCGGGCTCGAAGAGCC
GACTGAAACGGTCGCGCACTGAGCCTGATACACACAGGTTTTTGACACAT
GATTCACATGGTTCGGGTTAA