Gcaud874.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud874.t1
Unique NameGcaud874.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3826_length_2895_cov_4.444009contigNODE_3826_length_2895_cov_4.444009:568..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463820.JOGW01000024_gene4857
PFAMsPI-PLC-X
Max annot lvl201174|Actinobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Evalue4.85e-46
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2GMN7@201174|Actinobacteria
EC4.6.1.13
DescriptionPhosphatidylinositol-specific phospholipase C, X domain
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud874Gcaud874Gracilaria caudata M_176_S67 malegeneNODE_3826_length_2895_cov_4.444009 568..2013 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud874.t1.start1Gcaud874.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3826_length_2895_cov_4.444009 568..570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud874.t1.CDS1Gcaud874.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3826_length_2895_cov_4.444009 568..2013 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud874.t1.exon1Gcaud874.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3826_length_2895_cov_4.444009 568..2013 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud874.t1.stop1Gcaud874.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3826_length_2895_cov_4.444009 2011..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud874.t1Gcaud874.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3826_length_2895_cov_4.444009 568..2013 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud874.t1 ID=Gcaud874.t1|Name=Gcaud874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=482bp
MEQYDSIPKVAAPSSTDENVGLVSGSIRLPSLPSLPSLSSLPRLPRPKIS
HGLLAFLALAMLGCVVFLPEHRRSGSLMHYGFSPSPVGVVTDSRLTVLDE
DSKSKGTMTSSSSPASWLTNAVEDWMVDLPNSKSIAHVSIPGTHDSGARY
GGAACETQSWTIEKQLQAGLRFFDIRCRVAGTVFSIHHGPCFQEMFFGDV
LIDVQDFLRAHPNEFVVMNIQEEHKPMDGSASFSSIWNTYKSNFNSLFVD
SRYSLPTVGEIRGKVLVMSKLSLGKGIKWDSSLTETQNTYKVYALLHDNP
FGSGTASIGQKKRLVREYIDKAASSNKLVINFLSGAEGMIPKDVARSTNQ
NAYEHIGGYSGAKRVGVIIMDFPGEKLVYRVIKSNFEATEYCPPRTWRTQ
SGQTWAEFRMPEAVVGTSISIKGGAYHKYKFPKCHRATWTDLRFVCSSST
KTWEVASGSWDADAWCHSSNTNQNYLAVGTL*
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spliced messenger RNA

>Gcaud874.t1 ID=Gcaud874.t1|Name=Gcaud874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_3826_length_2895_cov_4.444009:568..2013+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAATACGATTCGATCCCGAAAGTGGCCGCGCCCAGTTCCACTGA
CGAGAATGTCGGCTTAGTGTCCGGCTCCATTCGTcttcctagtcttccta
gtcttcctagcctttctagccttcctcgccttcctCGCCCGAAAATCAGT
CATGGTCTGCTTGCATTTCTCGCGCTGGCGATGCTTGGATGCGTTGTGTT
CCTCCCGGAACATCGTCGATCTGGATCGCTCATGCACTATGGCTTCTCAC
CAAGTCCTGTTGGTGTGGTAACCGATTCTCGTCTGACTGTTCTCGACGAG
GACTCCAAGTCGAAAGGAACCATGACATCATCTTCATCACCGGCGTCCTG
GCTTACCAACGCCGTAGAGGATTGGATGGTTGATCTTCCAAACAGCAAAT
CGATTGCCCATGTCTCCATCCCCGGTACTCACGATTCTGGCGCGCGTTAT
GGTGGCGCGGCTTGTGAGACGCAGTCGTGGACAATTGAGAAGCAGTTGCA
GGCTGGACTCCGCTTCTTTGATATCAGATGCCGAGTCGCTGGCACAGTGT
TTTCCATCCATCACGGGCCCTGCTTCCAGGAAATGTTCTTCGGAGATGTT
TTGATCGACGTGCAAGACTTTCTTCGAGCCCACCCCAACGAGTTTGTGGT
TATGAACATCCAGGAAGAACACAAACCCATGGACGGATCTGCCTCGTTTT
CATCCATCTGGAACACGTACAAGAGTAACTTCAACAGTCTATTCGTTGAC
TCCCGCTATTCCCTGCCAACCGTAGGAGAAATTCGAGGAAAGGTGTTGGT
TATGAGTAAGCTGTCATTGGGCAAGGGAATTAAATGGGATAGTTCTCTCA
CAGAAACTCAGAACACCTACAAGGTTTACGCACTGCTCCACGACAATCCG
TTCGGTTCGGGAACCGCTTCTATTGGACAAAAGAAGAGACTGGTGAGAGA
GTACATTGACAAAGCGGCCTCCTCTAACAAACTCGTGATCAACTTCTTGT
CCGGGGCGGAGGGCATGATCCCGAAGGACGTCGCACGCAGCACCAACCAA
AATGCGTACGAGCACATCGGTGGATACAGCGGCGCAAAGCGCGTAGGTGT
GATTATCATGGACTTCCCTGGAGAGAAACTTGTGTACCGCGTTATCAAGT
CCAACTTTGAGGCTACAGAGTACTGCCCGCCGAGAACTTGGCGCACACAG
AGCGGTCAGACATGGGCAGAATTCCGGATGCCAGAAGCAGTTGTGGGAAC
CTCTATTAGCATCAAGGGAGGTGCTTATCATAAGTACAAGTTCCCGAAAT
GCCATCGCGCAACTTGGACTGATTTGCGCTTCGTGTGCAGTTCTTCCACG
AAAACTTGGGAGGTTGCTTCTGGGTCATGGGACGCTGATGCGTGGTGCCA
TAGCAGTAACACCAACCAAAACTATCTTGCAGTGGGAACGCTGTGA
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protein sequence of Gcaud874.t1

>Gcaud874.t1 ID=Gcaud874.t1|Name=Gcaud874.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=482bp
MEQYDSIPKVAAPSSTDENVGLVSGSIRLPSLPSLPSLSSLPRLPRPKIS
HGLLAFLALAMLGCVVFLPEHRRSGSLMHYGFSPSPVGVVTDSRLTVLDE
DSKSKGTMTSSSSPASWLTNAVEDWMVDLPNSKSIAHVSIPGTHDSGARY
GGAACETQSWTIEKQLQAGLRFFDIRCRVAGTVFSIHHGPCFQEMFFGDV
LIDVQDFLRAHPNEFVVMNIQEEHKPMDGSASFSSIWNTYKSNFNSLFVD
SRYSLPTVGEIRGKVLVMSKLSLGKGIKWDSSLTETQNTYKVYALLHDNP
FGSGTASIGQKKRLVREYIDKAASSNKLVINFLSGAEGMIPKDVARSTNQ
NAYEHIGGYSGAKRVGVIIMDFPGEKLVYRVIKSNFEATEYCPPRTWRTQ
SGQTWAEFRMPEAVVGTSISIKGGAYHKYKFPKCHRATWTDLRFVCSSST
KTWEVASGSWDADAWCHSSNTNQNYLAVGTL*
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mRNA from alignment at NODE_3826_length_2895_cov_4.444009:568..2013+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud874.t1 ID=Gcaud874.t1|Name=Gcaud874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at NODE_3826_length_2895_cov_4.444009:568..2013+ (Gracilaria caudata M_176_S67 male)
ATGGAGCAATACGATTCGATCCCGAAAGTGGCCGCGCCCAGTTCCACTGA
CGAGAATGTCGGCTTAGTGTCCGGCTCCATTCGTcttcctagtcttccta
gtcttcctagcctttctagccttcctcgccttcctCGCCCGAAAATCAGT
CATGGTCTGCTTGCATTTCTCGCGCTGGCGATGCTTGGATGCGTTGTGTT
CCTCCCGGAACATCGTCGATCTGGATCGCTCATGCACTATGGCTTCTCAC
CAAGTCCTGTTGGTGTGGTAACCGATTCTCGTCTGACTGTTCTCGACGAG
GACTCCAAGTCGAAAGGAACCATGACATCATCTTCATCACCGGCGTCCTG
GCTTACCAACGCCGTAGAGGATTGGATGGTTGATCTTCCAAACAGCAAAT
CGATTGCCCATGTCTCCATCCCCGGTACTCACGATTCTGGCGCGCGTTAT
GGTGGCGCGGCTTGTGAGACGCAGTCGTGGACAATTGAGAAGCAGTTGCA
GGCTGGACTCCGCTTCTTTGATATCAGATGCCGAGTCGCTGGCACAGTGT
TTTCCATCCATCACGGGCCCTGCTTCCAGGAAATGTTCTTCGGAGATGTT
TTGATCGACGTGCAAGACTTTCTTCGAGCCCACCCCAACGAGTTTGTGGT
TATGAACATCCAGGAAGAACACAAACCCATGGACGGATCTGCCTCGTTTT
CATCCATCTGGAACACGTACAAGAGTAACTTCAACAGTCTATTCGTTGAC
TCCCGCTATTCCCTGCCAACCGTAGGAGAAATTCGAGGAAAGGTGTTGGT
TATGAGTAAGCTGTCATTGGGCAAGGGAATTAAATGGGATAGTTCTCTCA
CAGAAACTCAGAACACCTACAAGGTTTACGCACTGCTCCACGACAATCCG
TTCGGTTCGGGAACCGCTTCTATTGGACAAAAGAAGAGACTGGTGAGAGA
GTACATTGACAAAGCGGCCTCCTCTAACAAACTCGTGATCAACTTCTTGT
CCGGGGCGGAGGGCATGATCCCGAAGGACGTCGCACGCAGCACCAACCAA
AATGCGTACGAGCACATCGGTGGATACAGCGGCGCAAAGCGCGTAGGTGT
GATTATCATGGACTTCCCTGGAGAGAAACTTGTGTACCGCGTTATCAAGT
CCAACTTTGAGGCTACAGAGTACTGCCCGCCGAGAACTTGGCGCACACAG
AGCGGTCAGACATGGGCAGAATTCCGGATGCCAGAAGCAGTTGTGGGAAC
CTCTATTAGCATCAAGGGAGGTGCTTATCATAAGTACAAGTTCCCGAAAT
GCCATCGCGCAACTTGGACTGATTTGCGCTTCGTGTGCAGTTCTTCCACG
AAAACTTGGGAGGTTGCTTCTGGGTCATGGGACGCTGATGCGTGGTGCCA
TAGCAGTAACACCAACCAAAACTATCTTGCAGTGGGAACGCTGTGA
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Coding sequence (CDS) from alignment at NODE_3826_length_2895_cov_4.444009:568..2013+

>Gcaud874.t1 ID=Gcaud874.t1|Name=Gcaud874.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1446bp|location=Sequence derived from alignment at NODE_3826_length_2895_cov_4.444009:568..2013+ (Gracilaria caudata M_176_S67 male)
ATGGAGCAATACGATTCGATCCCGAAAGTGGCCGCGCCCAGTTCCACTGA
CGAGAATGTCGGCTTAGTGTCCGGCTCCATTCGTcttcctagtcttccta
gtcttcctagcctttctagccttcctcgccttcctCGCCCGAAAATCAGT
CATGGTCTGCTTGCATTTCTCGCGCTGGCGATGCTTGGATGCGTTGTGTT
CCTCCCGGAACATCGTCGATCTGGATCGCTCATGCACTATGGCTTCTCAC
CAAGTCCTGTTGGTGTGGTAACCGATTCTCGTCTGACTGTTCTCGACGAG
GACTCCAAGTCGAAAGGAACCATGACATCATCTTCATCACCGGCGTCCTG
GCTTACCAACGCCGTAGAGGATTGGATGGTTGATCTTCCAAACAGCAAAT
CGATTGCCCATGTCTCCATCCCCGGTACTCACGATTCTGGCGCGCGTTAT
GGTGGCGCGGCTTGTGAGACGCAGTCGTGGACAATTGAGAAGCAGTTGCA
GGCTGGACTCCGCTTCTTTGATATCAGATGCCGAGTCGCTGGCACAGTGT
TTTCCATCCATCACGGGCCCTGCTTCCAGGAAATGTTCTTCGGAGATGTT
TTGATCGACGTGCAAGACTTTCTTCGAGCCCACCCCAACGAGTTTGTGGT
TATGAACATCCAGGAAGAACACAAACCCATGGACGGATCTGCCTCGTTTT
CATCCATCTGGAACACGTACAAGAGTAACTTCAACAGTCTATTCGTTGAC
TCCCGCTATTCCCTGCCAACCGTAGGAGAAATTCGAGGAAAGGTGTTGGT
TATGAGTAAGCTGTCATTGGGCAAGGGAATTAAATGGGATAGTTCTCTCA
CAGAAACTCAGAACACCTACAAGGTTTACGCACTGCTCCACGACAATCCG
TTCGGTTCGGGAACCGCTTCTATTGGACAAAAGAAGAGACTGGTGAGAGA
GTACATTGACAAAGCGGCCTCCTCTAACAAACTCGTGATCAACTTCTTGT
CCGGGGCGGAGGGCATGATCCCGAAGGACGTCGCACGCAGCACCAACCAA
AATGCGTACGAGCACATCGGTGGATACAGCGGCGCAAAGCGCGTAGGTGT
GATTATCATGGACTTCCCTGGAGAGAAACTTGTGTACCGCGTTATCAAGT
CCAACTTTGAGGCTACAGAGTACTGCCCGCCGAGAACTTGGCGCACACAG
AGCGGTCAGACATGGGCAGAATTCCGGATGCCAGAAGCAGTTGTGGGAAC
CTCTATTAGCATCAAGGGAGGTGCTTATCATAAGTACAAGTTCCCGAAAT
GCCATCGCGCAACTTGGACTGATTTGCGCTTCGTGTGCAGTTCTTCCACG
AAAACTTGGGAGGTTGCTTCTGGGTCATGGGACGCTGATGCGTGGTGCCA
TAGCAGTAACACCAACCAAAACTATCTTGCAGTGGGAACGCTGTGA
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