Gcaud6866.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud6866.t2
Unique NameGcaud6866.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length283
Homology
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A2V3IWL8_9FLOR (ER membrane protein complex subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWL8_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 1.080e-117
Identity = 176/281 (62.63%), Postives = 213/281 (75.80%), Query Frame = 0
Query:    2 LSAIADGALYLPHLVLQHASLALTAHRETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVCAILVDGNLLDDEAERATTLRLLNVARKGITAVYANSSTLSGGVYVATTLGSSVYTGKKRMLRE 282
            LS I+D  LY P  VL+ A  AL AHR ++RP+WD  EQ+ +AA  + D  TA+  + RIL RFPNS+R+ +L+ +  E++  W+ AA+ YI +    P  + AYKRQ+ALLKSQ KL EAA LLH YL+ F TDFD WAELC+L LQLGRFAHAIFAANELL++DP NHAAH VVADVY TLGGV +LCLARKHYAASLS+R+A NLRALYGLWLVCA L+DG LL D+ +   TLRL  VARKGITAVY N +  SG V+VA TLG SVYTG+KR+L+E
Sbjct:   25 LSLISDARLYRPRTVLRLADTALRAHRPSTRPFWDAAEQVALAAYHVFDSRTAAQFVRRILDRFPNSSRARLLQAISHESQLKWVDAARAYIRITDADPLFKPAYKRQVALLKSQFKLSEAATLLHDYLNKFATDFDAWAELCALDLQLGRFAHAIFAANELLLLDPHNHAAHTVVADVYATLGGVHNLCLARKHYAASLSMRAASNLRALYGLWLVCATLLDGRLLKDDRDLQVTLRLFRVARKGITAVYRNPTAQSGAVFVANTLGMSVYTGEKRVLKE 305          
BLAST of Gcaud6866.t2 vs. uniprot
Match: M4BV78_HYAAE (ER membrane protein complex subunit 2 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV78_HYAAE)

HSP 1 Score: 145 bits (365), Expect = 4.570e-38
Identity = 84/241 (34.85%), Postives = 131/241 (54.36%), Query Frame = 0
Query:   16 VLQHASLALTAHRE-TSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYA 253
            V +   L +T HR       W V EQ FIAA  + D   + + L  + G+FP S+R   L+G++LE + ++  A   Y  ++  +P +   +KR+IA+LK+Q+K  +  A L+ +L  FGTD   W EL    L +G + +A F   EL++++P +   H  +AD+Y T+GG+++L  ARKHYA SL L    NLRA + L ++C  AI +      D+ +     RL   A   I  +YA
Sbjct:   40 VSRTGKLLVTKHRRGLGDEVWTVYEQTFIAALDVHDDELSETCLKALQGQFPGSSRVARLEGMQLEQRNEFTKALTLYDQLLGANPANALVFKRKIAVLKAQKKTMDVIAALNEFLRCFGTDQTAWTELGETYLSIGTYRYAAFCYEELVLLNPMDAIYHSRLADIYSTIGGLDNLLKARKHYAHSLELNKKQNLRAYFAL-VICTKAIAMQRGFRADQDDDGINERLQTFALNSIQDIYA 279          
BLAST of Gcaud6866.t2 vs. uniprot
Match: H3HDU6_PHYRM (ER membrane protein complex subunit 2 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDU6_PHYRM)

HSP 1 Score: 144 bits (362), Expect = 1.210e-37
Identity = 85/244 (34.84%), Postives = 129/244 (52.87%), Query Frame = 0
Query:   13 PHLVLQHASLALTAHR-ETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYA 253
            P  V +   L +T H        W V EQ  +AA  L D   A + L  +  +FP S+R   L+G+RLE + +++ A   Y  ++  +P +    KR+IA+LK+Q+K  +  A L+  L  FG+D   W EL    L +G + +A F   E+++++P +  +H  +AD+Y T+GG+++L  ARKHYA S+ L    NLRA +GL L C  AI V      D+ +     RL   A   I  VYA
Sbjct:   37 PRAVARVGQLLVTKHSWGLGDELWSVYEQTLVAALDLHDDELADTCLTALQRKFPGSSRVARLEGMRLEQRGEFVKALALYDELLESNPANMLVLKRKIAVLKAQKKTADVVAALNELLRSFGSDLAAWTELGETYLSMGAYRYAAFCYEEMVLLNPMDAISHSRLADIYSTVGGLDNLLTARKHYAHSIELNKKQNLRAYFGL-LTCTKAITVQRGYRADQDDDGINERLQKFALDNILDVYA 279          
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A0N7L4P2_PLAHL (ER membrane protein complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4P2_PLAHL)

HSP 1 Score: 142 bits (358), Expect = 4.480e-37
Identity = 84/232 (36.21%), Postives = 123/232 (53.02%), Query Frame = 0
Query:   27 HRETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYANSS 256
            HR      W+V EQ FIAA  L D   A++ L  +  +FP S+R   L+G++LE + ++  A   Y  ++  +P +    KR+IA+ K+Q+K  +    L+ +L  FGTD   W EL    L LG + +A F   EL++++P +  AH  +AD+Y T+GG+E+L  ARKHYA S+ L    NLRA   L LVC  AI        D  +     RL   A + I  +Y   S
Sbjct:   50 HRGLGDELWNVYEQTFIAALDLHDDELATTCLQALQTKFPGSSRVARLEGMQLEQRGEFAKALALYAELLEANPANALVLKRKIAIYKAQKKTTDVIMALNEFLRSFGTDLAAWTELGETYLSLGAYRYAAFCYEELVLLNPMDAIAHSRLADIYSTIGGLEYLLTARKHYAHSIELNKKQNLRAFLAL-LVCTKAIATQRGYRADLDDGGINERLRKFALEHIQDLYTAHS 280          
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A3M6V6N0_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6N0_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.970e-37
Identity = 85/244 (34.84%), Postives = 128/244 (52.46%), Query Frame = 0
Query:   13 PHLVLQHASLALTAHR-ETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYA 253
            PH V     L +T H        W V EQ FIAA  L D   + + L  +  +FP S+R   L+G++LE + ++  A   Y  ++  +P +   +KR+IA+LK+Q+K  +    L+ +L  FGTD   W EL    L +G + +A F   EL++++P +  +H  +AD+Y T+GG+++L  ARKHYA SL L    NLRA + L + C  AI        D+ +     RL N A   I   YA
Sbjct:   37 PHAVASIGKLLVTKHSWGLGDELWTVYEQTFIAALDLHDDELSETCLKALQTKFPGSSRVARLEGMQLEQRREFTKALALYDELLEANPANALVFKRKIAVLKAQRKTADVVTALNEFLRSFGTDQTAWTELGETYLSIGTYRYAAFCYEELVLLNPMDAISHSRLADIYATIGGLDNLLKARKHYAHSLELNKKQNLRACFAL-VACTKAIATQRGYRADQDDDGINGRLQNFALDHIQDFYA 279          
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A7S2CCR7_9STRA (ER membrane protein complex subunit 2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCR7_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.540e-35
Identity = 78/242 (32.23%), Postives = 126/242 (52.07%), Query Frame = 0
Query:   15 LVLQHASLALTAHRETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVCAILVDGNLLDDEAERATTLRLLNVARKGITAVYANSS 256
            +V++H S  +         YW V+EQ+F+AA  + + + A + L  +  +FP S R   L G+  EA   +  A + Y  ++ E+P +Q   KRQ+ +LK+Q K+P A   L++YL  F  D + W EL  L L + ++  A F   EL++ +P +H  H  + ++Y TLGG +H+  ARK++A SL L+   N RAL+GL   C    +    D       T  L   A + +  +Y+  S
Sbjct:   43 MVVRHGSKLVERQAALGDEYWSVLEQVFLAALDVDERSLAQTCLQALNEQFPESTRVKRLVGISREAMGKYAEAEEIYKGMLEENPANQLVLKRQVCVLKAQNKIPAAIKCLNNYLKQFQADANAWQELADLYLSVSKYEAAAFCYEELVLANPTSHINHCRLGEIYYTLGG-KHIAKARKYFAQSLELKKTNNARALHGLAACCH--ANTTFKDRNVRADVTAALHEYASEELAKLYSEQS 281          
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A484E9D9_BRELC (ER membrane protein complex subunit 2 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9D9_BRELC)

HSP 1 Score: 138 bits (348), Expect = 2.270e-35
Identity = 85/259 (32.82%), Postives = 133/259 (51.35%), Query Frame = 0
Query:    1 LLSAIADGALYLPHLVLQHASLALTAHR-ETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYANSS 256
            LL  I    L +PH+V       +T H        W + E  F+AA  L D+  A + L  +  +FP S+R   L+G+RLE + ++  A   Y  ++  +P +    KR+IA+LK+Q+K  +    L+ +L  FGTD   W EL    L LG + +A +   EL++++P +   H  +AD+Y T+GG+++L +ARKHYA S+ L    NLRA + L + C  AI    N   ++ +     RL   A   I  +Y   S
Sbjct:   23 LLHYIRKEKLRVPHVVASMGKKLVTEHSWGLGDELWSLYEHTFVAALDLHDNDLAETCLQALKNKFPGSSRVSRLEGMRLEQRGEFSQALMLYDELLEANPANALVLKRKIAILKAQKKSTDVVVALNDFLRSFGTDQAAWTELGETYLSLGTYRYAAYCYEELVLLNPMDAITHSRLADIYSTIGGLDNLLIARKHYAHSIELNKKKNLRAYFAL-VACTKAITTQRNYRAEQDDGGINERLQKFALDYIQDLYTAHS 280          
BLAST of Gcaud6866.t2 vs. uniprot
Match: W2QL82_PHYPN (ER membrane protein complex subunit 2 n=9 Tax=Phytophthora TaxID=4783 RepID=W2QL82_PHYPN)

HSP 1 Score: 136 bits (342), Expect = 1.070e-34
Identity = 83/247 (33.60%), Postives = 125/247 (50.61%), Query Frame = 0
Query:   13 PHLVLQHASLALTAHR-ETSRPYWDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVYANSS 256
            P  V     L +T H        W V EQ F+AA  L D   A + L  +  +FP S+R   L+G++LE + ++  A   Y  ++  +P +    KR+IA+LK+Q+K  E    L+ +L  FGTD   W EL    L +G + +A F   EL++++P +  +H  +AD+Y T+GG+++L  ARKHYA S+ L    NLRA + L + C  AI        D+ +     RL   A   I   Y   S
Sbjct:   37 PRAVASIGKLLVTKHSWGLGDELWGVYEQTFVAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQRGEFAKALVLYAELLEANPANALVLKRKIAVLKAQKKTAEVVTALNEFLKSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLADIYSTIGGLDNLLTARKHYAHSIELNKKQNLRAYFSL-VTCTKAIAAQRGYRADQDDDGINERLQKFALDHIQDFYTAHS 282          
BLAST of Gcaud6866.t2 vs. uniprot
Match: D0NVY1_PHYIT (ER membrane protein complex subunit 2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NVY1_PHYIT)

HSP 1 Score: 132 bits (332), Expect = 3.150e-33
Identity = 68/181 (37.57%), Postives = 104/181 (57.46%), Query Frame = 0
Query:   35 WDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGL 215
            W + EQ FIAA  L D   A + L  +  +FP S+R   L+G++LE   ++  A   Y  ++  +P +    KR+IA+LK+Q+K  +    L+ +L  FGTD   W EL    L +G + +A F   EL++++P +  +H  + DVY T+GG+E+L  ARKHYA S+ L    NLRA + L
Sbjct:   60 WSIYEQTFIAALDLHDDELAETCLKALQTKFPGSSRVARLEGMQLEQSGEFAKALALYAELLEANPANALVLKRKIAVLKAQKKAADVIIALNEFLRSFGTDQAAWTELGETYLSMGAYRYAAFCYEELVLLNPMDAISHSRLGDVYSTIGGLENLLKARKHYAHSIELNKKQNLRASFSL 240          
BLAST of Gcaud6866.t2 vs. uniprot
Match: A0A3F2S295_9STRA (ER membrane protein complex subunit 2 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S295_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.690e-33
Identity = 79/225 (35.11%), Postives = 121/225 (53.78%), Query Frame = 0
Query:   35 WDVVEQLFIAACQLRDHATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHPRSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQLGRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAASLSLRSAPNLRALYGLWLVC--AILVDGNLLDDEAERATTLRLLNVARKGITAVY-ANSS 256
            W V EQ  IAA  + D   A + L  +  +FP S+R   L+G+ LE + ++  A   Y  ++  +P +    KR+IA+LK+Q+K  +    L+ +L  FGTD   W EL    L LG + +A F   EL++++P +   H  +AD+Y T+GG+++L  ARKHYA S+ L    NLRA + L ++C  AI    +   D+ +     RL   A   I   Y AN+S
Sbjct:   60 WAVYEQTCIAALDVHDDELAETCLKALQTKFPGSSRVARLEGMFLEQRGEFAKALALYDELLEANPANALVLKRKIAVLKAQKKTADVVTALNEFLRSFGTDLAAWTELGETYLSLGAYRYAAFCYEELVLLNPMDSIFHSRLADIYSTIGGLDNLLTARKHYAHSIELNKKQNLRAYFSL-VICTKAIAAQRSYRADQDDDGINERLQKFALDYIQDFYSANAS 283          
The following BLAST results are available for this feature:
BLAST of Gcaud6866.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWL8_9FLOR1.080e-11762.63ER membrane protein complex subunit 2 n=1 Tax=Grac... [more]
M4BV78_HYAAE4.570e-3834.85ER membrane protein complex subunit 2 n=1 Tax=Hyal... [more]
H3HDU6_PHYRM1.210e-3734.84ER membrane protein complex subunit 2 n=1 Tax=Phyt... [more]
A0A0N7L4P2_PLAHL4.480e-3736.21ER membrane protein complex subunit 2 n=1 Tax=Plas... [more]
A0A3M6V6N0_9STRA5.970e-3734.84ER membrane protein complex subunit 2 n=1 Tax=Pero... [more]
A0A7S2CCR7_9STRA1.540e-3532.23ER membrane protein complex subunit 2 n=1 Tax=Flor... [more]
A0A484E9D9_BRELC2.270e-3532.82ER membrane protein complex subunit 2 n=1 Tax=Brem... [more]
W2QL82_PHYPN1.070e-3433.60ER membrane protein complex subunit 2 n=9 Tax=Phyt... [more]
D0NVY1_PHYIT3.150e-3337.57ER membrane protein complex subunit 2 n=2 Tax=Phyt... [more]
A0A3F2S295_9STRA8.690e-3335.11ER membrane protein complex subunit 2 n=3 Tax=Phyt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 10..242
e-value: 9.8E-16
score: 59.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 44..188
IPR039856ER membrane protein complex subunit 2-likePANTHERPTHR12760TETRATRICOPEPTIDE REPEAT PROTEINcoord: 15..253
NoneNo IPR availablePANTHERPTHR12760:SF0ER MEMBRANE PROTEIN COMPLEX SUBUNIT 2coord: 15..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_37_length_70757_cov_4.492641contigNODE_37_length_70757_cov_4.492641:16647..17495 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud6866.t2Gcaud6866.t2Gracilaria caudata M_176_S67 malemRNANODE_37_length_70757_cov_4.492641 16647..17495 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud6866.t2 ID=Gcaud6866.t2|Name=Gcaud6866.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
LLSAIADGALYLPHLVLQHASLALTAHRETSRPYWDVVEQLFIAACQLRD
HATASSVLDRILGRFPNSARSGILKGLRLEAKCDWIAAAKEYIHVIAEHP
RSQNAYKRQIALLKSQQKLPEAAALLHHYLDLFGTDFDGWAELCSLALQL
GRFAHAIFAANELLVIDPQNHAAHVVVADVYITLGGVEHLCLARKHYAAS
LSLRSAPNLRALYGLWLVCAILVDGNLLDDEAERATTLRLLNVARKGITA
VYANSSTLSGGVYVATTLGSSVYTGKKRMLRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR039856EMC2-like